| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187734534
Identifier: 187734534
GI number: 187734534
Start: 23308
End: 24450
Strand: Direct
Name: 187734534
Synonym: Amuc_0018
Alternate gene names: NA
Gene position: 23308-24450 (Clockwise)
Preceding gene: 187734533
Following gene: 187734535
Centisome position: 0.87
GC content: 57.66
Gene sequence:
>1143_bases ATGCTTTCCTATTGTACCAATATTCATCCCGCAGAATCCTGGGCGGAAACCAGGGAGGCTCTTTTCACCTGCGTTCCCCG CATCAGGCAGGAACTCGCGGCGATGGACTCCCCTCTGAAGGATCTCCCCCTGGGCATCGGCCTGCGCCTGTCCGCCAGGG CGGCAGCGGAGCTTCTGGCAACGCCGCACGCCGCGGAAACCCTGAAATCATGGCTGGAAGACCAGGGCGCGCGCGTAGAA ACCCTTAACGGGTTCCCTTACGGAAATTTCCACGGGCAGCGCGTGAAAGAACGCGTTTTCCAGCCGGACTGGACTACACC GGAACGTTTTGAATACACCTGCAACCTGTTCCGCATTCTGGCACTCATTGGTGACGAACAGGCTGACAGGCTGACCGTCA GCACGCTCCCTGCCTCGCACAGCTGGTTTCATGCGGATGAAGAACGCATCTTCTCCCGGCTGGACGCCATGAGCGGATTC CTGGATGTGCTGGGCAGGCAGACCGGCTGCCTGATGCAGCTGGGGCTGGAACCGGAACCCTTCGGCCATTTTCACGATAC GGATGGAGCCATCCGTTTTTTCAACGGCCTCCGCAACCGTTCCCGCCGTCCCGAACTTATCGAACGCCACCTGGGGCTGA CATACGATACCTGCCATTTCGCCATTCTCCGGGAAGAACCGGAATTCACCCTCTCCGCCTGGGAGGAAAACAACATCGCC CTCTGCAAAGTGCAATTTTCCAACGCCCTGGAATGCCGCATATGTGGGGAGGAAGACCTGGAACGCCTCCGGCAGTTTGA CGATGGCGTTTATTTCCATCAGACCAGCATCCTCCACCGGGAAGGCGCCATGCTTTTCCCGGACCTGCCCAATGCCCTGG CCTATGGGCGGGATTATGCAGAGGAAATACGTGATTCCCAATGGCGCATTCATTACCACATTCCCCTGTACGCTTCACCG GAACCACCCTTGAAAAGCACGGAAGAATTCATCCAGAAAACGCATAATTTCCTCCGGAGCCGCAAAGGCCCGCAACCGCA TCTGGAGGTGGAAACCTATACCTGGAGCGTCCTGCCGGACCACATGAAGATCCCCCTGGCAGCCCAGATTGCCCGTGAAC TGCATTATATTGAAACCCTGTAA
Upstream 100 bases:
>100_bases AGCGGAACTCCATGAAATTTTCCTTCTGCGCGGAACCGTATTTAGGCAAGAAAAATATCCTGCAGAAAAACGCCGTTCCC CTTACATCACACACGCCTTC
Downstream 100 bases:
>100_bases AGCCATGATGCCCCGCATGCATCCCTCCGCCTTCCTGTCTTCCGGATTCCTGCTGCTGTCCACCGGTCTTTCCTCCTGCA CATTTCTTCCCATGTTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MLSYCTNIHPAESWAETREALFTCVPRIRQELAAMDSPLKDLPLGIGLRLSARAAAELLATPHAAETLKSWLEDQGARVE TLNGFPYGNFHGQRVKERVFQPDWTTPERFEYTCNLFRILALIGDEQADRLTVSTLPASHSWFHADEERIFSRLDAMSGF LDVLGRQTGCLMQLGLEPEPFGHFHDTDGAIRFFNGLRNRSRRPELIERHLGLTYDTCHFAILREEPEFTLSAWEENNIA LCKVQFSNALECRICGEEDLERLRQFDDGVYFHQTSILHREGAMLFPDLPNALAYGRDYAEEIRDSQWRIHYHIPLYASP EPPLKSTEEFIQKTHNFLRSRKGPQPHLEVETYTWSVLPDHMKIPLAAQIARELHYIETL
Sequences:
>Translated_380_residues MLSYCTNIHPAESWAETREALFTCVPRIRQELAAMDSPLKDLPLGIGLRLSARAAAELLATPHAAETLKSWLEDQGARVE TLNGFPYGNFHGQRVKERVFQPDWTTPERFEYTCNLFRILALIGDEQADRLTVSTLPASHSWFHADEERIFSRLDAMSGF LDVLGRQTGCLMQLGLEPEPFGHFHDTDGAIRFFNGLRNRSRRPELIERHLGLTYDTCHFAILREEPEFTLSAWEENNIA LCKVQFSNALECRICGEEDLERLRQFDDGVYFHQTSILHREGAMLFPDLPNALAYGRDYAEEIRDSQWRIHYHIPLYASP EPPLKSTEEFIQKTHNFLRSRKGPQPHLEVETYTWSVLPDHMKIPLAAQIARELHYIETL >Mature_380_residues MLSYCTNIHPAESWAETREALFTCVPRIRQELAAMDSPLKDLPLGIGLRLSARAAAELLATPHAAETLKSWLEDQGARVE TLNGFPYGNFHGQRVKERVFQPDWTTPERFEYTCNLFRILALIGDEQADRLTVSTLPASHSWFHADEERIFSRLDAMSGF LDVLGRQTGCLMQLGLEPEPFGHFHDTDGAIRFFNGLRNRSRRPELIERHLGLTYDTCHFAILREEPEFTLSAWEENNIA LCKVQFSNALECRICGEEDLERLRQFDDGVYFHQTSILHREGAMLFPDLPNALAYGRDYAEEIRDSQWRIHYHIPLYASP EPPLKSTEEFIQKTHNFLRSRKGPQPHLEVETYTWSVLPDHMKIPLAAQIARELHYIETL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43835; Mature: 43835
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSYCTNIHPAESWAETREALFTCVPRIRQELAAMDSPLKDLPLGIGLRLSARAAAELLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEHHHHHHHHHC TPHAAETLKSWLEDQGARVETLNGFPYGNFHGQRVKERVFQPDWTTPERFEYTCNLFRIL CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH ALIGDEQADRLTVSTLPASHSWFHADEERIFSRLDAMSGFLDVLGRQTGCLMQLGLEPEP HHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC FGHFHDTDGAIRFFNGLRNRSRRPELIERHLGLTYDTCHFAILREEPEFTLSAWEENNIA CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCEECCEEEEEEECCCCCEEEEECCCCEE LCKVQFSNALECRICGEEDLERLRQFDDGVYFHQTSILHREGAMLFPDLPNALAYGRDYA EEEEECCCCEEEEECCHHHHHHHHHHCCCEEEEHHHHHHCCCCEECCCCCHHHHHCHHHH EEIRDSQWRIHYHIPLYASPEPPLKSTEEFIQKTHNFLRSRKGPQPHLEVETYTWSVLPD HHHCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC HMKIPLAAQIARELHYIETL CCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MLSYCTNIHPAESWAETREALFTCVPRIRQELAAMDSPLKDLPLGIGLRLSARAAAELLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEHHHHHHHHHC TPHAAETLKSWLEDQGARVETLNGFPYGNFHGQRVKERVFQPDWTTPERFEYTCNLFRIL CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH ALIGDEQADRLTVSTLPASHSWFHADEERIFSRLDAMSGFLDVLGRQTGCLMQLGLEPEP HHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC FGHFHDTDGAIRFFNGLRNRSRRPELIERHLGLTYDTCHFAILREEPEFTLSAWEENNIA CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCEECCEEEEEEECCCCCEEEEECCCCEE LCKVQFSNALECRICGEEDLERLRQFDDGVYFHQTSILHREGAMLFPDLPNALAYGRDYA EEEEECCCCEEEEECCHHHHHHHHHHCCCEEEEHHHHHHCCCCEECCCCCHHHHHCHHHH EEIRDSQWRIHYHIPLYASPEPPLKSTEEFIQKTHNFLRSRKGPQPHLEVETYTWSVLPD HHHCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC HMKIPLAAQIARELHYIETL CCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA