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The map label for this gene is ydgJ [H]

Identifier: 186477747

GI number: 186477747

Start: 3365363

End: 3366412

Strand: Direct

Name: ydgJ [H]

Synonym: Bphy_3001

Alternate gene names: 186477747

Gene position: 3365363-3366412 (Clockwise)

Preceding gene: 186477745

Following gene: 186477748

Centisome position: 96.73

GC content: 65.62

Gene sequence:

>1050_bases
ATGTCTTCATCGCTGAAAATTGGCTTGATGGGCTACGGCTTTGCCGGCGCCACCTTTCACGCGCCGGTGATCGAACACTG
CGGACGCGCCAGCGTCGCGGCAATCGCCACGGGACAACCGGACAAGGCGCGCGCCGATTATCCGGACGCGAAGATCGTCG
CGGATATCGATGCGCTGCTCGGGTTGCCGGGGATCGAATGCGTCGTGATCGCGACGCCCAACGACACGCACTTCGAGCTC
GCGCGCCGCACGCTCGAGGCGGACAAGCACGTGGTCGTCGACAAGCCCGTCACGCTGTCGGCGGCCGACGCGCGCACGCT
TGCCGATGTCGCACAAAGCAAGGGGCTGCTGTTTGCGCCGTTCCACAACCGACGCTGGGACGGCGATTTCATGACGGTAC
GCGATCTGCTCGCGAGCGGCGAACTGGGCCGCGTCACGCACTTCGAATCGCACTTCGACCGGTTCCGCCCGGGCATCCGG
CAGCGCTGGCGTGAAGAGGCGTCACGCGGCGGCGGCCTGCTGTTCGATCTCGGTCCGCATCTGATCGATCAGGCGCTGAC
GCTGTTCGGCGCGCCCGAAACCGTCTACGCGACGGTGAAGGCGTATCGCGACAATGCGAGCGCGCCGGATTACGTGCATC
TGCTGCTCGGTTACGCGAATCACGAAGTCGTGCTGCACGCGAGCGCGCTGACTGCGCTCGTCGCGCCGCGCTACACGATC
CACGGCACGCGCGGCAGTTACGTGAAATATGGTCTGGATACGCAGGAAGATCAGCTGAAAGCCGGCTTGCGTCCGGGCGA
TGCCGGTTTCGGCAGCGGCAACGACGCGGGCACGCTGCGCGTGTTGGATGGCGAGCAGGAAGTGCAGCGCGAACTGCCGA
CGCGCGACGGCGCTTATGCCGGCTTCTACCGTGCGCTGGCGGCGTCGATTCATGACGGCGCGCCGTTCCCCATCAGCACC
CAGGATGCCGTCGACGTGATGGCGATCATCGAGCTGGCCAATCGCAGCGAGAAGGAAGGCATGCGACTGGCGTTCAAACG
CGGCGCATGA

Upstream 100 bases:

>100_bases
CCGCGCGCCGACGCGTGCGGCATGGCGGGAAGCGCCGCCGTGCCACAATTGCGGCGTTGCGCGCCGCCCCCGTGGCGCGC
CGGTTTTGCACGGAACACGC

Downstream 100 bases:

>100_bases
CGGGCGGAAAACTTTGCGCCTCCGGCTTCGCCTCGTCCTGTTCCAGGCTGGATCTTGCTCCCGCCTCTGTTGCGCCCTCG
GTCGCTTCCGCAGGGCGCGA

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSSSLKIGLMGYGFAGATFHAPVIEHCGRASVAAIATGQPDKARADYPDAKIVADIDALLGLPGIECVVIATPNDTHFEL
ARRTLEADKHVVVDKPVTLSAADARTLADVAQSKGLLFAPFHNRRWDGDFMTVRDLLASGELGRVTHFESHFDRFRPGIR
QRWREEASRGGGLLFDLGPHLIDQALTLFGAPETVYATVKAYRDNASAPDYVHLLLGYANHEVVLHASALTALVAPRYTI
HGTRGSYVKYGLDTQEDQLKAGLRPGDAGFGSGNDAGTLRVLDGEQEVQRELPTRDGAYAGFYRALAASIHDGAPFPIST
QDAVDVMAIIELANRSEKEGMRLAFKRGA

Sequences:

>Translated_349_residues
MSSSLKIGLMGYGFAGATFHAPVIEHCGRASVAAIATGQPDKARADYPDAKIVADIDALLGLPGIECVVIATPNDTHFEL
ARRTLEADKHVVVDKPVTLSAADARTLADVAQSKGLLFAPFHNRRWDGDFMTVRDLLASGELGRVTHFESHFDRFRPGIR
QRWREEASRGGGLLFDLGPHLIDQALTLFGAPETVYATVKAYRDNASAPDYVHLLLGYANHEVVLHASALTALVAPRYTI
HGTRGSYVKYGLDTQEDQLKAGLRPGDAGFGSGNDAGTLRVLDGEQEVQRELPTRDGAYAGFYRALAASIHDGAPFPIST
QDAVDVMAIIELANRSEKEGMRLAFKRGA
>Mature_348_residues
SSSLKIGLMGYGFAGATFHAPVIEHCGRASVAAIATGQPDKARADYPDAKIVADIDALLGLPGIECVVIATPNDTHFELA
RRTLEADKHVVVDKPVTLSAADARTLADVAQSKGLLFAPFHNRRWDGDFMTVRDLLASGELGRVTHFESHFDRFRPGIRQ
RWREEASRGGGLLFDLGPHLIDQALTLFGAPETVYATVKAYRDNASAPDYVHLLLGYANHEVVLHASALTALVAPRYTIH
GTRGSYVKYGLDTQEDQLKAGLRPGDAGFGSGNDAGTLRVLDGEQEVQRELPTRDGAYAGFYRALAASIHDGAPFPISTQ
DAVDVMAIIELANRSEKEGMRLAFKRGA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=345, Percent_Identity=44.6376811594203, Blast_Score=303, Evalue=9e-84,
Organism=Escherichia coli, GI1789848, Length=331, Percent_Identity=33.2326283987915, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1787574, Length=198, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37694; Mature: 37563

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSLKIGLMGYGFAGATFHAPVIEHCGRASVAAIATGQPDKARADYPDAKIVADIDALL
CCCCEEEEEEEECCCCCEECCHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHEEHHHHHH
GLPGIECVVIATPNDTHFELARRTLEADKHVVVDKPVTLSAADARTLADVAQSKGLLFAP
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCEEECCHHHHHHHHHHCCCEEEEC
FHNRRWDGDFMTVRDLLASGELGRVTHFESHFDRFRPGIRQRWREEASRGGGLLFDLGPH
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCHH
LIDQALTLFGAPETVYATVKAYRDNASAPDYVHLLLGYANHEVVLHASALTALVAPRYTI
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEE
HGTRGSYVKYGLDTQEDQLKAGLRPGDAGFGSGNDAGTLRVLDGEQEVQRELPTRDGAYA
ECCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCHH
GFYRALAASIHDGAPFPISTQDAVDVMAIIELANRSEKEGMRLAFKRGA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCC
>Mature Secondary Structure 
SSSLKIGLMGYGFAGATFHAPVIEHCGRASVAAIATGQPDKARADYPDAKIVADIDALL
CCCEEEEEEEECCCCCEECCHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHEEHHHHHH
GLPGIECVVIATPNDTHFELARRTLEADKHVVVDKPVTLSAADARTLADVAQSKGLLFAP
CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCCEEECCHHHHHHHHHHCCCEEEEC
FHNRRWDGDFMTVRDLLASGELGRVTHFESHFDRFRPGIRQRWREEASRGGGLLFDLGPH
CCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCHH
LIDQALTLFGAPETVYATVKAYRDNASAPDYVHLLLGYANHEVVLHASALTALVAPRYTI
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEE
HGTRGSYVKYGLDTQEDQLKAGLRPGDAGFGSGNDAGTLRVLDGEQEVQRELPTRDGAYA
ECCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCHH
GFYRALAASIHDGAPFPISTQDAVDVMAIIELANRSEKEGMRLAFKRGA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]