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The map label for this gene is ycjS [C]

Identifier: 187734533

GI number: 187734533

Start: 21561

End: 23006

Strand: Direct

Name: ycjS [C]

Synonym: Amuc_0017

Alternate gene names: 187734533

Gene position: 21561-23006 (Clockwise)

Preceding gene: 187734532

Following gene: 187734534

Centisome position: 0.81

GC content: 59.2

Gene sequence:

>1446_bases
ATGGATAATTCATCATCACGCCGTCGTTTCCTTCAGACCCTGGGCCTGGCCACTGGCGCCCTGGCTGCCGGTTCCTTTGC
CAACGCCCAGGAAGTAGCCCCCCTGGCTCCCAAGAAAATCACCATTCCGGACCCGAATAACATCGGCCCCATGACCACGT
GGCCCCCGCGCAAGCCCGGCGCCATCTACATGGGCGGCTTCAGGGCTCCCAAGCTGGACAAGGTGCGTGTGGCCTTTGTC
GGCGTGGGTGAACGCGGTTCCATGCACGTGGGCCAGATGGCCGTTATAGAAGGTGCGGAAATTGTCGGCATTTGCGACCT
GTATGAAGACTGGGCCAAGCGCAGTGCGGACGTCGTGGAAAAGAAGACGGGCAAGCGCCCCCCCATTTTCACGAAAGGAC
CGGAAGACTACAAGCGCATGATGAAGGAAGTCAAGCCGGACGCCGTCATCGTCTGCCCCAGCTGGGAATGGCACTGCCGT
GTTACCTGCGACGTGATGAAGATGGGCGCCCACGCCTTTGTGGAAGTGCCTATGGCCGTCTCCATCAAGGAACTCTGGGA
AATCGTGGATACCTCCGAAGAAACCAGGAAGCACTGCATGATGATGGAAAACGTCAACTACGGACGTGAGGAACTCATGT
ACCTGAACATGGTGCGCCAGGGCGTCATTGGCGACCTGCTGTACGGAGAAGCCGCCTACATCCATGAACTGCGCGGACAG
ATGAAGCAGGTGGAACGCGGCACCGGTTCCTGGAGAACCTATCACTACGCCAAGCGCAACGGCAACGTGTATCCCACGCA
CGGCCTCGGCCCCATTGCCCAGTACATGAATCTGGCCCGCAAGGACGACTGCTTCGGCAGGCTCGTCTCCTTCTCCAGCC
CGGCCCTGGGCCGCGCCGCGTATGCCAAGAAAAATTTCCCGGCGGACCACAAGTGGAACAAGCTGGACTTTGCCTGCGGC
GATATGAATACCTCCATCATCAAGACCACCATGGGCCGCACCGTCCTGGTGGAATGGGATGAAACCAGTCCGCGCCCCTA
CTCCCGCCTGAATCTCATCCAGGGCACCCTGGGCACCTTGGCCGGCTTCCCGACCCGCGTAGCCGGGGAAAAGCTGGGCA
ACGGAAATTATCATGAATGGATTGAAGGCAAAGAAAAACTGGCCCCTATTTTTGAAAAGTACGATCACCCGCTCTGGAAG
AGAATCGGGCCGCTGGCCCTGAAGATGGGCGGTCACGGCGGCATGGACTTCGTGATGCTCTTCCGCATCATCGAATGCCT
CCGCAATGGCGAACCGATGGACCAGAACGTTTATGAAGGAGCTTTCTGGTCCTCCGTCTCCGAGCTTTCCGAATACTCCG
TGGCCCAGGGCGGCATGCCCCAGGTATTCCCGGACTTCACCCGCGGAGACTGGAAAACGACTGCTCCGCTGGGCATCGTC
CAGTAA

Upstream 100 bases:

>100_bases
CAGAGGAATGCATTTTTTTCACCATCTGTGAAAGAAAGATTCTCAAGCCTCAGTATCTATGGCAAACTGGGGATTCAAAT
CCTTTATATAATTACCATCC

Downstream 100 bases:

>100_bases
CAGCCGGCAATCTTCCCCGGCCCGAAGCTTTTGCGCCTCCATGGCGTGTTTCCGGGCCGGGGCAAAATGCCTCCTCTTCC
AAAAACAGGCCCAGCTTGCA

Product: oxidoreductase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MDNSSSRRRFLQTLGLATGALAAGSFANAQEVAPLAPKKITIPDPNNIGPMTTWPPRKPGAIYMGGFRAPKLDKVRVAFV
GVGERGSMHVGQMAVIEGAEIVGICDLYEDWAKRSADVVEKKTGKRPPIFTKGPEDYKRMMKEVKPDAVIVCPSWEWHCR
VTCDVMKMGAHAFVEVPMAVSIKELWEIVDTSEETRKHCMMMENVNYGREELMYLNMVRQGVIGDLLYGEAAYIHELRGQ
MKQVERGTGSWRTYHYAKRNGNVYPTHGLGPIAQYMNLARKDDCFGRLVSFSSPALGRAAYAKKNFPADHKWNKLDFACG
DMNTSIIKTTMGRTVLVEWDETSPRPYSRLNLIQGTLGTLAGFPTRVAGEKLGNGNYHEWIEGKEKLAPIFEKYDHPLWK
RIGPLALKMGGHGGMDFVMLFRIIECLRNGEPMDQNVYEGAFWSSVSELSEYSVAQGGMPQVFPDFTRGDWKTTAPLGIV
Q

Sequences:

>Translated_481_residues
MDNSSSRRRFLQTLGLATGALAAGSFANAQEVAPLAPKKITIPDPNNIGPMTTWPPRKPGAIYMGGFRAPKLDKVRVAFV
GVGERGSMHVGQMAVIEGAEIVGICDLYEDWAKRSADVVEKKTGKRPPIFTKGPEDYKRMMKEVKPDAVIVCPSWEWHCR
VTCDVMKMGAHAFVEVPMAVSIKELWEIVDTSEETRKHCMMMENVNYGREELMYLNMVRQGVIGDLLYGEAAYIHELRGQ
MKQVERGTGSWRTYHYAKRNGNVYPTHGLGPIAQYMNLARKDDCFGRLVSFSSPALGRAAYAKKNFPADHKWNKLDFACG
DMNTSIIKTTMGRTVLVEWDETSPRPYSRLNLIQGTLGTLAGFPTRVAGEKLGNGNYHEWIEGKEKLAPIFEKYDHPLWK
RIGPLALKMGGHGGMDFVMLFRIIECLRNGEPMDQNVYEGAFWSSVSELSEYSVAQGGMPQVFPDFTRGDWKTTAPLGIV
Q
>Mature_481_residues
MDNSSSRRRFLQTLGLATGALAAGSFANAQEVAPLAPKKITIPDPNNIGPMTTWPPRKPGAIYMGGFRAPKLDKVRVAFV
GVGERGSMHVGQMAVIEGAEIVGICDLYEDWAKRSADVVEKKTGKRPPIFTKGPEDYKRMMKEVKPDAVIVCPSWEWHCR
VTCDVMKMGAHAFVEVPMAVSIKELWEIVDTSEETRKHCMMMENVNYGREELMYLNMVRQGVIGDLLYGEAAYIHELRGQ
MKQVERGTGSWRTYHYAKRNGNVYPTHGLGPIAQYMNLARKDDCFGRLVSFSSPALGRAAYAKKNFPADHKWNKLDFACG
DMNTSIIKTTMGRTVLVEWDETSPRPYSRLNLIQGTLGTLAGFPTRVAGEKLGNGNYHEWIEGKEKLAPIFEKYDHPLWK
RIGPLALKMGGHGGMDFVMLFRIIECLRNGEPMDQNVYEGAFWSSVSELSEYSVAQGGMPQVFPDFTRGDWKTTAPLGIV
Q

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1091_AKKM8 (B2UL75)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001876645.1
- ProteinModelPortal:   B2UL75
- SMR:   B2UL75
- GeneID:   6275223
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0017
- HOGENOM:   HBG611861
- OMA:   TGSWRTY
- ProtClustDB:   CLSK901939
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- Gene3D:   G3DSA:3.40.50.720
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF01408 GFO_IDH_MocA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 53804; Mature: 53804

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS51318 TAT

Important sites: BINDING 106-106 BINDING 204-204 BINDING 233-233 BINDING 252-252 BINDING 264-264 BINDING 347-347

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSSSRRRFLQTLGLATGALAAGSFANAQEVAPLAPKKITIPDPNNIGPMTTWPPRKPG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC
AIYMGGFRAPKLDKVRVAFVGVGERGSMHVGQMAVIEGAEIVGICDLYEDWAKRSADVVE
EEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHH
KKTGKRPPIFTKGPEDYKRMMKEVKPDAVIVCPSWEWHCRVTCDVMKMGAHAFVEVPMAV
HHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHCCCHHEEECCHHH
SIKELWEIVDTSEETRKHCMMMENVNYGREELMYLNMVRQGVIGDLLYGEAAYIHELRGQ
HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MKQVERGTGSWRTYHYAKRNGNVYPTHGLGPIAQYMNLARKDDCFGRLVSFSSPALGRAA
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
YAKKNFPADHKWNKLDFACGDMNTSIIKTTMGRTVLVEWDETSPRPYSRLNLIQGTLGTL
HHHCCCCCCCCCCCEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
AGFPTRVAGEKLGNGNYHEWIEGKEKLAPIFEKYDHPLWKRIGPLALKMGGHGGMDFVML
HCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCHHHHHH
FRIIECLRNGEPMDQNVYEGAFWSSVSELSEYSVAQGGMPQVFPDFTRGDWKTTAPLGIV
HHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q
C
>Mature Secondary Structure
MDNSSSRRRFLQTLGLATGALAAGSFANAQEVAPLAPKKITIPDPNNIGPMTTWPPRKPG
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC
AIYMGGFRAPKLDKVRVAFVGVGERGSMHVGQMAVIEGAEIVGICDLYEDWAKRSADVVE
EEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHH
KKTGKRPPIFTKGPEDYKRMMKEVKPDAVIVCPSWEWHCRVTCDVMKMGAHAFVEVPMAV
HHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEHHHHHCCCHHEEECCHHH
SIKELWEIVDTSEETRKHCMMMENVNYGREELMYLNMVRQGVIGDLLYGEAAYIHELRGQ
HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MKQVERGTGSWRTYHYAKRNGNVYPTHGLGPIAQYMNLARKDDCFGRLVSFSSPALGRAA
HHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
YAKKNFPADHKWNKLDFACGDMNTSIIKTTMGRTVLVEWDETSPRPYSRLNLIQGTLGTL
HHHCCCCCCCCCCCEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
AGFPTRVAGEKLGNGNYHEWIEGKEKLAPIFEKYDHPLWKRIGPLALKMGGHGGMDFVML
HCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCHHHHHH
FRIIECLRNGEPMDQNVYEGAFWSSVSELSEYSVAQGGMPQVFPDFTRGDWKTTAPLGIV
HHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA