| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734887
Identifier: 187734887
GI number: 187734887
Start: 452680
End: 454983
Strand: Reverse
Name: 187734887
Synonym: Amuc_0379
Alternate gene names: NA
Gene position: 454983-452680 (Counterclockwise)
Preceding gene: 187734888
Following gene: 187734886
Centisome position: 17.08
GC content: 54.43
Gene sequence:
>2304_bases ATGATATGGCAGAATATTTCCGCCATGTCCGCCCCTGAATCTGCTGATGCCCCTGTGAACCGCCCTTCCATGAAGAAATG GGTGGTTCTCCTCGTTGTTCTTGGGGCTTTGATCGGACTGGGCACAATGGTGAAGGCCTGGATGGACAGACGTTCTGGAG CGGCAGCGCAGCCGGTTGTTTTTTCAGGAGGCAGTGAGCACTGGGACCAGAATGAGGTGCCTATTTCCATGCAGTGCGGA GCATGTCATGAAAAGGAATTCCGTCAGTGGGCCGGTTCAGACCATGCCTGGGCATTCCGCAAACTGGGAGATCAATGGGA ATCTGAAGCGTTCCATAACATGAAGCTGGACGCTCATGGCAGCATTCTCCAATTCTCTACGAATGGTCACGGGCGCATGG TCCATGACGGTCAGTCTTCAACCTCCTGGCGCGCGGAATGGGCCACAGGGAGAATTCCCCTGGTGCAGTATCTGGTTCCT GCCAAGGACGGCGGTTTTCATACCTTGAGCGCTGCATGGGACGTGAACCGCAAAGAATGGTTTGATATTTTCGGCAAGGA GTCCCGCCAGCCGGGAGACTGGGGGCACTGGACAGGACGAGGCATGAATTGGAACACGCAGTGCGCGTGGTGCCACATGT CTTTGTTCCATAAGAATTATGATCCTGTTAAAGATCGGTATGCTTCTACCTGGACGGAACCCGGAGTGACTTGCATTCAA TGCCACGGCCCCCTGCTGGACAAGCCGGAGGCGGGGACGGGTTGCATGATTTCCACCAGGAACAAGCTGACGCCACAGCA GATTCATGATAACTGCGCTTCCTGCCATGCCCGGAGGGATGAATTTGATCATGATTTTGCCGTAGGTGACCGTTTTGACA ATCATTTCCAACTGGTGCTTCCCGTGCAGCCCGGCGTTTTCTGGCCCAATGGCATGCAAAGGGATGAGGATTATTGCGAG ACTGGTCTGAGGTTAAGCCGTATGGGCAAGGCGGGAGTGACCTGTTTGGACTGTCATGATCCGCATACGGGAACACTGAA GCTTCCTCAAGAAGATAATACGCTCTGCTTGAGGTGTCACGGTACTGGAGAAGCGGTAAACGGCGTAAAAGCTCCCGTTA TTGACATGGCTACGCATACGCCATGTCCTCAGTCCAGCATGGGTGCCCGGTGTGTGGAATGCCATATGCCGGAAAGCCTG TATATGGCTCGGGACCCCCGCAGGGATCATTCTTTCAATTCTCCTGATCCTTTGCTGAGCGTAGAGTTGGGGATTCCGAA TGCCTGTACCATGTGCCACGAGGAAAAAAGCAATGAATGGGCTGCGGAGGCGGTAAAGAAATATTACGGAGCTAAACCCA AAATGGCGCAGTACAGGGAACGGACCAGGGCCGTTCAGCATGCCTACGAAGGAAAGGAAGATGTTTTGCCTCTGCTTATG GAATGTTTTAAGAGGGAGGAAGTGGGTGCATGGCGCGCTACGTTATTGGATTTGATGGATGCATGGGCTCATGAACCCGC CGTCCAGGAAGTGGCCGCGGCGGCGGTTAAGGACCCGGATCCTCTGACGCGAGCCGCCGCCGCCAAAGTGATGGGGCGAG TGGGTAATCCTGCTGCGGGCAAACTTCTTAATGATCCGTTCAGGGTCGTGCGCTTGCAGGCGGAATGGGCTCTCCGGGAT TCCCTGCCTCCGGACAGTCCGGGAATGAAGGAGCTTACTGCTGCCGCTTTGCACCAGGCGGACCAGCCTTCCGGAGCTAT GAAGCTGGCCCAGATAGCCATTAGCCGTAAGGATGTGAAAACTGCGGAATTGTGGTTTTCCAAAGCTTTGAAATGGGATG CCACTTCATCCGTGGTGCACCGTGATTATGCCGTTTTCCTGGCTTCTCAAGGCCGCAGCCGGGAGGCGGTGGATCAGATG CAAGAGGCTGTACGCCTGGCTCCCAGGGATGCCAATCTGTGGTATCTCCTGGGACTGGGCCAGATTGAAAATAATGATGA GTCGGGAGCTTTGGAATCCTTTAACGAAGCTTTAAAAATAGAGCCTTCCTTTATTCGTGCTTTGTTTAACCGTGCTCTGT TGAATGAAAAAGTGGGCCGGCTGGAGCAGGCTTTGCAGGATTTGGAAAACTGTTCTTCCCTGGAAAAGGGAAATGCGGAT ATTCCTTTCACTCTTGCGGTGATGCTTTACCGCAATGGGCGGTACCGTGAGGCCGCTGCCGCTGCCGCGGAAGCCCTGCG CCGCGACCCGGGACATGCCCGGGCCAGGCAAATTTTGGAATCAGCTTCTCGACATGGAAGATAA
Upstream 100 bases:
>100_bases CGGGAGGAGGTCCTGGAAGAGGAGGAATAATCTGCCGTTTACGGACTGGGCATGTCAAGGACTGTGCTGCCTGATGTAAA AGTTCCTTGGTGGAGCGCGT
Downstream 100 bases:
>100_bases GAAATAGTATATTAGCATTATGTGTATGAAATTTTCATCTTGGTGTATCTTATTGGCATCCACATTCATGATGGGGTCCT CTCTCTGTTGGGCGGATTCT
Product: cytochrome C family protein
Products: NA
Alternate protein names: Cytochrome C Family Protein; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; TPR Domain Protein; Doubled CXXCH Domain Protein; FOG TPR Repeat; Signal Peptide; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Domain-Containing Protein; Doubled CXXCH Domain-Containing Protein; Deca-Heme C-Type Cytochrome
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MIWQNISAMSAPESADAPVNRPSMKKWVVLLVVLGALIGLGTMVKAWMDRRSGAAAQPVVFSGGSEHWDQNEVPISMQCG ACHEKEFRQWAGSDHAWAFRKLGDQWESEAFHNMKLDAHGSILQFSTNGHGRMVHDGQSSTSWRAEWATGRIPLVQYLVP AKDGGFHTLSAAWDVNRKEWFDIFGKESRQPGDWGHWTGRGMNWNTQCAWCHMSLFHKNYDPVKDRYASTWTEPGVTCIQ CHGPLLDKPEAGTGCMISTRNKLTPQQIHDNCASCHARRDEFDHDFAVGDRFDNHFQLVLPVQPGVFWPNGMQRDEDYCE TGLRLSRMGKAGVTCLDCHDPHTGTLKLPQEDNTLCLRCHGTGEAVNGVKAPVIDMATHTPCPQSSMGARCVECHMPESL YMARDPRRDHSFNSPDPLLSVELGIPNACTMCHEEKSNEWAAEAVKKYYGAKPKMAQYRERTRAVQHAYEGKEDVLPLLM ECFKREEVGAWRATLLDLMDAWAHEPAVQEVAAAAVKDPDPLTRAAAAKVMGRVGNPAAGKLLNDPFRVVRLQAEWALRD SLPPDSPGMKELTAAALHQADQPSGAMKLAQIAISRKDVKTAELWFSKALKWDATSSVVHRDYAVFLASQGRSREAVDQM QEAVRLAPRDANLWYLLGLGQIENNDESGALESFNEALKIEPSFIRALFNRALLNEKVGRLEQALQDLENCSSLEKGNAD IPFTLAVMLYRNGRYREAAAAAAEALRRDPGHARARQILESASRHGR
Sequences:
>Translated_767_residues MIWQNISAMSAPESADAPVNRPSMKKWVVLLVVLGALIGLGTMVKAWMDRRSGAAAQPVVFSGGSEHWDQNEVPISMQCG ACHEKEFRQWAGSDHAWAFRKLGDQWESEAFHNMKLDAHGSILQFSTNGHGRMVHDGQSSTSWRAEWATGRIPLVQYLVP AKDGGFHTLSAAWDVNRKEWFDIFGKESRQPGDWGHWTGRGMNWNTQCAWCHMSLFHKNYDPVKDRYASTWTEPGVTCIQ CHGPLLDKPEAGTGCMISTRNKLTPQQIHDNCASCHARRDEFDHDFAVGDRFDNHFQLVLPVQPGVFWPNGMQRDEDYCE TGLRLSRMGKAGVTCLDCHDPHTGTLKLPQEDNTLCLRCHGTGEAVNGVKAPVIDMATHTPCPQSSMGARCVECHMPESL YMARDPRRDHSFNSPDPLLSVELGIPNACTMCHEEKSNEWAAEAVKKYYGAKPKMAQYRERTRAVQHAYEGKEDVLPLLM ECFKREEVGAWRATLLDLMDAWAHEPAVQEVAAAAVKDPDPLTRAAAAKVMGRVGNPAAGKLLNDPFRVVRLQAEWALRD SLPPDSPGMKELTAAALHQADQPSGAMKLAQIAISRKDVKTAELWFSKALKWDATSSVVHRDYAVFLASQGRSREAVDQM QEAVRLAPRDANLWYLLGLGQIENNDESGALESFNEALKIEPSFIRALFNRALLNEKVGRLEQALQDLENCSSLEKGNAD IPFTLAVMLYRNGRYREAAAAAAEALRRDPGHARARQILESASRHGR >Mature_767_residues MIWQNISAMSAPESADAPVNRPSMKKWVVLLVVLGALIGLGTMVKAWMDRRSGAAAQPVVFSGGSEHWDQNEVPISMQCG ACHEKEFRQWAGSDHAWAFRKLGDQWESEAFHNMKLDAHGSILQFSTNGHGRMVHDGQSSTSWRAEWATGRIPLVQYLVP AKDGGFHTLSAAWDVNRKEWFDIFGKESRQPGDWGHWTGRGMNWNTQCAWCHMSLFHKNYDPVKDRYASTWTEPGVTCIQ CHGPLLDKPEAGTGCMISTRNKLTPQQIHDNCASCHARRDEFDHDFAVGDRFDNHFQLVLPVQPGVFWPNGMQRDEDYCE TGLRLSRMGKAGVTCLDCHDPHTGTLKLPQEDNTLCLRCHGTGEAVNGVKAPVIDMATHTPCPQSSMGARCVECHMPESL YMARDPRRDHSFNSPDPLLSVELGIPNACTMCHEEKSNEWAAEAVKKYYGAKPKMAQYRERTRAVQHAYEGKEDVLPLLM ECFKREEVGAWRATLLDLMDAWAHEPAVQEVAAAAVKDPDPLTRAAAAKVMGRVGNPAAGKLLNDPFRVVRLQAEWALRD SLPPDSPGMKELTAAALHQADQPSGAMKLAQIAISRKDVKTAELWFSKALKWDATSSVVHRDYAVFLASQGRSREAVDQM QEAVRLAPRDANLWYLLGLGQIENNDESGALESFNEALKIEPSFIRALFNRALLNEKVGRLEQALQDLENCSSLEKGNAD IPFTLAVMLYRNGRYREAAAAAAEALRRDPGHARARQILESASRHGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85493; Mature: 85493
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS00732 RIBOSOMAL_S16 ; PS51008 MULTIHEME_CYTC L=RR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIWQNISAMSAPESADAPVNRPSMKKWVVLLVVLGALIGLGTMVKAWMDRRSGAAAQPVV CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE FSGGSEHWDQNEVPISMQCGACHEKEFRQWAGSDHAWAFRKLGDQWESEAFHNMKLDAHG ECCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCC SILQFSTNGHGRMVHDGQSSTSWRAEWATGRIPLVQYLVPAKDGGFHTLSAAWDVNRKEW CEEEEECCCCCCEEECCCCCCCEEEECCCCCCCHHHHEECCCCCCCEEEEHHHCCCHHHH FDIFGKESRQPGDWGHWTGRGMNWNTQCAWCHMSLFHKNYDPVKDRYASTWTEPGVTCIQ HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEE CHGPLLDKPEAGTGCMISTRNKLTPQQIHDNCASCHARRDEFDHDFAVGDRFDNHFQLVL ECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE PVQPGVFWPNGMQRDEDYCETGLRLSRMGKAGVTCLDCHDPHTGTLKLPQEDNTLCLRCH ECCCCCCCCCCCCCCHHHHHHCCHHHHCCCCCCEEEECCCCCCCEEECCCCCCEEEEEEC GTGEAVNGVKAPVIDMATHTPCPQSSMGARCVECHMPESLYMARDPRRDHSFNSPDPLLS CCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCEEE VELGIPNACTMCHEEKSNEWAAEAVKKYYGAKPKMAQYRERTRAVQHAYEGKEDVLPLLM EEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH ECFKREEVGAWRATLLDLMDAWAHEPAVQEVAAAAVKDPDPLTRAAAAKVMGRVGNPAAG HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHH KLLNDPFRVVRLQAEWALRDSLPPDSPGMKELTAAALHQADQPSGAMKLAQIAISRKDVK HHCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH TAELWFSKALKWDATSSVVHRDYAVFLASQGRSREAVDQMQEAVRLAPRDANLWYLLGLG HHHHHHHHHHCCCCHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC QIENNDESGALESFNEALKIEPSFIRALFNRALLNEKVGRLEQALQDLENCSSLEKGNAD CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IPFTLAVMLYRNGRYREAAAAAAEALRRDPGHARARQILESASRHGR CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MIWQNISAMSAPESADAPVNRPSMKKWVVLLVVLGALIGLGTMVKAWMDRRSGAAAQPVV CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE FSGGSEHWDQNEVPISMQCGACHEKEFRQWAGSDHAWAFRKLGDQWESEAFHNMKLDAHG ECCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCC SILQFSTNGHGRMVHDGQSSTSWRAEWATGRIPLVQYLVPAKDGGFHTLSAAWDVNRKEW CEEEEECCCCCCEEECCCCCCCEEEECCCCCCCHHHHEECCCCCCCEEEEHHHCCCHHHH FDIFGKESRQPGDWGHWTGRGMNWNTQCAWCHMSLFHKNYDPVKDRYASTWTEPGVTCIQ HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEE CHGPLLDKPEAGTGCMISTRNKLTPQQIHDNCASCHARRDEFDHDFAVGDRFDNHFQLVL ECCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE PVQPGVFWPNGMQRDEDYCETGLRLSRMGKAGVTCLDCHDPHTGTLKLPQEDNTLCLRCH ECCCCCCCCCCCCCCHHHHHHCCHHHHCCCCCCEEEECCCCCCCEEECCCCCCEEEEEEC GTGEAVNGVKAPVIDMATHTPCPQSSMGARCVECHMPESLYMARDPRRDHSFNSPDPLLS CCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCEEE VELGIPNACTMCHEEKSNEWAAEAVKKYYGAKPKMAQYRERTRAVQHAYEGKEDVLPLLM EEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH ECFKREEVGAWRATLLDLMDAWAHEPAVQEVAAAAVKDPDPLTRAAAAKVMGRVGNPAAG HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHH KLLNDPFRVVRLQAEWALRDSLPPDSPGMKELTAAALHQADQPSGAMKLAQIAISRKDVK HHCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH TAELWFSKALKWDATSSVVHRDYAVFLASQGRSREAVDQMQEAVRLAPRDANLWYLLGLG HHHHHHHHHHCCCCHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC QIENNDESGALESFNEALKIEPSFIRALFNRALLNEKVGRLEQALQDLENCSSLEKGNAD CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC IPFTLAVMLYRNGRYREAAAAAAEALRRDPGHARARQILESASRHGR CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA