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The map label for this gene is yggS [C]

Identifier: 186477265

GI number: 186477265

Start: 2835852

End: 2836550

Strand: Direct

Name: yggS [C]

Synonym: Bphy_2517

Alternate gene names: 186477265

Gene position: 2835852-2836550 (Clockwise)

Preceding gene: 186477264

Following gene: 186477266

Centisome position: 81.51

GC content: 65.52

Gene sequence:

>699_bases
ATGCCCGACCTCGCCCACAATCTCGACGCAGTGCATCAGCGCATCGCCCTCGCCGCGCGGATCGCGGGCCGCGATCCTGG
CTCCATAGCGCTTCTTGCCGTCTCGAAGACGTTCCCAGCCGAAGACGTTCGCGCCGCGCATGTCGCCGGGCAGCGTGCGT
TCGGCGAAAACTACGTGCAGGAAGCGCTGACCAAGATCGGAGCGCTGTCCGATCTGCGTGCCTCGCTCGCCTGGCATTTC
ATCGGGCCGCTGCAATCGAACAAGACGCGTCCCGTCGCCGAGCATTTCGACTGGGTACATTCCGTCGACCGGTTGAAGAT
CGCGCAGCGTTTGTCGGAGCAGCGGCCGGATACGGCGCCTGCGCTCAATGTGTGCCTGCAGGTCAATATCAGCGGCGAAG
CCTCGAAGAGCGGCGTTACGCCTGAGGAAGCCCTCGACGTCGCGCGCCAGGTCGCTGCGTTGCCCAGGTTGCGTCTGCGC
GGCCTGATGGCGATTCCCGAACCGGCAGGCGACGTCGAACAACAGCGCGTGCCGCATCGCGCGTTGCGCGAGCTGTTCGA
CAGGTTGCGGGCACAAGGCCTGGATCTCGACACGCTGTCGATGGGCATGTCCGGCGATCTCGAAGCGGCCGTGCTCGAAG
GCGCGACTATCGTACGCGTCGGCACCGCGATCTTCGGCGCCCGCGATTACTCTCACTGA

Upstream 100 bases:

>100_bases
TGCGGCACGTTCGTGCACAACCTGGCCGATCGGCCAGGTCGTGGCGCGCGGGCAGCGTCCGTATAATTCGAATCGTCGCC
CCTCGCCCCGGTACCGCTTC

Downstream 100 bases:

>100_bases
ACTTCACGAACATCATGAAAATTGCCTTCATCGGCGGCGGCAACATGGCCGCCGCGCTCATCGGCGGAATGATCAAGCGC
GGCGTGGCGCCGGCTGATAT

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MPDLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQEALTKIGALSDLRASLAWHF
IGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAPALNVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLR
GLMAIPEPAGDVEQQRVPHRALRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYSH

Sequences:

>Translated_232_residues
MPDLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQEALTKIGALSDLRASLAWHF
IGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAPALNVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLR
GLMAIPEPAGDVEQQRVPHRALRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYSH
>Mature_231_residues
PDLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQEALTKIGALSDLRASLAWHFI
GPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAPALNVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRG
LMAIPEPAGDVEQQRVPHRALRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYSH

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=41.0041841004184, Blast_Score=132, Evalue=2e-31,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=56.4655172413793, Blast_Score=248, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17533025, Length=213, Percent_Identity=35.2112676056338, Blast_Score=103, Evalue=7e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=38.1818181818182, Blast_Score=115, Evalue=7e-27,
Organism=Drosophila melanogaster, GI45550861, Length=221, Percent_Identity=37.5565610859729, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25109; Mature: 24978

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EALTKIGALSDLRASLAWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ALNVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRGLMAIPEPAGDVEQQRVPHR
CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHH
ALRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYSH
HHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCHHEEHHHHHHCCCCCCC
>Mature Secondary Structure 
PDLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EALTKIGALSDLRASLAWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ALNVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRGLMAIPEPAGDVEQQRVPHR
CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHH
ALRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYSH
HHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHCCCHHEEHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]