| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is mutL [H]
Identifier: 186477234
GI number: 186477234
Start: 2793941
End: 2796016
Strand: Direct
Name: mutL [H]
Synonym: Bphy_2485
Alternate gene names: 186477234
Gene position: 2793941-2796016 (Clockwise)
Preceding gene: 186477232
Following gene: 186477235
Centisome position: 80.3
GC content: 67.44
Gene sequence:
>2076_bases ATGTCCGCGATCCCCGAATCTTCCGAAACGCGCGCCGACGCGCCCGCCGCTCACGCGGCTGCGAGCCGCGACGCCGGCGC AGCCGACAACGCCCTCACGCCGCGTCCGCCGCGCGCCATCCAGCCGCTGCCCGACCAGTTGATCAGCCAGATCGCGGCGG GCGAAGTGGTCGAGCGGCCGGCGTCCGTCGTCAAGGAACTGCTGGAGAACGCGCTCGACGCGGGCGCGACGGCGCTGCGC ATCCTGCTCGACGAAGGCGGCGTCAAGCGCATTTCGATCACCGACGACGGCTGCGGCATTCCCGAAGGGGAACTGGCGCT CGCGCTGATGCGCCACGCGACGAGCAAGATCCGCTCGCTCGCGGAACTCGAAGCAGTCGCGACACTCGGGTTTCGCGGCG AAGCGCTGGCATCGATCGCGTCGGTGTCGGAAATGCACATCACGAGCCGCACTGAGACCGTTTCGCACGCGACGCGCATC GATGCGCAGACGGGCGCGCTCTCGCCGGCAGCGGGCACGCGCGGCACGACGATCGAAGTGCGCGAGCTTTATTTCAATAC GCCCGCGCGCCGCAAATTCCTCAAGAGCGAGCAGACGGAGCTCGGCCATTGCCTCGAGATGATCCGGCGCGCAGCGCTCG CGCGGCCTGACGTCGCGATTTCAGTGCTGCATAACGGGCGCGCCGTTGAGCACTGGAACGCAAGCGATCCCGCGACGCGC GTCGCGAAGATCCTTGGCGAGACGTTCGCAAGTGCGCATCTGCCGCTCGACGAATCGGCGGGACCGCTCGCCGTGTACGG CTGCGCCGGCCTGCCGACCGCGAGCCGCGGACGCGCGGATCAGCAGTATTTCTTCGTCAACGGCCGCTTCGTGCGCGACA AGCTGCTCACGCATGCGGTCCGCGCCGCGTATGAGGACGTTCTGCATGGCGATCGCTATCCGTCCTATGTGCTGTTCCTC GATCTGCCGCCCGAGGCCGTCGACGTGAACGTGCATCCGTCGAAAATCGAGGTGCGCTTCCGCGACTCGCGCTCGATTCA CCAGTTCGTGTTCCATGCCGTGCAGCGCGCGCTGGCCAGACACGCGGGCGCATCGCCGGAAACGACGTCGGGCGGTCATG CTGCGCGTATCGAACCGATGCCATCCGCGTCGCCCGTGTCGACTTTTTCGACCGGCACGCCTGCTTCGTTCGGCTCCGCG CCGCTCGGTGCCGGCTTCAGGGTCGGCGACGGCGGCGGCTCGCAGCCGGGCAACACGTGGATGCGCCAGGCGCGCATGAC GCAGGGCACGCTGCCCGTCGCACAGCCGCTCGCGCTTTACGACGCGCTATTCGGCCGCAAAGATTCAGGCGCCGGCACAT CGCAAGGCACGACCTCCCTCGAATTGCGCGATGCCGCGGACGCGGCTGACGGCGCGGTTGCGCCCTTGCCTTTCGGGAGC TTCGCAACCGCCCAGCCGTTTGCAGCAGCGCAGAGTTTCAATCCGCACGACGAGCAGCCGCTCGGCTTCGCGCTTGGCCA GATCCACGGTATCTATGTGCTCGCGCAGAACGCGCGTGGACTCGTGATCGTCGACATGCACGCGGCGCATGAACGCATCC TGTACGAGCAGTTCAAGAATGCGCTCGCCGATCGCGCGATCGCGGTGCAGCCGCTGCTGATTCCCGTTTCGATGACAGCG GACGCCGTCGAAATCGGCGTGGTCGAAGAAGAGCGTGAGACGCTCGATGCGCTCGGCTTCGATCTCGCCGTGCTGTCGCC GACGACCATCGCGATCCGCGCCGTCCCTGCGCTCCTGAAGGACGCGGATCTGCAGGCGCTGGCGCGCGCGGTCCTGTCCG ATCTGCATGCGTACGGCGGCTCGCGCGTGCTGACTGAGCGCCAGCATGAATTGCTGGGCACGCTCGCGTGCCATCACGCC GTGCGCGCGAACCGGCGGCTGACGCTCGATGAAATGAATGCGCTGTTGCGGCAGATGGAAGCGACGGAACGCGCCGATCA ATGCAATCACGGGCGCCCGACGTGGTATCAGCTGACGCTCGCCGATCTCGACCGGCTGTTCATGCGCGGTCAGTGA
Upstream 100 bases:
>100_bases TGACCGCGCCATGATACCGAAAGTGCCATGACCTCTTGAAAAAAAGTCGCCGGCGGTTTCCCCGTTCAGACGGTTTGCGA CGAATCGCTATAATTTCGCC
Downstream 100 bases:
>100_bases GCGGCTCCGTTTCTTTCATTCGCTCACGCTTTTCATGATGCAGCGCGCACCGCAACCCATCGCCTGTCTTCTCGGCCCGA CCGCCTCCGGCAAGACGGCG
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 690
Protein sequence:
>691_residues MSAIPESSETRADAPAAHAAASRDAGAADNALTPRPPRAIQPLPDQLISQIAAGEVVERPASVVKELLENALDAGATALR ILLDEGGVKRISITDDGCGIPEGELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVSEMHITSRTETVSHATRI DAQTGALSPAAGTRGTTIEVRELYFNTPARRKFLKSEQTELGHCLEMIRRAALARPDVAISVLHNGRAVEHWNASDPATR VAKILGETFASAHLPLDESAGPLAVYGCAGLPTASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFL DLPPEAVDVNVHPSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTSGGHAARIEPMPSASPVSTFSTGTPASFGSA PLGAGFRVGDGGGSQPGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGAGTSQGTTSLELRDAADAADGAVAPLPFGS FATAQPFAAAQSFNPHDEQPLGFALGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKNALADRAIAVQPLLIPVSMTA DAVEIGVVEEERETLDALGFDLAVLSPTTIAIRAVPALLKDADLQALARAVLSDLHAYGGSRVLTERQHELLGTLACHHA VRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLADLDRLFMRGQ
Sequences:
>Translated_691_residues MSAIPESSETRADAPAAHAAASRDAGAADNALTPRPPRAIQPLPDQLISQIAAGEVVERPASVVKELLENALDAGATALR ILLDEGGVKRISITDDGCGIPEGELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVSEMHITSRTETVSHATRI DAQTGALSPAAGTRGTTIEVRELYFNTPARRKFLKSEQTELGHCLEMIRRAALARPDVAISVLHNGRAVEHWNASDPATR VAKILGETFASAHLPLDESAGPLAVYGCAGLPTASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFL DLPPEAVDVNVHPSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTSGGHAARIEPMPSASPVSTFSTGTPASFGSA PLGAGFRVGDGGGSQPGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGAGTSQGTTSLELRDAADAADGAVAPLPFGS FATAQPFAAAQSFNPHDEQPLGFALGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKNALADRAIAVQPLLIPVSMTA DAVEIGVVEEERETLDALGFDLAVLSPTTIAIRAVPALLKDADLQALARAVLSDLHAYGGSRVLTERQHELLGTLACHHA VRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLADLDRLFMRGQ >Mature_690_residues SAIPESSETRADAPAAHAAASRDAGAADNALTPRPPRAIQPLPDQLISQIAAGEVVERPASVVKELLENALDAGATALRI LLDEGGVKRISITDDGCGIPEGELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVSEMHITSRTETVSHATRID AQTGALSPAAGTRGTTIEVRELYFNTPARRKFLKSEQTELGHCLEMIRRAALARPDVAISVLHNGRAVEHWNASDPATRV AKILGETFASAHLPLDESAGPLAVYGCAGLPTASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLD LPPEAVDVNVHPSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTSGGHAARIEPMPSASPVSTFSTGTPASFGSAP LGAGFRVGDGGGSQPGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGAGTSQGTTSLELRDAADAADGAVAPLPFGSF ATAQPFAAAQSFNPHDEQPLGFALGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKNALADRAIAVQPLLIPVSMTAD AVEIGVVEEERETLDALGFDLAVLSPTTIAIRAVPALLKDADLQALARAVLSDLHAYGGSRVLTERQHELLGTLACHHAV RANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLADLDRLFMRGQ
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family [H]
Homologues:
Organism=Homo sapiens, GI4557757, Length=330, Percent_Identity=34.5454545454545, Blast_Score=185, Evalue=1e-46, Organism=Homo sapiens, GI4505911, Length=351, Percent_Identity=28.7749287749288, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI189458898, Length=351, Percent_Identity=28.7749287749288, Blast_Score=144, Evalue=4e-34, Organism=Homo sapiens, GI4505913, Length=340, Percent_Identity=26.7647058823529, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI310128478, Length=340, Percent_Identity=26.7647058823529, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI189458896, Length=341, Percent_Identity=29.0322580645161, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI310128480, Length=300, Percent_Identity=24, Blast_Score=96, Evalue=8e-20, Organism=Homo sapiens, GI263191589, Length=235, Percent_Identity=31.063829787234, Blast_Score=94, Evalue=3e-19, Organism=Escherichia coli, GI1790612, Length=582, Percent_Identity=38.8316151202749, Blast_Score=333, Evalue=3e-92, Organism=Caenorhabditis elegans, GI71991825, Length=320, Percent_Identity=34.375, Blast_Score=162, Evalue=5e-40, Organism=Caenorhabditis elegans, GI17562796, Length=411, Percent_Identity=25.0608272506083, Blast_Score=137, Evalue=2e-32, Organism=Saccharomyces cerevisiae, GI6323819, Length=407, Percent_Identity=30.7125307125307, Blast_Score=178, Evalue=2e-45, Organism=Saccharomyces cerevisiae, GI6324247, Length=355, Percent_Identity=25.3521126760563, Blast_Score=114, Evalue=7e-26, Organism=Saccharomyces cerevisiae, GI6325093, Length=718, Percent_Identity=20.1949860724234, Blast_Score=99, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6323063, Length=146, Percent_Identity=29.4520547945205, Blast_Score=70, Evalue=8e-13, Organism=Drosophila melanogaster, GI17136968, Length=312, Percent_Identity=34.9358974358974, Blast_Score=170, Evalue=3e-42, Organism=Drosophila melanogaster, GI17136970, Length=356, Percent_Identity=25.561797752809, Blast_Score=104, Evalue=3e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C [H]
EC number: NA
Molecular weight: Translated: 73792; Mature: 73661
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAIPESSETRADAPAAHAAASRDAGAADNALTPRPPRAIQPLPDQLISQIAAGEVVERP CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ASVVKELLENALDAGATALRILLDEGGVKRISITDDGCGIPEGELALALMRHATSKIRSL HHHHHHHHHHHHHCCHHEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH AELEAVATLGFRGEALASIASVSEMHITSRTETVSHATRIDAQTGALSPAAGTRGTTIEV HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE RELYFNTPARRKFLKSEQTELGHCLEMIRRAALARPDVAISVLHNGRAVEHWNASDPATR HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHH VAKILGETFASAHLPLDESAGPLAVYGCAGLPTASRGRADQQYFFVNGRFVRDKLLTHAV HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH RAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVHPSKIEVRFRDSRSIHQFVFHAVQRALAR HHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHH HAGASPETTSGGHAARIEPMPSASPVSTFSTGTPASFGSAPLGAGFRVGDGGGSQPGNTW HCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH MRQARMTQGTLPVAQPLALYDALFGRKDSGAGTSQGTTSLELRDAADAADGAVAPLPFGS HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC FATAQPFAAAQSFNPHDEQPLGFALGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKN CCCCCCHHHHCCCCCCCCCCHHHHHHHHCEEEEEEECCCCEEEEECHHHHHHHHHHHHHH ALADRAIAVQPLLIPVSMTADAVEIGVVEEERETLDALGFDLAVLSPTTIAIRAVPALLK HHHHCCEEECEEEEEEECCCCCEEEEEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHH DADLQALARAVLSDLHAYGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQME CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ATERADQCNHGRPTWYQLTLADLDRLFMRGQ HHHHHHHCCCCCCCEEEEEHHHHHHHHHCCC >Mature Secondary Structure SAIPESSETRADAPAAHAAASRDAGAADNALTPRPPRAIQPLPDQLISQIAAGEVVERP CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ASVVKELLENALDAGATALRILLDEGGVKRISITDDGCGIPEGELALALMRHATSKIRSL HHHHHHHHHHHHHCCHHEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH AELEAVATLGFRGEALASIASVSEMHITSRTETVSHATRIDAQTGALSPAAGTRGTTIEV HHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE RELYFNTPARRKFLKSEQTELGHCLEMIRRAALARPDVAISVLHNGRAVEHWNASDPATR HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHH VAKILGETFASAHLPLDESAGPLAVYGCAGLPTASRGRADQQYFFVNGRFVRDKLLTHAV HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH RAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVHPSKIEVRFRDSRSIHQFVFHAVQRALAR HHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHH HAGASPETTSGGHAARIEPMPSASPVSTFSTGTPASFGSAPLGAGFRVGDGGGSQPGNTW HCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHH MRQARMTQGTLPVAQPLALYDALFGRKDSGAGTSQGTTSLELRDAADAADGAVAPLPFGS HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC FATAQPFAAAQSFNPHDEQPLGFALGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKN CCCCCCHHHHCCCCCCCCCCHHHHHHHHCEEEEEEECCCCEEEEECHHHHHHHHHHHHHH ALADRAIAVQPLLIPVSMTADAVEIGVVEEERETLDALGFDLAVLSPTTIAIRAVPALLK HHHHCCEEECEEEEEEECCCCCEEEEEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHH DADLQALARAVLSDLHAYGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQME CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ATERADQCNHGRPTWYQLTLADLDRLFMRGQ HHHHHHHCCCCCCCEEEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]