Definition Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession NC_010622
Length 3,479,187

Click here to switch to the map view.

The map label for this gene is 186475853

Identifier: 186475853

GI number: 186475853

Start: 1227658

End: 1228515

Strand: Direct

Name: 186475853

Synonym: Bphy_1088

Alternate gene names: NA

Gene position: 1227658-1228515 (Clockwise)

Preceding gene: 186475849

Following gene: 186475854

Centisome position: 35.29

GC content: 59.44

Gene sequence:

>858_bases
ATGCAGGTATCGGCTCAGGAACTCGAGCCGCGCGCCTATTCACCCGCTCCCGTCGGCACCAACTTCGTTGGACTCACGTA
TTCGTGGCTGGGAGGACAGGTCCTCGTCGATTCGTCATTGCCCATCAGCGATGTCCATGCAAACATCAATTCTGCATCCG
CTGCATACGTGCACGTATTCAACCTTGCCGGCCGCGCCGCTTCGCTTGCCGTACTCGCGCCGTTCATTAGCGGCGACATC
TCCGGCAACGTCTTCGACGCACCGAATCGAGTGCATCGCGCCGGCCTGGGTGATCTCCGATTCAGGCTTTCGATCGATCT
GCTCGGTGGTCCTGCACTGACTCCAGAAGAATTCGCACGCCGCACACCGGACACGATCATCGGCACGAGCCTGATGGTCA
TTGCGCCGACGGGACAATATGAATCGGCGCATCTTGTGAACGTCGGCAGTAATCGATGGGCATTTAAACCGGAGGTCGGC
GTTTCGCAGCCGCTCGGCAACTGGTTCGCTGAAGCGACAGCGGGCGTCTGGTTTTTCACGGATAACACGTCGTTTCTCGG
CAGCAAGCGACGTAGTCAGGCGCCGCTCGGCGTGCTCCAGCTGCATGGCGGATACCTGTTCCGCCCGGGGTTGTGGTTGG
CCGCCGATGCGGGCTTCTATACGGGCGGGGCGACCTCCGTCAACGGGATCACCAACGACGACGCTCAAAACAATGCGCGC
TATGGACTGACGCTTTCGCTTCCGATAACGCGCGACTGGTCAGCCAAGCTCGCCGTGTCAAACGGCTTTATGGTCAGAGC
GGGAGGAAACTACAAGTCCATCTCCCTGACACTGCAATATCGGTGGTTCAACCGCTAA

Upstream 100 bases:

>100_bases
GGCGCAGTCACGCGCAGGTCCAGCTCGTGGGGTCTCGCGTTCATTGCGCACGCGCGACTGGTGCGCAGCGTCCGTCGCTT
CGTGCCTTCTTCTCACCGTC

Downstream 100 bases:

>100_bases
GCCATCTCCGACGAAGTCCCGCTATCCATCGTGGTGGGTCCCTTTCGCTGCCTGAATCGCGAAGCGCGGATCATCTGTTG
ACTAAGGTCAACCGAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MQVSAQELEPRAYSPAPVGTNFVGLTYSWLGGQVLVDSSLPISDVHANINSASAAYVHVFNLAGRAASLAVLAPFISGDI
SGNVFDAPNRVHRAGLGDLRFRLSIDLLGGPALTPEEFARRTPDTIIGTSLMVIAPTGQYESAHLVNVGSNRWAFKPEVG
VSQPLGNWFAEATAGVWFFTDNTSFLGSKRRSQAPLGVLQLHGGYLFRPGLWLAADAGFYTGGATSVNGITNDDAQNNAR
YGLTLSLPITRDWSAKLAVSNGFMVRAGGNYKSISLTLQYRWFNR

Sequences:

>Translated_285_residues
MQVSAQELEPRAYSPAPVGTNFVGLTYSWLGGQVLVDSSLPISDVHANINSASAAYVHVFNLAGRAASLAVLAPFISGDI
SGNVFDAPNRVHRAGLGDLRFRLSIDLLGGPALTPEEFARRTPDTIIGTSLMVIAPTGQYESAHLVNVGSNRWAFKPEVG
VSQPLGNWFAEATAGVWFFTDNTSFLGSKRRSQAPLGVLQLHGGYLFRPGLWLAADAGFYTGGATSVNGITNDDAQNNAR
YGLTLSLPITRDWSAKLAVSNGFMVRAGGNYKSISLTLQYRWFNR
>Mature_285_residues
MQVSAQELEPRAYSPAPVGTNFVGLTYSWLGGQVLVDSSLPISDVHANINSASAAYVHVFNLAGRAASLAVLAPFISGDI
SGNVFDAPNRVHRAGLGDLRFRLSIDLLGGPALTPEEFARRTPDTIIGTSLMVIAPTGQYESAHLVNVGSNRWAFKPEVG
VSQPLGNWFAEATAGVWFFTDNTSFLGSKRRSQAPLGVLQLHGGYLFRPGLWLAADAGFYTGGATSVNGITNDDAQNNAR
YGLTLSLPITRDWSAKLAVSNGFMVRAGGNYKSISLTLQYRWFNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30582; Mature: 30582

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVSAQELEPRAYSPAPVGTNFVGLTYSWLGGQVLVDSSLPISDVHANINSASAAYVHVF
CCCCHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCHHHHCCCCCCCCEEEEEEE
NLAGRAASLAVLAPFISGDISGNVFDAPNRVHRAGLGDLRFRLSIDLLGGPALTPEEFAR
ECCCCHHEEEEEEHHHCCCCCCCEECCCCHHHHCCCCCEEEEEEEEEECCCCCCHHHHHH
RTPDTIIGTSLMVIAPTGQYESAHLVNVGSNRWAFKPEVGVSQPLGNWFAEATAGVWFFT
CCCCCEECCEEEEEEECCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHCEEEEEE
DNTSFLGSKRRSQAPLGVLQLHGGYLFRPGLWLAADAGFYTGGATSVNGITNDDAQNNAR
CCCHHHCCCCCCCCCEEEEEECCCEEECCCEEEEECCCEECCCCCEECCCCCCCCCCCCE
YGLTLSLPITRDWSAKLAVSNGFMVRAGGNYKSISLTLQYRWFNR
EEEEEEEEECCCCCEEEEECCCEEEEECCCEEEEEEEEEEEEECC
>Mature Secondary Structure
MQVSAQELEPRAYSPAPVGTNFVGLTYSWLGGQVLVDSSLPISDVHANINSASAAYVHVF
CCCCHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCHHHHCCCCCCCCEEEEEEE
NLAGRAASLAVLAPFISGDISGNVFDAPNRVHRAGLGDLRFRLSIDLLGGPALTPEEFAR
ECCCCHHEEEEEEHHHCCCCCCCEECCCCHHHHCCCCCEEEEEEEEEECCCCCCHHHHHH
RTPDTIIGTSLMVIAPTGQYESAHLVNVGSNRWAFKPEVGVSQPLGNWFAEATAGVWFFT
CCCCCEECCEEEEEEECCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHCEEEEEE
DNTSFLGSKRRSQAPLGVLQLHGGYLFRPGLWLAADAGFYTGGATSVNGITNDDAQNNAR
CCCHHHCCCCCCCCCEEEEEECCCEEECCCEEEEECCCEECCCCCEECCCCCCCCCCCCE
YGLTLSLPITRDWSAKLAVSNGFMVRAGGNYKSISLTLQYRWFNR
EEEEEEEEECCCCCEEEEECCCEEEEECCCEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA