| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is hemK [H]
Identifier: 187734558
GI number: 187734558
Start: 58390
End: 59295
Strand: Direct
Name: hemK [H]
Synonym: Amuc_0042
Alternate gene names: 187734558
Gene position: 58390-59295 (Clockwise)
Preceding gene: 187734557
Following gene: 187734559
Centisome position: 2.19
GC content: 57.73
Gene sequence:
>906_bases ATGAAAACTTTACTGGAAGTCCTTCAGGCCGGCACGGATTATCTGGCCCGCCAGGGGTGCGACGAGGCACGCGCCACCAT GCAGCATTTGCTGGCCCATGTCCTGCACTGCAACCGCACGGCTCTTTACTCCCAGTTTGACAGGCCCGTGGAAGAAGCGG AGCTGGCACCCCTGCGCGAACTGCTGAAACGCAGGGCAGCGGGAGAACCGCTGCAGCATCTGCTGGGGGTCACGGAATTT TTCCGGAGAGATTTCCTGACGGATGCCCGCGCCCTGATTCCCCGCCCGGAAACCGAGGAACTGGTGGAAATGGTGTTAAA GAAAATCCCGGACCATCCGGTACGCATCCTGGACATGGGCACGGGCTCCGGCGTTATCGGCGTCACGCTGGCGCTGGAAC TCAAGGAGCGCGCCGGAGAAGTCGTGCTGGCGGACATTTCCCCGCAGGCTCTGGATCTGGCCCTGGAAAATGCCATGCGG CTGGGAGCCAGAGTCTCCACCATCCAGACGAATCTGTTCGCCAACATTTCCCAGGAAAAAACGGATCCGCATGCGGAGGA TGCCGATTCTGCTCCGGAGGGAAAAAAAGGGGAAAACGGGCGGAACATGCTCTTTGACGTTATCGTGGCCAATCTGCCAT ACATTGCAGAGGGGGAAAAACTTGCCCCGGAAGTCATGAAAGACCCCCATACAGCCCTGTTCGGAGGCCCTAAAGGCTGG GAAATCATTGAACGCTTTCTGGCCCGCGCCAGGGATTACCTGAACGAAGACGGCTTTGTAGCCCTGGAAATCGGGTACGA CCAGGCATCCGTCGTAACGCAAATCATGGATGGATACGGCTACAATTACATTGAAGTTCTGAAGGACATGAGCGGCGTCT CCCGTTTCCCCTTCGGCTATCGTTAA
Upstream 100 bases:
>100_bases CTGATGGGGCAGCTGGAAGACCTGATTATGGCCCTCCAGCATGCGGAAATGCAGGAACGCCTGGCGGAGGCCGGAATGTC CTAACTTCCTTTTTCCTTTC
Downstream 100 bases:
>100_bases TGTTATCCTCCTTTTCACTCCATGCAGGCGGCGCGCATTCTGGTTGACGGACAAAGCGATCTGGTACTGGATTACGGTAT TCCTCCGGAAGCGGGAGACG
Product: protein-(glutamine-N5) methyltransferase, release factor-specific
Products: NA
Alternate protein names: HemK protein homolog; M.RcoHemKP; tRNA (guanine-N(7)-)-methyltransferase; tRNA(m7G46)-methyltransferase [H]
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MKTLLEVLQAGTDYLARQGCDEARATMQHLLAHVLHCNRTALYSQFDRPVEEAELAPLRELLKRRAAGEPLQHLLGVTEF FRRDFLTDARALIPRPETEELVEMVLKKIPDHPVRILDMGTGSGVIGVTLALELKERAGEVVLADISPQALDLALENAMR LGARVSTIQTNLFANISQEKTDPHAEDADSAPEGKKGENGRNMLFDVIVANLPYIAEGEKLAPEVMKDPHTALFGGPKGW EIIERFLARARDYLNEDGFVALEIGYDQASVVTQIMDGYGYNYIEVLKDMSGVSRFPFGYR
Sequences:
>Translated_301_residues MKTLLEVLQAGTDYLARQGCDEARATMQHLLAHVLHCNRTALYSQFDRPVEEAELAPLRELLKRRAAGEPLQHLLGVTEF FRRDFLTDARALIPRPETEELVEMVLKKIPDHPVRILDMGTGSGVIGVTLALELKERAGEVVLADISPQALDLALENAMR LGARVSTIQTNLFANISQEKTDPHAEDADSAPEGKKGENGRNMLFDVIVANLPYIAEGEKLAPEVMKDPHTALFGGPKGW EIIERFLARARDYLNEDGFVALEIGYDQASVVTQIMDGYGYNYIEVLKDMSGVSRFPFGYR >Mature_301_residues MKTLLEVLQAGTDYLARQGCDEARATMQHLLAHVLHCNRTALYSQFDRPVEEAELAPLRELLKRRAAGEPLQHLLGVTEF FRRDFLTDARALIPRPETEELVEMVLKKIPDHPVRILDMGTGSGVIGVTLALELKERAGEVVLADISPQALDLALENAMR LGARVSTIQTNLFANISQEKTDPHAEDADSAPEGKKGENGRNMLFDVIVANLPYIAEGEKLAPEVMKDPHTALFGGPKGW EIIERFLARARDYLNEDGFVALEIGYDQASVVTQIMDGYGYNYIEVLKDMSGVSRFPFGYR
Specific function: Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA [H]
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the methyltransferase superfamily. TrmB family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=320, Percent_Identity=31.5625, Blast_Score=97, Evalue=2e-20, Organism=Escherichia coli, GI1787463, Length=285, Percent_Identity=31.2280701754386, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI87082085, Length=225, Percent_Identity=28, Blast_Score=78, Evalue=5e-16, Organism=Drosophila melanogaster, GI24582226, Length=288, Percent_Identity=29.1666666666667, Blast_Score=86, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR019874 - InterPro: IPR007848 - InterPro: IPR003358 [H]
Pfam domain/function: PF02390 Methyltransf_4; PF05175 MTS [H]
EC number: =2.1.1.33 [H]
Molecular weight: Translated: 33493; Mature: 33493
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLLEVLQAGTDYLARQGCDEARATMQHLLAHVLHCNRTALYSQFDRPVEEAELAPLRE CHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH LLKRRAAGEPLQHLLGVTEFFRRDFLTDARALIPRPETEELVEMVLKKIPDHPVRILDMG HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECC TGSGVIGVTLALELKERAGEVVLADISPQALDLALENAMRLGARVSTIQTNLFANISQEK CCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC TDPHAEDADSAPEGKKGENGRNMLFDVIVANLPYIAEGEKLAPEVMKDPHTALFGGPKGW CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHCHHHHCCCCCCCCCCCCCH EIIERFLARARDYLNEDGFVALEIGYDQASVVTQIMDGYGYNYIEVLKDMSGVSRFPFGY HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC R C >Mature Secondary Structure MKTLLEVLQAGTDYLARQGCDEARATMQHLLAHVLHCNRTALYSQFDRPVEEAELAPLRE CHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHH LLKRRAAGEPLQHLLGVTEFFRRDFLTDARALIPRPETEELVEMVLKKIPDHPVRILDMG HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECC TGSGVIGVTLALELKERAGEVVLADISPQALDLALENAMRLGARVSTIQTNLFANISQEK CCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC TDPHAEDADSAPEGKKGENGRNMLFDVIVANLPYIAEGEKLAPEVMKDPHTALFGGPKGW CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHCHHHHCCCCCCCCCCCCCH EIIERFLARARDYLNEDGFVALEIGYDQASVVTQIMDGYGYNYIEVLKDMSGVSRFPFGY HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]