| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is iolC1 [H]
Identifier: 186476358
GI number: 186476358
Start: 1816232
End: 1818244
Strand: Direct
Name: iolC1 [H]
Synonym: Bphy_1600
Alternate gene names: 186476358
Gene position: 1816232-1818244 (Clockwise)
Preceding gene: 186476357
Following gene: 186476359
Centisome position: 52.2
GC content: 65.13
Gene sequence:
>2013_bases ATGGCTCTTTCCAGCACACCCACGCCTCGCGGCGCGAGCCGCTTCGCAGCCGGCCGTAGCCGCGACATCGTCTGCCTCGG CCGGCTTGCCGTCGATCTTTACGCGCAGCAGGTCGGCTCGCGTCTCGAAGACGTGGCGAGCTTCGCGAAGTATCTGGGCG GCTCGTCCGCGAACATCGCGTTTGGCTGCGCGCGGCTCGGCCTGAATGCGTCGATGCTCGCGCGCGTCGGCGACGATCAC ATGGGCCGCTTTCTCACCGAAACACTCACGAAGGAAGGCTGCGACGTCAGCCGCGTGCGCGTCGATCACCAGCGTCTGAC GGCCCTCGTACTGCTCGGCCTCAAAGACCGCGACACCTTTCCGCTGATCTTCTATCGCGAGAACTGCGCGGACATGGCCG TCGACGAAAGCGACTTCGATGAGCAGTACATCGCTTCGTCGAAAGCGCTGCTGATTACAGGCACGCACTTCTCGACGGCG CAGGTGAACCGCACGAGCCGCCGCGCGCTGGAATACGCACGGCGCAACGACGTGCGCACCGTACTCGACATCGACTATCG GCCCGTGCTGTGGGGGCTCACGGGCAAGGCCGACGGCGAGACGCGCTTCGTCGCAAACGATGGCGTGAGCGCGCACATCC AGAGCATCCTGCCGCTGTTCGATCTCGTGATCGGCACGGAAGAAGAGTTTCGCATCGCGGGCGGCAAGAACTCGCTGATC GAATCGCTCGCGCAGGTGCGCCAGGTGACGCCCGCGACGCTCGTCGTCAAGCGCGGGCCGCTCGGCTGCCAGATCATCGA GGGCGACGTGCCCGCCTCAATCGGCGAGACGCCCGTTCATGGCGGCGTCGAAGTCGAGGTGCTGAACGTGCTCGGCGCGG GTGATGCATTCGCATCGGGCTTCCTGTCCGGCTGGCTGCGCGACGAGCCGCTCGAAGCGTGCGCGCGCACCGCGAACGCA AGCGGTGCGCTCGTCGTGTCGCGTCACGGCTGCGCACCCGCGATGCCGACGCCCGCCGAACTCGAATACTTCTTGCGCGA AGCCAAAGCGGACCCCGTGCGCATGCGCCGCCCCGACCGCGATGCGACGCTCGCACGCCTGCATCGCGTGACGCCCGCGC GGAAAACGTACGACGAAGTGCTCGGCTTCGCATTCGATCATCGCAATCAGTTCTTCGAGCTCGCGCAACAGACGGGCGCC GACCTCGCTCGCATTTCGACGCTGAAGAGCCTGTTCGTCGAAGCCGTCAAACAGACGGAACAGGCACTCGGCCTGCAAGG CAAAATTGCCGTGCTGATCGACGACCGCTACGGTCAGGATGCACTGAACGAAGCGACGGGCCGCGGCTGGTGGATCGGCC GCCCCGTTGAACTGCCGGGCTCGGTGCCGCTCGTGTTCGATCATGGCCGCTCGGTCGGCACGACGTTGACGAGCTGGCCG CGCGAGCACGTCGTGAAGTGCCTCGTGCAGTTCCATCCCGACGAGCCCATCGAACAGCGCATCGAGCAGGAAGCGCAGCT GCGCGCGCTCTACGATGCCGTGCAGGAATCCGGCCACGAACTGCTGCTCGAAGTGATTCCCCCGAAGCATCTGCCTGCTG GGCCCGACGTCGTATATCGCGCGTTGAAGCGGCTGTACAACATCGGCATCTATCCGGAATGGTGGAAGCTCGAACCGATG GATGCGTCGCAATGGCAGACCGTCGACGCACTGATCCAGGAGCGCGATCCCTATTGCCGTGGCGTCGTGCTGCTCGGCCT CTCTGCGCCTGTCGAGCAGATGATGGAAGGCTTTCGCGCAGCGGCGCATTCGAAGACCTGCAAAGGCTTCACGGTTGGCC GCACGATTTTTCATGAACCGAGCCACGCGTGGCTTGCAGGCGAGATCGGCGACGACGAAGTGATCGCACGCGTGCGCCGC ACGTTCGAAACACTGATCCACTCGTGGCGTGAGCATCGTGGCGCATCGCATGCGGCAGGCTCGCGTCACGTTAATCGGGA GCAGGCGGCATGA
Upstream 100 bases:
>100_bases GGCGGCGCGGAGATGCAGAAGATGATCAGCGAACTGGAAGGCGCGCAGATCTGAGCCGCAAGCCCTCTCCTTTCGCCGAC AGCACACTCAGGACACACAC
Downstream 100 bases:
>100_bases ACCAGCGCGCGTTGCATCATGATGTGACGACTCCATCCGACACGATCGCGCAGGTATGCGCCGATGGCACGATCCGTCTG ACGGCGGCGCAGGCCGTCGT
Product: ribokinase-like domain-containing protein
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase 1; DKG kinase 1 [H]
Number of amino acids: Translated: 670; Mature: 669
Protein sequence:
>670_residues MALSSTPTPRGASRFAAGRSRDIVCLGRLAVDLYAQQVGSRLEDVASFAKYLGGSSANIAFGCARLGLNASMLARVGDDH MGRFLTETLTKEGCDVSRVRVDHQRLTALVLLGLKDRDTFPLIFYRENCADMAVDESDFDEQYIASSKALLITGTHFSTA QVNRTSRRALEYARRNDVRTVLDIDYRPVLWGLTGKADGETRFVANDGVSAHIQSILPLFDLVIGTEEEFRIAGGKNSLI ESLAQVRQVTPATLVVKRGPLGCQIIEGDVPASIGETPVHGGVEVEVLNVLGAGDAFASGFLSGWLRDEPLEACARTANA SGALVVSRHGCAPAMPTPAELEYFLREAKADPVRMRRPDRDATLARLHRVTPARKTYDEVLGFAFDHRNQFFELAQQTGA DLARISTLKSLFVEAVKQTEQALGLQGKIAVLIDDRYGQDALNEATGRGWWIGRPVELPGSVPLVFDHGRSVGTTLTSWP REHVVKCLVQFHPDEPIEQRIEQEAQLRALYDAVQESGHELLLEVIPPKHLPAGPDVVYRALKRLYNIGIYPEWWKLEPM DASQWQTVDALIQERDPYCRGVVLLGLSAPVEQMMEGFRAAAHSKTCKGFTVGRTIFHEPSHAWLAGEIGDDEVIARVRR TFETLIHSWREHRGASHAAGSRHVNREQAA
Sequences:
>Translated_670_residues MALSSTPTPRGASRFAAGRSRDIVCLGRLAVDLYAQQVGSRLEDVASFAKYLGGSSANIAFGCARLGLNASMLARVGDDH MGRFLTETLTKEGCDVSRVRVDHQRLTALVLLGLKDRDTFPLIFYRENCADMAVDESDFDEQYIASSKALLITGTHFSTA QVNRTSRRALEYARRNDVRTVLDIDYRPVLWGLTGKADGETRFVANDGVSAHIQSILPLFDLVIGTEEEFRIAGGKNSLI ESLAQVRQVTPATLVVKRGPLGCQIIEGDVPASIGETPVHGGVEVEVLNVLGAGDAFASGFLSGWLRDEPLEACARTANA SGALVVSRHGCAPAMPTPAELEYFLREAKADPVRMRRPDRDATLARLHRVTPARKTYDEVLGFAFDHRNQFFELAQQTGA DLARISTLKSLFVEAVKQTEQALGLQGKIAVLIDDRYGQDALNEATGRGWWIGRPVELPGSVPLVFDHGRSVGTTLTSWP REHVVKCLVQFHPDEPIEQRIEQEAQLRALYDAVQESGHELLLEVIPPKHLPAGPDVVYRALKRLYNIGIYPEWWKLEPM DASQWQTVDALIQERDPYCRGVVLLGLSAPVEQMMEGFRAAAHSKTCKGFTVGRTIFHEPSHAWLAGEIGDDEVIARVRR TFETLIHSWREHRGASHAAGSRHVNREQAA >Mature_669_residues ALSSTPTPRGASRFAAGRSRDIVCLGRLAVDLYAQQVGSRLEDVASFAKYLGGSSANIAFGCARLGLNASMLARVGDDHM GRFLTETLTKEGCDVSRVRVDHQRLTALVLLGLKDRDTFPLIFYRENCADMAVDESDFDEQYIASSKALLITGTHFSTAQ VNRTSRRALEYARRNDVRTVLDIDYRPVLWGLTGKADGETRFVANDGVSAHIQSILPLFDLVIGTEEEFRIAGGKNSLIE SLAQVRQVTPATLVVKRGPLGCQIIEGDVPASIGETPVHGGVEVEVLNVLGAGDAFASGFLSGWLRDEPLEACARTANAS GALVVSRHGCAPAMPTPAELEYFLREAKADPVRMRRPDRDATLARLHRVTPARKTYDEVLGFAFDHRNQFFELAQQTGAD LARISTLKSLFVEAVKQTEQALGLQGKIAVLIDDRYGQDALNEATGRGWWIGRPVELPGSVPLVFDHGRSVGTTLTSWPR EHVVKCLVQFHPDEPIEQRIEQEAQLRALYDAVQESGHELLLEVIPPKHLPAGPDVVYRALKRLYNIGIYPEWWKLEPMD ASQWQTVDALIQERDPYCRGVVLLGLSAPVEQMMEGFRAAAHSKTCKGFTVGRTIFHEPSHAWLAGEIGDDEVIARVRRT FETLIHSWREHRGASHAAGSRHVNREQAA
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Caenorhabditis elegans, GI17532905, Length=324, Percent_Identity=25, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 73868; Mature: 73736
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALSSTPTPRGASRFAAGRSRDIVCLGRLAVDLYAQQVGSRLEDVASFAKYLGGSSANIA CCCCCCCCCCCHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH FGCARLGLNASMLARVGDDHMGRFLTETLTKEGCDVSRVRVDHQRLTALVLLGLKDRDTF HHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC PLIFYRENCADMAVDESDFDEQYIASSKALLITGTHFSTAQVNRTSRRALEYARRNDVRT EEEEEECCCHHHCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE VLDIDYRPVLWGLTGKADGETRFVANDGVSAHIQSILPLFDLVIGTEEEFRIAGGKNSLI EEECCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHH ESLAQVRQVTPATLVVKRGPLGCQIIEGDVPASIGETPVHGGVEVEVLNVLGAGDAFASG HHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHH FLSGWLRDEPLEACARTANASGALVVSRHGCAPAMPTPAELEYFLREAKADPVRMRRPDR HHHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC DATLARLHRVTPARKTYDEVLGFAFDHRNQFFELAQQTGADLARISTLKSLFVEAVKQTE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH QALGLQGKIAVLIDDRYGQDALNEATGRGWWIGRPVELPGSVPLVFDHGRSVGTTLTSWP HHCCCCCEEEEEEECCCCCHHHHHCCCCCEECCCCCCCCCCCCEEEECCCCCCCCHHCCC REHVVKCLVQFHPDEPIEQRIEQEAQLRALYDAVQESGHELLLEVIPPKHLPAGPDVVYR HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHCCCCCCCCCHHHHHH ALKRLYNIGIYPEWWKLEPMDASQWQTVDALIQERDPYCRGVVLLGLSAPVEQMMEGFRA HHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH AAHSKTCKGFTVGRTIFHEPSHAWLAGEIGDDEVIARVRRTFETLIHSWREHRGASHAAG HHCCCCCCCEEECHHHEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SRHVNREQAA CCCCCHHCCC >Mature Secondary Structure ALSSTPTPRGASRFAAGRSRDIVCLGRLAVDLYAQQVGSRLEDVASFAKYLGGSSANIA CCCCCCCCCCHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH FGCARLGLNASMLARVGDDHMGRFLTETLTKEGCDVSRVRVDHQRLTALVLLGLKDRDTF HHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCC PLIFYRENCADMAVDESDFDEQYIASSKALLITGTHFSTAQVNRTSRRALEYARRNDVRT EEEEEECCCHHHCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE VLDIDYRPVLWGLTGKADGETRFVANDGVSAHIQSILPLFDLVIGTEEEFRIAGGKNSLI EEECCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHH ESLAQVRQVTPATLVVKRGPLGCQIIEGDVPASIGETPVHGGVEVEVLNVLGAGDAFASG HHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHH FLSGWLRDEPLEACARTANASGALVVSRHGCAPAMPTPAELEYFLREAKADPVRMRRPDR HHHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC DATLARLHRVTPARKTYDEVLGFAFDHRNQFFELAQQTGADLARISTLKSLFVEAVKQTE HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH QALGLQGKIAVLIDDRYGQDALNEATGRGWWIGRPVELPGSVPLVFDHGRSVGTTLTSWP HHCCCCCEEEEEEECCCCCHHHHHCCCCCEECCCCCCCCCCCCEEEECCCCCCCCHHCCC REHVVKCLVQFHPDEPIEQRIEQEAQLRALYDAVQESGHELLLEVIPPKHLPAGPDVVYR HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHCCCCCCCCCHHHHHH ALKRLYNIGIYPEWWKLEPMDASQWQTVDALIQERDPYCRGVVLLGLSAPVEQMMEGFRA HHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHH AAHSKTCKGFTVGRTIFHEPSHAWLAGEIGDDEVIARVRRTFETLIHSWREHRGASHAAG HHCCCCCCCEEECHHHEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SRHVNREQAA CCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA