| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477792
Identifier: 186477792
GI number: 186477792
Start: 3423319
End: 3424533
Strand: Reverse
Name: 186477792
Synonym: Bphy_3047
Alternate gene names: NA
Gene position: 3424533-3423319 (Counterclockwise)
Preceding gene: 186477793
Following gene: 186477791
Centisome position: 98.43
GC content: 60.58
Gene sequence:
>1215_bases ATGAAAAGGAAGACACTCGCGCGGTTCGCATCCATTTGCTTTGCGGCCGCTGCAAGCGTCGCACTCACTGCGGGCAGCGC GCAAGCCGCCGACGATGCAGTGAAGATCGGTTTCATCACGGACATGTCGGGTCTCTATGCCGACATCGACGGACAGGGCG GTCTCGAAGCGATCCGCATGGCAGTCGCCGATTTCGGCGGCAAGGTCAACGGCAAGCCGATCCAGGTCGTCTATGCGGAC CACCAGAACAAGGCGGATATCGCGGCGTCGCGCGCGCGTGAATGGTTCGACCGCGATGGCGTCGACATGCTGGTGGGCGG CACGAACTCGGCAACGGGCCTGTCGATGAACCAGGTTGCGGGCGAAAAGCACAAGGTCTACATCAGTATCGGCGCAGGCG CCGATACGCTCACCAACGAGCAATGCACGCCGTACACCATCCACTATGCGTATGACACGACGGCGCTCGCTAAAGGCACG GGCTCGGCCGTGACGAAGCAGGGCGGCAAGACGTGGTACTTCCTGACGGCTGACTACGCGTTCGGCAAGGCGCTGGAGAA GAACACGGCTGACGTCGTCAAGGCGAACGGCGGTCAGGTGCTGGGCGAGGTGCGTCACCCGCTATCGGCCTCGGACTTCT CGTCGTTCCTGTTGCAGGCGCAAGCATCGAAGGCGCAGATTCTCGGCCTCGCCAATGCGGGCGGCGACACGATCAACTCG ATCAAGGCCGCGAAGGAATTCGGCGTGACAAAGACGATGAAGCTCGCCGCGCTGCTCGTCTTCATCAACGATATCCACAG TCTTGGCCTCGAGACGACGCAAAACCTCGTGCTGACTGACAGCTGGTACTGGAACAAGGACGCCACGACGCGCAAGTGGT CGCAGCGCTACTTCGACAAGATGAGGAAGATGCCGTCGAGCCTGCAGGCGGCCGACTACTCGGCGACCATGACGTACCTG AAGGCCGTGCAGACGGTTGGCTCGACGGATGCCGACAAGGTGATGGCGCAACTCAAGAAGCAGAAAATCGACGACTTCTT CGCGAAGGGCTACATCCGCCAGGACGGCAGCATGATCCATGACATGTACCTGATGCAGGTGAAGACGCCGGCTGAGTCGA AAGAGCCGTGGGACTACTACAAGATCACCGCTACGATTCCTGGCGAACAGGCTTTTACGACCAAGCAGGAAACGCGCTGC GCGCTGTGGAAATAA
Upstream 100 bases:
>100_bases AAGCAAAATGCCGGTGCTGCACGATTTGCTCGGGGTATGAGCCGGGGAGTGCGTACCTGATTGCCTCTGACAACCACAAC GCAGAACGAAGGAGACAGTA
Downstream 100 bases:
>100_bases GCGGCGCCGAGGATCGCTTGCCGGTTCGTCTGGAATAGACACGGCGGGCGTCGATGTTCTGCGTGCTGGACGTGTCGGGC CATCGCCGGCCTGACACGTG
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: UreA/Short-Chain Amide ABC Transporter; ABC-Type Transporter Periplasmic Component; Branched-Chain Amino Acid ABC Transporter; ABC-Type Transporter Periplasmic; Tat Pathway Signal Sequence Domain-Containing Protein; ABC Transporter; Amino Acid ABC Transporter Periplasmic Protein; Inner-Membrane Translocator; ABC Transporter Periplasmic Protein
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MKRKTLARFASICFAAAASVALTAGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGGKVNGKPIQVVYAD HQNKADIAASRAREWFDRDGVDMLVGGTNSATGLSMNQVAGEKHKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGT GSAVTKQGGKTWYFLTADYAFGKALEKNTADVVKANGGQVLGEVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINS IKAAKEFGVTKTMKLAALLVFINDIHSLGLETTQNLVLTDSWYWNKDATTRKWSQRYFDKMRKMPSSLQAADYSATMTYL KAVQTVGSTDADKVMAQLKKQKIDDFFAKGYIRQDGSMIHDMYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKQETRC ALWK
Sequences:
>Translated_404_residues MKRKTLARFASICFAAAASVALTAGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGGKVNGKPIQVVYAD HQNKADIAASRAREWFDRDGVDMLVGGTNSATGLSMNQVAGEKHKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGT GSAVTKQGGKTWYFLTADYAFGKALEKNTADVVKANGGQVLGEVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINS IKAAKEFGVTKTMKLAALLVFINDIHSLGLETTQNLVLTDSWYWNKDATTRKWSQRYFDKMRKMPSSLQAADYSATMTYL KAVQTVGSTDADKVMAQLKKQKIDDFFAKGYIRQDGSMIHDMYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKQETRC ALWK >Mature_404_residues MKRKTLARFASICFAAAASVALTAGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGGKVNGKPIQVVYAD HQNKADIAASRAREWFDRDGVDMLVGGTNSATGLSMNQVAGEKHKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGT GSAVTKQGGKTWYFLTADYAFGKALEKNTADVVKANGGQVLGEVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINS IKAAKEFGVTKTMKLAALLVFINDIHSLGLETTQNLVLTDSWYWNKDATTRKWSQRYFDKMRKMPSSLQAADYSATMTYL KAVQTVGSTDADKVMAQLKKQKIDDFFAKGYIRQDGSMIHDMYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKQETRC ALWK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43840; Mature: 43840
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKTLARFASICFAAAASVALTAGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRM CCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCHHHHHH AVADFGGKVNGKPIQVVYADHQNKADIAASRAREWFDRDGVDMLVGGTNSATGLSMNQVA HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHC GEKHKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYA CCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHCCCCCEEEEEEECCH FGKALEKNTADVVKANGGQVLGEVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINS HHHHHHCCCHHEEECCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH IKAAKEFGVTKTMKLAALLVFINDIHSLGLETTQNLVLTDSWYWNKDATTRKWSQRYFDK HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEECCCCCHHHHHHHHHHH MRKMPSSLQAADYSATMTYLKAVQTVGSTDADKVMAQLKKQKIDDFFAKGYIRQDGSMIH HHCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCEEE DMYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKQETRCALWK EEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCHHCHHCCCC >Mature Secondary Structure MKRKTLARFASICFAAAASVALTAGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRM CCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCEEECCCCCCHHHHHH AVADFGGKVNGKPIQVVYADHQNKADIAASRAREWFDRDGVDMLVGGTNSATGLSMNQVA HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHC GEKHKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYA CCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHCCCCCEEEEEEECCH FGKALEKNTADVVKANGGQVLGEVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINS HHHHHHCCCHHEEECCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHH IKAAKEFGVTKTMKLAALLVFINDIHSLGLETTQNLVLTDSWYWNKDATTRKWSQRYFDK HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECEEECCCCCHHHHHHHHHHH MRKMPSSLQAADYSATMTYLKAVQTVGSTDADKVMAQLKKQKIDDFFAKGYIRQDGSMIH HHCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEECCCCCEEE DMYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKQETRCALWK EEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA