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The map label for this gene is ygdL [H]

Identifier: 187734587

GI number: 187734587

Start: 95579

End: 96373

Strand: Direct

Name: ygdL [H]

Synonym: Amuc_0073

Alternate gene names: 187734587

Gene position: 95579-96373 (Clockwise)

Preceding gene: 187734586

Following gene: 187734588

Centisome position: 3.59

GC content: 55.97

Gene sequence:

>795_bases
ATGAACTATGAAGCCAGATTCGGCGGTATAGGCCGCCTGTACGGAAACAGCGGACTATCTCTTCTCAGAAGCGCCCGCAT
AGCCGTCGTCGGCATTGGGGGTGTAGGTTCCTGGGCGGCGGAAGCCCTGGCTCGGTCAGGCGTAGGCACTATCATTCTGA
TGGATATGGACGACCTCTGCATTACCAACACCAACCGGCAAATACATGCGTTGGCGTCCACAATCGGGCAATCCAAAACG
GAAACCATGGCCACACGCATCCGGGAAATCAACCCGGAAGCGGAAGTCATTCCCATCAGCAATTTCTACACGGCCTCCAA
CGCGGAAAAACTGCTGTCGGCGGAACCGGACGTCATCATTGACGCCATCGACTCCCTGATACCCAAGGCCCACCTCATCG
CCTCCTGTTACCGCGGCAAGCAACCGCTGGTAACCTGCGGCGGCGCGGGAGGGCGCATCAATCCCGCCCGGATAGAAATA
GACGACCTCTCCCGCACCAGGGGGGATCCCCTGCTCTCCAGCTTACGCTACAGGCTGAAAAAAGATTATGCCCTTCCGCT
TGGAGAAAAAGCCCGGAAACTGAAAATCCCCTGCGTTTTCTCCCAGGAAACGCCCGTATACCCCACCTGCGACGGAAAAA
CCTCCTGCACACGTGATCCGGAATTTCAAGGGAAAACGGGTTGTGACGCCGGATTCGGCTCCGTCACCCATATCACGGGA
ACCTTTGGCTTCTTTGCGGCTTCCGCCGCCATTCAAATGCTCTTAAATAAGAAAAAAACACCATCGTCATCATGA

Upstream 100 bases:

>100_bases
GATTTCCCGCGTTTCCATATTTTCAGGATGAAGCAACGGACAGAAACCCGGGCGCCCTTATTCCCCTTAATCTCCCATAC
TCTGGAACAGACACGTGGTC

Downstream 100 bases:

>100_bases
ACAAACTCCTGCTTTCCCTGCTGGGGGCCGCCCTCCTTCCCGCCTTGACCCAGTGCAACACCCTGGAAAAAGACATTGCC
GGCATCAACGCCCGCAATGC

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MNYEARFGGIGRLYGNSGLSLLRSARIAVVGIGGVGSWAAEALARSGVGTIILMDMDDLCITNTNRQIHALASTIGQSKT
ETMATRIREINPEAEVIPISNFYTASNAEKLLSAEPDVIIDAIDSLIPKAHLIASCYRGKQPLVTCGGAGGRINPARIEI
DDLSRTRGDPLLSSLRYRLKKDYALPLGEKARKLKIPCVFSQETPVYPTCDGKTSCTRDPEFQGKTGCDAGFGSVTHITG
TFGFFAASAAIQMLLNKKKTPSSS

Sequences:

>Translated_264_residues
MNYEARFGGIGRLYGNSGLSLLRSARIAVVGIGGVGSWAAEALARSGVGTIILMDMDDLCITNTNRQIHALASTIGQSKT
ETMATRIREINPEAEVIPISNFYTASNAEKLLSAEPDVIIDAIDSLIPKAHLIASCYRGKQPLVTCGGAGGRINPARIEI
DDLSRTRGDPLLSSLRYRLKKDYALPLGEKARKLKIPCVFSQETPVYPTCDGKTSCTRDPEFQGKTGCDAGFGSVTHITG
TFGFFAASAAIQMLLNKKKTPSSS
>Mature_264_residues
MNYEARFGGIGRLYGNSGLSLLRSARIAVVGIGGVGSWAAEALARSGVGTIILMDMDDLCITNTNRQIHALASTIGQSKT
ETMATRIREINPEAEVIPISNFYTASNAEKLLSAEPDVIIDAIDSLIPKAHLIASCYRGKQPLVTCGGAGGRINPARIEI
DDLSRTRGDPLLSSLRYRLKKDYALPLGEKARKLKIPCVFSQETPVYPTCDGKTSCTRDPEFQGKTGCDAGFGSVTHITG
TFGFFAASAAIQMLLNKKKTPSSS

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=257, Percent_Identity=52.1400778210117, Blast_Score=266, Evalue=1e-72,
Organism=Escherichia coli, GI1787048, Length=136, Percent_Identity=32.3529411764706, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082356, Length=134, Percent_Identity=30.5970149253731, Blast_Score=75, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6321790, Length=170, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=5e-21,
Organism=Saccharomyces cerevisiae, GI6322825, Length=166, Percent_Identity=32.5301204819277, Blast_Score=92, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24582879, Length=132, Percent_Identity=31.0606060606061, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 28232; Mature: 28232

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYEARFGGIGRLYGNSGLSLLRSARIAVVGIGGVGSWAAEALARSGVGTIILMDMDDLC
CCCCCCCCCEEEEECCCCHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCEE
ITNTNRQIHALASTIGQSKTETMATRIREINPEAEVIPISNFYTASNAEKLLSAEPDVII
EECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCEECCCHHHHHCCCCCHHH
DAIDSLIPKAHLIASCYRGKQPLVTCGGAGGRINPARIEIDDLSRTRGDPLLSSLRYRLK
HHHHHHCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHH
KDYALPLGEKARKLKIPCVFSQETPVYPTCDGKTSCTRDPEFQGKTGCDAGFGSVTHITG
HCCCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHH
TFGFFAASAAIQMLLNKKKTPSSS
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNYEARFGGIGRLYGNSGLSLLRSARIAVVGIGGVGSWAAEALARSGVGTIILMDMDDLC
CCCCCCCCCEEEEECCCCHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCEE
ITNTNRQIHALASTIGQSKTETMATRIREINPEAEVIPISNFYTASNAEKLLSAEPDVII
EECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCEECCCHHHHHCCCCCHHH
DAIDSLIPKAHLIASCYRGKQPLVTCGGAGGRINPARIEIDDLSRTRGDPLLSSLRYRLK
HHHHHHCCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHH
KDYALPLGEKARKLKIPCVFSQETPVYPTCDGKTSCTRDPEFQGKTGCDAGFGSVTHITG
HCCCCCCCCCCCEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHH
TFGFFAASAAIQMLLNKKKTPSSS
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]