| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is outE [H]
Identifier: 186477815
GI number: 186477815
Start: 3451043
End: 3452590
Strand: Direct
Name: outE [H]
Synonym: Bphy_3071
Alternate gene names: 186477815
Gene position: 3451043-3452590 (Clockwise)
Preceding gene: 186477814
Following gene: 186477816
Centisome position: 99.19
GC content: 64.21
Gene sequence:
>1548_bases GTGAGCTCGACGCCGCTTTCCGGGCCGCACGCCTCTGCCGGATCATCGGACGATGCGCGCGGCGCGCCGGAAACGCCCCC GACCCAGACAGGACGCGAAGCGCCCTCTCCGCTTGCTGCGCGGCTCGTGCCGTACGGATTCGCGAAAAGCGGCCAGATCC TGGTCGCGCATCAGCACGCCGATTCGATGGAAGTCTGGATGAGCGAACGCACGAACCAGGCGGCGCTTGCCGAAGTCGTG CGCAATTTCGGCGCGATATCGGTCGTGCGCATGCCAGCGGACGAATTGGCGCAAGCCATCAACCAGGCGTACGCGCGTCA GGACGGGAGCGCTGCGCAGGTGGTCGGCGAAGTGGAAGGCGAAGTCGATTTGTCGCGTCTGATGCAGGACATTCCCGAAG TGGAAGACCTGCTGGAGTCCGAAGACGACGCGCCGATCATCCGCATGATCAACGCGCTGCTCACGCAGGCAGCGCGCGAA CAGGCATCGGATATTCACATCGAGCCATTCGAAAACGCATCGGTGGTTCGCTTTCGCGTCGACGGCACGTTGCGCGACGT CGTGCGTCCGAAGAAGGCGCTGCACGGCGCGTTGATTTCGCGGATCAAGATCATGGCGCAACTCGACATTGCCGAGAAGC GTCTGCCGCAGGATGGCCGTATCACGCTGCGCGTCGGCGGAAGGCCCGTCGACGTGCGCGTGTCGACGTTGCCGACGGGC CACGGCGAACGCGCCGTGCTGCGTCTGCTGGAAAAAGACGCGCAGCGTCTGAATCTCGAAGCGCTCGGCATGGCATCCGA CACGCTCAAGCAGTTCGACAAGCTGATTTCGCGTCCGCACGGCATCGTGCTCGTGACGGGCCCGACGGGCTCGGGCAAGA CGACCACGCTCTATGCGTCGATGTCGCGGCTCGAAACGGCGACGACCAACATCATGACCGTCGAAGACCCGATCGAATAC GATCTGCCGGGCATTGGTCAGACTCAGGTCAACGAGCGGATCGGCATGACGTTCGCCCGCGCGCTGCGTTCCATTCTTCG TCAGGATCCCGACATCATCATGATCGGTGAGATCCGCGATCTGGAAACGGCGCAGATTGCCGTGCAGGCATCGCTGACGG GACACCTGGTACTCGCTACGCTGCACACCAATGACGCCGCCTCCGCCGTCACGCGTCTGACGGATATGGGCGTCGAGCCC TATCTGCTCGCGTCGTCGCTGCTGGGCGTGCTGGCGCAGCGTCTCGTACGGCGGCTGTGTCCCGTGTGCAAGGAAGCGCG CGAAGAAGAAGGCGGCCGCAAGGTGTGGCATCCCGTCGGTTGCGACAAGTGCGGCCATTCGGGTTATGCGGGCCGTCGCG GCGTGTATGAACTGCTCAATGTCGACGAACCGATTCGCGCGCTGATCCACCGCAATGCTGCCGACGCCGAGATTGCCGAA GCCGGCCGTCATCAAGGCATGCGCACCTTGCGCGAGGACGGCGAACGATGGCTCGCGTCGGGCATGACGTCGCTCGAAGA AGTGATACGCGTGACGGGCGGGGTCTGA
Upstream 100 bases:
>100_bases AGCCCCAAGTTCAGCCGCAGACGCAACCGCAGCCGCTGCAGGTCGAACCGGCGCAAACCGTGCCGGCTCAACCGGCCACG AGTACGCAAAAGGTGCAGCC
Downstream 100 bases:
>100_bases GGGCATGCCGGCATTCCGCTTCGAAGCGATCGACGCCGCAGGCAAGGCGCAAAAAGGCGTACTCGATGCTGACAGCGCGC GCGGCGCGCGTACGCAGTTG
Product: general secretory pathway protein E
Products: NA
Alternate protein names: Pectic enzymes secretion protein outE; Type II traffic warden ATPase [H]
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MSSTPLSGPHASAGSSDDARGAPETPPTQTGREAPSPLAARLVPYGFAKSGQILVAHQHADSMEVWMSERTNQAALAEVV RNFGAISVVRMPADELAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAARE QASDIHIEPFENASVVRFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTG HGERAVLRLLEKDAQRLNLEALGMASDTLKQFDKLISRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEY DLPGIGQTQVNERIGMTFARALRSILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEP YLLASSLLGVLAQRLVRRLCPVCKEAREEEGGRKVWHPVGCDKCGHSGYAGRRGVYELLNVDEPIRALIHRNAADAEIAE AGRHQGMRTLREDGERWLASGMTSLEEVIRVTGGV
Sequences:
>Translated_515_residues MSSTPLSGPHASAGSSDDARGAPETPPTQTGREAPSPLAARLVPYGFAKSGQILVAHQHADSMEVWMSERTNQAALAEVV RNFGAISVVRMPADELAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAARE QASDIHIEPFENASVVRFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTG HGERAVLRLLEKDAQRLNLEALGMASDTLKQFDKLISRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEY DLPGIGQTQVNERIGMTFARALRSILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEP YLLASSLLGVLAQRLVRRLCPVCKEAREEEGGRKVWHPVGCDKCGHSGYAGRRGVYELLNVDEPIRALIHRNAADAEIAE AGRHQGMRTLREDGERWLASGMTSLEEVIRVTGGV >Mature_514_residues SSTPLSGPHASAGSSDDARGAPETPPTQTGREAPSPLAARLVPYGFAKSGQILVAHQHADSMEVWMSERTNQAALAEVVR NFGAISVVRMPADELAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQ ASDIHIEPFENASVVRFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGH GERAVLRLLEKDAQRLNLEALGMASDTLKQFDKLISRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEYD LPGIGQTQVNERIGMTFARALRSILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPY LLASSLLGVLAQRLVRRLCPVCKEAREEEGGRKVWHPVGCDKCGHSGYAGRRGVYELLNVDEPIRALIHRNAADAEIAEA GRHQGMRTLREDGERWLASGMTSLEEVIRVTGGV
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of pectate lyases and cellulases across the outer membrane [H]
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP E family [H]
Homologues:
Organism=Escherichia coli, GI1789723, Length=420, Percent_Identity=54.5238095238095, Blast_Score=459, Evalue=1e-130, Organism=Escherichia coli, GI1786296, Length=439, Percent_Identity=43.0523917995444, Blast_Score=339, Evalue=2e-94, Organism=Escherichia coli, GI87082188, Length=195, Percent_Identity=44.6153846153846, Blast_Score=120, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013369 - InterPro: IPR001482 [H]
Pfam domain/function: PF00437 GSPII_E [H]
EC number: NA
Molecular weight: Translated: 55848; Mature: 55717
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: PS00662 T2SP_E
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTPLSGPHASAGSSDDARGAPETPPTQTGREAPSPLAARLVPYGFAKSGQILVAHQHA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCC DSMEVWMSERTNQAALAEVVRNFGAISVVRMPADELAQAINQAYARQDGSAAQVVGEVEG CHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCC EVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRV CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE DGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCC HGERAVLRLLEKDAQRLNLEALGMASDTLKQFDKLISRPHGIVLVTGPTGSGKTTTLYAS CCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEHHH MSRLETATTNIMTVEDPIEYDLPGIGQTQVNERIGMTFARALRSILRQDPDIIMIGEIRD HHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC LETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRRLC CCHHHEEEEEECCCEEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH PVCKEAREEEGGRKVWHPVGCDKCGHSGYAGRRGVYELLNVDEPIRALIHRNAADAEIAE HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHH AGRHQGMRTLREDGERWLASGMTSLEEVIRVTGGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SSTPLSGPHASAGSSDDARGAPETPPTQTGREAPSPLAARLVPYGFAKSGQILVAHQHA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCC DSMEVWMSERTNQAALAEVVRNFGAISVVRMPADELAQAINQAYARQDGSAAQVVGEVEG CHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHCCC EVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRV CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE DGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCC HGERAVLRLLEKDAQRLNLEALGMASDTLKQFDKLISRPHGIVLVTGPTGSGKTTTLYAS CCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEHHH MSRLETATTNIMTVEDPIEYDLPGIGQTQVNERIGMTFARALRSILRQDPDIIMIGEIRD HHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC LETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRRLC CCHHHEEEEEECCCEEEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH PVCKEAREEEGGRKVWHPVGCDKCGHSGYAGRRGVYELLNVDEPIRALIHRNAADAEIAE HHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHH AGRHQGMRTLREDGERWLASGMTSLEEVIRVTGGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1429461 [H]