| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734630
Identifier: 187734630
GI number: 187734630
Start: 143259
End: 144851
Strand: Reverse
Name: 187734630
Synonym: Amuc_0116
Alternate gene names: NA
Gene position: 144851-143259 (Counterclockwise)
Preceding gene: 187734631
Following gene: 187734629
Centisome position: 5.44
GC content: 62.84
Gene sequence:
>1593_bases GTGAGCGGAGGGGAAGGAATAACGGTGGATGTGATTCTGCCGATGGAAAAGGCCGGCAGCGAGCGCGTGCGCCGCGCTGC CGTGGCGCGGAAGCTGGGTATTTCCCCCTCCCGTATCAAAGATGTGCGGCTGGTGAAGGAGTCCATTGACTCCCGGCAGA AAAAAATTCTCTTCCAGCTTCGGCTGCTGGTCGGGGTGGATAGCCCGCTGCCGCCGGAACGTCTTCCCTCCCGGGATTAT CCGTCCGTCCGTCCCGGCTCCCCCGTGGCGCTGATCGTTGGATTCGGACCGGCCGGGATGTTCGCCGCGCTCCGCTGTTT GGAACTGGGTATGAAGCCTGTGGTTCTGGAACGGGGGAAGGATGTTTCCTCCCGCCGGTTTGACCTGGCTCCCATCCTGC GCCGCGGCACGGTGATGGAGGATTCCAATTACTGTTTTGGAGAGGGAGGGGCAGGCACGTTTTCCGACGGGAAGCTGTTT ACGCGCGCCACCAAGAGAGGCCCCGTCCGGGAGGTTTACGAGATTTTTGTAGCCCACGGAGCGCCCAGGGAAATTTTAAC GGACGCCCACCCGCATATCGGCTCCAATCTGTTGCCCAATGTTGTCAAAGCCATCAGGGAATCCATCCTTCGCGCGGGCG GGGAAATTCATTTCAATGCCCGTGTGGAGCATCTGCTCCGTTCTGCGGACGGCCGCCGCATACGCGGCGTGGCCTGCGCG GATGGCCGGGAATTTGCGGCGGATTCCGTTTTGCTGGCTACCGGGCACAGTGCCCGGGACGTGTACCGCATGATGCTGGC GGAGAGGCTGGCTCTGGAACAGAAATCCTTTGCCGTGGGTGTGCGCATTGAGCATCCCCAGGCGTTTGTTGATGCGCGCC AGTACCACCTGAATCCGGAGCAGAGGCGCCCGGAGCAGCTTCCGGCAGCCCGTTATTCCGTGACGACCACCATCCAGGAC CGCGGCGTCCATTCCTTCTGCATGTGTCCCGGCGGCTTCATCGTGCCCGCCGCCACGGAGAACGATGAGGTAGTGGTCAA CGGCATGTCTCTGGCCCGGAGGGATTCTCCATTTGCCAATGCCGGTTTTGTAGTCAGCGTGCATACGGAAGATACGGAAC CGTTTTGCAGGGAACACGGGGTGCTGGCGGGCGTGGCGTACCAGAAAGCGCTGGAGACGGCTTCCTGCCGTGCCGGAGGA GGCATGCAGAAAGCCCCGGCCCAGAAGGTGGAGGATTTTCTGAAAGGGCGCGTTTCTTCTTCCCTGCTGCCTACCAGCTA TCATCCCGGCATCGTATCCCATCCCCTTCATGAATTGCTCCCGGAAGGGATTGTCTGGCGCATGCGGGAGGGGCTGCGGC AGTTTGACCGTAAATGGCGGGGATTCGCCGGAGCGGACGCCCAGCTCATTGGCTGTGAGACGCGCACCAGCTCCCCCGTG CGCATTCCAAGGGACCCCGCCACGCTGGAGCATCCCGGTCTGGAGGGCCTGTACCCATGCGGCGAAGGGGCGGGTTACGC CGGCGGCATTGTTTCCGCCGCCCTGGACGGACGCCGTTGTGCGGAGGCCATGGCGCAGCAGGCGACCCGCTAG
Upstream 100 bases:
>100_bases GAAAACAGGTAATAGGGGTGGATGCCCGCAAGCTGGTGCTGGAAGGCGGCGCCATCCACTGCATCACCCAGCAGCAGCCT CGGCCGGGGAAGGAGGGACT
Downstream 100 bases:
>100_bases GTTTTTTCAAGCGTCCGGCCGCCGGAGCGATGCAGTTTTTCTGCGTTTCTGGATGAAGATACGCCCCTGCGAGCCTTGTT ATGCCGGAACCGGATGCCAT
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 530; Mature: 529
Protein sequence:
>530_residues MSGGEGITVDVILPMEKAGSERVRRAAVARKLGISPSRIKDVRLVKESIDSRQKKILFQLRLLVGVDSPLPPERLPSRDY PSVRPGSPVALIVGFGPAGMFAALRCLELGMKPVVLERGKDVSSRRFDLAPILRRGTVMEDSNYCFGEGGAGTFSDGKLF TRATKRGPVREVYEIFVAHGAPREILTDAHPHIGSNLLPNVVKAIRESILRAGGEIHFNARVEHLLRSADGRRIRGVACA DGREFAADSVLLATGHSARDVYRMMLAERLALEQKSFAVGVRIEHPQAFVDARQYHLNPEQRRPEQLPAARYSVTTTIQD RGVHSFCMCPGGFIVPAATENDEVVVNGMSLARRDSPFANAGFVVSVHTEDTEPFCREHGVLAGVAYQKALETASCRAGG GMQKAPAQKVEDFLKGRVSSSLLPTSYHPGIVSHPLHELLPEGIVWRMREGLRQFDRKWRGFAGADAQLIGCETRTSSPV RIPRDPATLEHPGLEGLYPCGEGAGYAGGIVSAALDGRRCAEAMAQQATR
Sequences:
>Translated_530_residues MSGGEGITVDVILPMEKAGSERVRRAAVARKLGISPSRIKDVRLVKESIDSRQKKILFQLRLLVGVDSPLPPERLPSRDY PSVRPGSPVALIVGFGPAGMFAALRCLELGMKPVVLERGKDVSSRRFDLAPILRRGTVMEDSNYCFGEGGAGTFSDGKLF TRATKRGPVREVYEIFVAHGAPREILTDAHPHIGSNLLPNVVKAIRESILRAGGEIHFNARVEHLLRSADGRRIRGVACA DGREFAADSVLLATGHSARDVYRMMLAERLALEQKSFAVGVRIEHPQAFVDARQYHLNPEQRRPEQLPAARYSVTTTIQD RGVHSFCMCPGGFIVPAATENDEVVVNGMSLARRDSPFANAGFVVSVHTEDTEPFCREHGVLAGVAYQKALETASCRAGG GMQKAPAQKVEDFLKGRVSSSLLPTSYHPGIVSHPLHELLPEGIVWRMREGLRQFDRKWRGFAGADAQLIGCETRTSSPV RIPRDPATLEHPGLEGLYPCGEGAGYAGGIVSAALDGRRCAEAMAQQATR >Mature_529_residues SGGEGITVDVILPMEKAGSERVRRAAVARKLGISPSRIKDVRLVKESIDSRQKKILFQLRLLVGVDSPLPPERLPSRDYP SVRPGSPVALIVGFGPAGMFAALRCLELGMKPVVLERGKDVSSRRFDLAPILRRGTVMEDSNYCFGEGGAGTFSDGKLFT RATKRGPVREVYEIFVAHGAPREILTDAHPHIGSNLLPNVVKAIRESILRAGGEIHFNARVEHLLRSADGRRIRGVACAD GREFAADSVLLATGHSARDVYRMMLAERLALEQKSFAVGVRIEHPQAFVDARQYHLNPEQRRPEQLPAARYSVTTTIQDR GVHSFCMCPGGFIVPAATENDEVVVNGMSLARRDSPFANAGFVVSVHTEDTEPFCREHGVLAGVAYQKALETASCRAGGG MQKAPAQKVEDFLKGRVSSSLLPTSYHPGIVSHPLHELLPEGIVWRMREGLRQFDRKWRGFAGADAQLIGCETRTSSPVR IPRDPATLEHPGLEGLYPCGEGAGYAGGIVSAALDGRRCAEAMAQQATR
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 57661; Mature: 57530
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGGEGITVDVILPMEKAGSERVRRAAVARKLGISPSRIKDVRLVKESIDSRQKKILFQL CCCCCEEEEEEEECCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH RLLVGVDSPLPPERLPSRDYPSVRPGSPVALIVGFGPAGMFAALRCLELGMKPVVLERGK HHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCC DVSSRRFDLAPILRRGTVMEDSNYCFGEGGAGTFSDGKLFTRATKRGPVREVYEIFVAHG CCCCCCCCHHHHHHCCCEECCCCEEECCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHCC APREILTDAHPHIGSNLLPNVVKAIRESILRAGGEIHFNARVEHLLRSADGRRIRGVACA CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEEEEC DGREFAADSVLLATGHSARDVYRMMLAERLALEQKSFAVGVRIEHPQAFVDARQYHLNPE CCCHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCCCHH QRRPEQLPAARYSVTTTIQDRGVHSFCMCPGGFIVPAATENDEVVVNGMSLARRDSPFAN HCCHHHCCCCCEEEEEEEHHCCCCEEEECCCCEEEECCCCCCCEEEECHHHHHCCCCCCC AGFVVSVHTEDTEPFCREHGVLAGVAYQKALETASCRAGGGMQKAPAQKVEDFLKGRVSS CCEEEEEECCCCCHHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC SLLPTSYHPGIVSHPLHELLPEGIVWRMREGLRQFDRKWRGFAGADAQLIGCETRTSSPV CCCCCCCCCCHHHCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC RIPRDPATLEHPGLEGLYPCGEGAGYAGGIVSAALDGRRCAEAMAQQATR CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCCC >Mature Secondary Structure SGGEGITVDVILPMEKAGSERVRRAAVARKLGISPSRIKDVRLVKESIDSRQKKILFQL CCCCEEEEEEEECCHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH RLLVGVDSPLPPERLPSRDYPSVRPGSPVALIVGFGPAGMFAALRCLELGMKPVVLERGK HHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCC DVSSRRFDLAPILRRGTVMEDSNYCFGEGGAGTFSDGKLFTRATKRGPVREVYEIFVAHG CCCCCCCCHHHHHHCCCEECCCCEEECCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHCC APREILTDAHPHIGSNLLPNVVKAIRESILRAGGEIHFNARVEHLLRSADGRRIRGVACA CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCEEEEEEEC DGREFAADSVLLATGHSARDVYRMMLAERLALEQKSFAVGVRIEHPQAFVDARQYHLNPE CCCHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHCCCHH QRRPEQLPAARYSVTTTIQDRGVHSFCMCPGGFIVPAATENDEVVVNGMSLARRDSPFAN HCCHHHCCCCCEEEEEEEHHCCCCEEEECCCCEEEECCCCCCCEEEECHHHHHCCCCCCC AGFVVSVHTEDTEPFCREHGVLAGVAYQKALETASCRAGGGMQKAPAQKVEDFLKGRVSS CCEEEEEECCCCCHHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC SLLPTSYHPGIVSHPLHELLPEGIVWRMREGLRQFDRKWRGFAGADAQLIGCETRTSSPV CCCCCCCCCCHHHCCHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC RIPRDPATLEHPGLEGLYPCGEGAGYAGGIVSAALDGRRCAEAMAQQATR CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]