Definition Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession NC_010622
Length 3,479,187

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The map label for this gene is braD [H]

Identifier: 186477791

GI number: 186477791

Start: 3422304

End: 3423188

Strand: Reverse

Name: braD [H]

Synonym: Bphy_3046

Alternate gene names: 186477791

Gene position: 3423188-3422304 (Counterclockwise)

Preceding gene: 186477792

Following gene: 186477790

Centisome position: 98.39

GC content: 61.24

Gene sequence:

>885_bases
ATGGATATCTTTGGCATACCGCTACCGGCGATGCTCAGCCAGTTGCTGCTCGGTCTCGTGAACGGTTCGTTCTACGCGAT
CCTGAGTCTGGGCCTGGCCGTGATCTTCGGGCTGCTCAACGTGATCAACTTCGCTCACGGCGCGTTGTTCATGCTGGGTG
CGATGCTCACGTGGATGGGCCTGTCGTATTTCAGTCTGCCGTACTGGGTGATGCTGGTGCTTGCGCCCGTTCTCGTCGGG
CTGTTCGGCGTCGCGATCGAACGTTCGATGCTGCGCTGGCTGTACAAGCTCGATCACCTCTATGGCCTGCTGCTCACATT
CGGTCTCACGCTCGTCGTCGAAGGCGTGTTCCGTTCGATCTATGGTTCATCGGGGCAGCCGTACGACGTGCCGTCGGCGC
TTTCGGGCGCAACCAATCTTGGCTTCATGTTCCTGCCGAACTATCGGGCGTGGGTCGTCGTCGCGTCGCTGATCGTATGT
TTCGCGACATGGTTCGTAATCGAGAAGACACGCCTCGGCGCGTACCTGCGCGCGGGCACGGAGAACCCGAAGCTCGTCGA
AGCGTTCGGCGTGAACGTGCCGATGATGGTCACGCTTACGTATGGCTTCGGCGTCGCGCTGGCGGCGTTCGCCGGCGTGC
TTGCGGCGCCCGTGATCCAGGTGTCGCCGCTGATGGGCCAGCCGATGATCATCACCGTGTTCGCCGTCGTCGTGATCGGC
GGCATGGGCTCGATCATGGGCTCGATTCTCACGGGGCTGCTACTCGGCGTAATCGAAGGGTTCACGCGCGTGTTCTATCC
GGAAGCCTCGGCGACCGTGGTCTTCGTAATCATGGCGCTCGTTTTGCTCGTGCGTCCGGCGGGTCTCTTCGGCAAGGAAA
AATGA

Upstream 100 bases:

>100_bases
TGGAATAGACACGGCGGGCGTCGATGTTCTGCGTGCTGGACGTGTCGGGCCATCGCCGGCCTGACACGTGCATGCCGCTT
TCACTTTGACGACGGCTTCA

Downstream 100 bases:

>100_bases
TGCAGAGAAAAGCGCTCTACGTTCTGCTGCTGATCGCGCTCATCGTTGCGCCGTTCGCCGGCGCGTATCCCGTGTTCGTG
ATGAAGGTGCTGTGCTTCGC

Product: inner-membrane translocator

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDIFGIPLPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAMLTWMGLSYFSLPYWVMLVLAPVLVG
LFGVAIERSMLRWLYKLDHLYGLLLTFGLTLVVEGVFRSIYGSSGQPYDVPSALSGATNLGFMFLPNYRAWVVVASLIVC
FATWFVIEKTRLGAYLRAGTENPKLVEAFGVNVPMMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGQPMIITVFAVVVIG
GMGSIMGSILTGLLLGVIEGFTRVFYPEASATVVFVIMALVLLVRPAGLFGKEK

Sequences:

>Translated_294_residues
MDIFGIPLPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAMLTWMGLSYFSLPYWVMLVLAPVLVG
LFGVAIERSMLRWLYKLDHLYGLLLTFGLTLVVEGVFRSIYGSSGQPYDVPSALSGATNLGFMFLPNYRAWVVVASLIVC
FATWFVIEKTRLGAYLRAGTENPKLVEAFGVNVPMMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGQPMIITVFAVVVIG
GMGSIMGSILTGLLLGVIEGFTRVFYPEASATVVFVIMALVLLVRPAGLFGKEK
>Mature_294_residues
MDIFGIPLPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAMLTWMGLSYFSLPYWVMLVLAPVLVG
LFGVAIERSMLRWLYKLDHLYGLLLTFGLTLVVEGVFRSIYGSSGQPYDVPSALSGATNLGFMFLPNYRAWVVVASLIVC
FATWFVIEKTRLGAYLRAGTENPKLVEAFGVNVPMMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGQPMIITVFAVVVIG
GMGSIMGSILTGLLLGVIEGFTRVFYPEASATVVFVIMALVLLVRPAGLFGKEK

Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]

COG id: COG0559

COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789866, Length=307, Percent_Identity=26.7100977198697, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31554; Mature: 31554

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFGIPLPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAMLTWMG
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYFSLPYWVMLVLAPVLVGLFGVAIERSMLRWLYKLDHLYGLLLTFGLTLVVEGVFRSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGSSGQPYDVPSALSGATNLGFMFLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGT
HCCCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ENPKLVEAFGVNVPMMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGQPMIITVFAVVVIG
CCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GMGSIMGSILTGLLLGVIEGFTRVFYPEASATVVFVIMALVLLVRPAGLFGKEK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDIFGIPLPAMLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAMLTWMG
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYFSLPYWVMLVLAPVLVGLFGVAIERSMLRWLYKLDHLYGLLLTFGLTLVVEGVFRSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YGSSGQPYDVPSALSGATNLGFMFLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGT
HCCCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ENPKLVEAFGVNVPMMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGQPMIITVFAVVVIG
CCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GMGSIMGSILTGLLLGVIEGFTRVFYPEASATVVFVIMALVLLVRPAGLFGKEK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2120183; 10984043; 2509433 [H]