| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is ytfR [C]
Identifier: 186476357
GI number: 186476357
Start: 1815382
End: 1816185
Strand: Direct
Name: ytfR [C]
Synonym: Bphy_1599
Alternate gene names: 186476357
Gene position: 1815382-1816185 (Clockwise)
Preceding gene: 186476356
Following gene: 186476358
Centisome position: 52.18
GC content: 61.57
Gene sequence:
>804_bases ATGTCCGATACTCCGAACCAAGACGACACCATCCTCTCGCTCGAAAACGTCAGCAAGTACTTCGGCAAGGTGATCGCACT GTCCGGCGTCACGCTGCGACTCAAGCGCGGGGAAGTGCACTGCCTGCTGGGCGACAACGGCGCGGGCAAATCGACGCTCA TCAAGACGCTCGCGGGCGTGCATCAGCCCTCCTCCGGCGATTACCTCGTGGACGGCAAGAAGGTCAACTTCGAATCGCCG AGCGATGCGCTCGATATGGGCATCGCCACCGTGTATCAGGATCTCGCGCTGGTGCCGCTGCTGTCCGTCGCGCGTAATTT CTTCATGGGACGCGAGCCGCAGAAGAAGCTGTTCGGCCTCGTCAACGTGATGGACCTCGACACGAGCGCGCGCATCGCCC GCGACAAGCTCGCCGAGATGGGCATCATGGTGCGCGACCCGCATCAGCCGATCGGCACGATGTCGGGCGGCGAGCGACAG TGTCTCGCAATTGCGCGTGCGATCCACTTCGGCGCACGCGTGCTGATTCTCGACGAACCGACGGCAGCCCTCGGCGTGAA GCAGAGCTTTAACGTGCTGAAGCTGATACACAAGGCGCGCGCCAAAGGCATCTCAGTGATCTTCATCACGCACAACGTGC ACCACGCGTATCCGATCGGCGACTCGTTCACGCTGCTCAATCGCGGCAAGTCGATGGGCACCTACACGAAGGACACCATC ACGAAGGACGAAGTGCTCGACATGATGGCGGGCGGCGCGGAGATGCAGAAGATGATCAGCGAACTGGAAGGCGCGCAGAT CTGA
Upstream 100 bases:
>100_bases GGTTCCGCGTGTTCCTCGGCGTGATGCTGCTGATCGCCGTGCTCTTCAATCACTATGTGCGCCGCCGCGTCGCGCAATCG TAACGCCACGGGAGACGACC
Downstream 100 bases:
>100_bases GCCGCAAGCCCTCTCCTTTCGCCGACAGCACACTCAGGACACACACATGGCTCTTTCCAGCACACCCACGCCTCGCGGCG CGAGCCGCTTCGCAGCCGGC
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 267; Mature: 266
Protein sequence:
>267_residues MSDTPNQDDTILSLENVSKYFGKVIALSGVTLRLKRGEVHCLLGDNGAGKSTLIKTLAGVHQPSSGDYLVDGKKVNFESP SDALDMGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLVNVMDLDTSARIARDKLAEMGIMVRDPHQPIGTMSGGERQ CLAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHKARAKGISVIFITHNVHHAYPIGDSFTLLNRGKSMGTYTKDTI TKDEVLDMMAGGAEMQKMISELEGAQI
Sequences:
>Translated_267_residues MSDTPNQDDTILSLENVSKYFGKVIALSGVTLRLKRGEVHCLLGDNGAGKSTLIKTLAGVHQPSSGDYLVDGKKVNFESP SDALDMGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLVNVMDLDTSARIARDKLAEMGIMVRDPHQPIGTMSGGERQ CLAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHKARAKGISVIFITHNVHHAYPIGDSFTLLNRGKSMGTYTKDTI TKDEVLDMMAGGAEMQKMISELEGAQI >Mature_266_residues SDTPNQDDTILSLENVSKYFGKVIALSGVTLRLKRGEVHCLLGDNGAGKSTLIKTLAGVHQPSSGDYLVDGKKVNFESPS DALDMGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLVNVMDLDTSARIARDKLAEMGIMVRDPHQPIGTMSGGERQC LAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHKARAKGISVIFITHNVHHAYPIGDSFTLLNRGKSMGTYTKDTIT KDEVLDMMAGGAEMQKMISELEGAQI
Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=236, Percent_Identity=27.5423728813559, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI31657092, Length=228, Percent_Identity=27.1929824561404, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI27881501, Length=273, Percent_Identity=27.1062271062271, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI30795238, Length=273, Percent_Identity=27.1062271062271, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI45446740, Length=232, Percent_Identity=26.7241379310345, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI47078218, Length=232, Percent_Identity=26.7241379310345, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI150417984, Length=206, Percent_Identity=29.6116504854369, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI153792144, Length=233, Percent_Identity=25.3218884120172, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI62526033, Length=216, Percent_Identity=30.0925925925926, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI42741659, Length=198, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI73747915, Length=192, Percent_Identity=33.8541666666667, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI48995001, Length=248, Percent_Identity=38.7096774193548, Blast_Score=174, Evalue=7e-45, Organism=Escherichia coli, GI1788472, Length=257, Percent_Identity=34.2412451361868, Blast_Score=167, Evalue=8e-43, Organism=Escherichia coli, GI1788210, Length=247, Percent_Identity=31.9838056680162, Blast_Score=153, Evalue=9e-39, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=33.3333333333333, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=32.0987654320988, Blast_Score=144, Evalue=5e-36, Organism=Escherichia coli, GI1790525, Length=240, Percent_Identity=32.5, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI1788897, Length=237, Percent_Identity=32.4894514767932, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=31.2217194570136, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1787792, Length=260, Percent_Identity=30, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1786345, Length=255, Percent_Identity=30.9803921568627, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=34.5454545454545, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=29.0322580645161, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081791, Length=228, Percent_Identity=30.2631578947368, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=31.8385650224215, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=27.1929824561404, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=27.2321428571429, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=29.5964125560538, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787370, Length=233, Percent_Identity=28.3261802575107, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1786872, Length=238, Percent_Identity=30.2521008403361, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788225, Length=231, Percent_Identity=27.7056277056277, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=28.9915966386555, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87082267, Length=221, Percent_Identity=30.316742081448, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787758, Length=238, Percent_Identity=29.8319327731092, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789873, Length=209, Percent_Identity=32.5358851674641, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786398, Length=239, Percent_Identity=27.1966527196653, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1789864, Length=241, Percent_Identity=26.1410788381743, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=28.5123966942149, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787164, Length=222, Percent_Identity=30.6306306306306, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=31.0502283105023, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788761, Length=264, Percent_Identity=26.5151515151515, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790739, Length=229, Percent_Identity=25.764192139738, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=27.6497695852535, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=31.8627450980392, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=29.2576419213974, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787105, Length=215, Percent_Identity=28.3720930232558, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=30.5676855895196, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=26.7489711934156, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786703, Length=227, Percent_Identity=29.5154185022026, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081782, Length=240, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787500, Length=219, Percent_Identity=29.2237442922374, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787547, Length=245, Percent_Identity=27.7551020408163, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=27.4336283185841, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=28.6384976525822, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786563, Length=220, Percent_Identity=29.5454545454545, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=32.520325203252, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=28.2407407407407, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1789593, Length=236, Percent_Identity=25.4237288135593, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994943, Length=244, Percent_Identity=25.8196721311475, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI2367384, Length=186, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI145693107, Length=266, Percent_Identity=27.8195488721804, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788540, Length=94, Percent_Identity=40.4255319148936, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788506, Length=247, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=26.4423076923077, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786654, Length=245, Percent_Identity=27.7551020408163, Blast_Score=64, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17565586, Length=219, Percent_Identity=27.8538812785388, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71983523, Length=242, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983516, Length=242, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983510, Length=242, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115533608, Length=232, Percent_Identity=27.1551724137931, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534520, Length=240, Percent_Identity=27.5, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17541710, Length=193, Percent_Identity=30.0518134715026, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17511077, Length=250, Percent_Identity=31.2, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=27.9816513761468, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17558664, Length=229, Percent_Identity=28.82096069869, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17565938, Length=200, Percent_Identity=31, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324314, Length=192, Percent_Identity=30.7291666666667, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=213, Percent_Identity=26.7605633802817, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI221500365, Length=230, Percent_Identity=30.8695652173913, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI116007184, Length=230, Percent_Identity=30.8695652173913, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24666092, Length=235, Percent_Identity=26.8085106382979, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI221512771, Length=221, Percent_Identity=26.6968325791855, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24643674, Length=219, Percent_Identity=24.6575342465753, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571209, Length=210, Percent_Identity=25.7142857142857, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24582014, Length=213, Percent_Identity=29.1079812206573, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24582012, Length=213, Percent_Identity=29.1079812206573, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28573573, Length=205, Percent_Identity=26.3414634146341, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=26.3414634146341, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015862 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 28953; Mature: 28822
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTPNQDDTILSLENVSKYFGKVIALSGVTLRLKRGEVHCLLGDNGAGKSTLIKTLAGV CCCCCCCCCCEEEHHHHHHHHHHHHEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHHC HQPSSGDYLVDGKKVNFESPSDALDMGIATVYQDLALVPLLSVARNFFMGREPQKKLFGL CCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VNVMDLDTSARIARDKLAEMGIMVRDPHQPIGTMSGGERQCLAIARAIHFGARVLILDEP HHHEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECC TAALGVKQSFNVLKLIHKARAKGISVIFITHNVHHAYPIGDSFTLLNRGKSMGTYTKDTI CHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCEEECCCCCEEHHHCCCCCCCCCHHCC TKDEVLDMMAGGAEMQKMISELEGAQI CHHHHHHHHHCCHHHHHHHHHHCCCCC >Mature Secondary Structure SDTPNQDDTILSLENVSKYFGKVIALSGVTLRLKRGEVHCLLGDNGAGKSTLIKTLAGV CCCCCCCCCEEEHHHHHHHHHHHHEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHHC HQPSSGDYLVDGKKVNFESPSDALDMGIATVYQDLALVPLLSVARNFFMGREPQKKLFGL CCCCCCCEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VNVMDLDTSARIARDKLAEMGIMVRDPHQPIGTMSGGERQCLAIARAIHFGARVLILDEP HHHEECCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECC TAALGVKQSFNVLKLIHKARAKGISVIFITHNVHHAYPIGDSFTLLNRGKSMGTYTKDTI CHHHCCHHHHHHHHHHHHHHHCCEEEEEEEECCCEEECCCCCEEHHHCCCCCCCCCHHCC TKDEVLDMMAGGAEMQKMISELEGAQI CHHHHHHHHHCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA