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The map label for this gene is 186475849

Identifier: 186475849

GI number: 186475849

Start: 1221727

End: 1223211

Strand: Direct

Name: 186475849

Synonym: Bphy_1084

Alternate gene names: NA

Gene position: 1221727-1223211 (Clockwise)

Preceding gene: 186475848

Following gene: 186475853

Centisome position: 35.12

GC content: 61.21

Gene sequence:

>1485_bases
ATGGCTGTGACAGAACGGATAACAATGACGATGCGGGAACTGGACAGATTCAAAGTCATTCAGGACGTGACGGAGGGACG
GCTCAAGCCATGGCGTGCTGCCGAACGTCTGGGTCTGACGACGAGGCAAGTACGGCGGTTGGTGGCCCGATACCGCGAGT
CTGGCGCCGCTGGACTGATCTCTTGCAAGCGCGGTATGCCCGGGAATCGGAGACTGGACGGCGAACTGGCCCAACGTGCT
CTGGCCATCGTCCGTGAGCGCTACGCCGATTTCGGCCCGACCCTGGCGTGCGAGAAGCTGCGCGAGTGTCACGGCATCCG
GCTCGCGAAGGAAACCGTACGCAAGCTGATGACGGAAGCCGGGCTGTGGATACCGCGCCGGCAGCGCCCGCCGAAGGTCT
ACCAGCCGCGGGCCCGGCGCGCGTGTCTGGGCGAGCTGGTGCAGATCGACGGCAGCGACCACCGCTGGTTCGAGGACCGG
GCGCCGGCCTGCACGCTGCTGGTGTATGTCGACGATGCGACGAGCCGGCTGATGGCGTTGCATTTCACGGCGACCGAATC
AACTTTCAGTTATTTCGAAGCTACGCGCGCATACATCGAGCGCCATGGCAAACCCGGCGCGCTCTATAGCGACAAGTACA
GCGTGTTTCGCAAAACGGGCGCGAACAAGGATGGCAATAGCGTGACCCACTTTGGACGTGCAATGTACGAACTGAACATC
GACACATTTTGCGCGAACAGCAGCCCGGCCAAGGGCCGCGTCGAGCGCGCACACCAGACGCTGCAGGACCGGCTCGTCAA
GGAACTGAGGCTGCGCGGCATCAACACGGTGGCCGAAGCCAATGCGTACGCCCCGATCTTCATGGCCGCTTATAACGCCC
GGTTCGCCAAGCCCCCGAAGAGCGATTTTGACGCACACCGGCCGCTGCGCGCTGATGAGAGCCTTGAGTTGGTGATGACG
TGGCGCGAGACGCGCAAGGTGACAAAGTCGTTGACCGTGCAATATGACCGCGTGATGTATCTGCTGGATGACACACCGGA
GAACCGGAAGCTGATCGATCGGTATGTCGAGGTCTGGGAGTACCCGGATGGGCGTATCGAGCTCAGGATGGACGGCCGAA
TTCTGGCGTGCAGACAGTATGACCGGCTGGCTGAGATCGATCAGGGTGCGATTGTCGAACACAAACGGCTCGCCCACGTG
TTGCAGGTCTCGCAGGCGCTTCAGGCGCAACGCGATAACAGCCGCATCGGAAAGGCACCTTCCCGCACGCATCTGGGCGC
TTCAACCAAAGTCCAAAGTCGGATGTCAGGCAAGAAGAAGCAACGCGAGTTCACACAGGCCGACGTCGAACATGCGATCG
TGGATCTTGCCCAGCAAAGACAGATGCAACCGCAACATCACAAACCTGGCCGGAGGTCTGCAAGGGACAGGGGAACGGAC
GTAAGCGCGCTGCCCATTCAAACACCATCCTTCGACACTGCGTGA

Upstream 100 bases:

>100_bases
GCGGCCAGATGATAATGTCCGCTTTTAGCCGCATAGAAATGTCCGCTTTTGATGCTGTCGTATGCTAGCCACCCGCCGTT
TTCGGGCGCTCTAGACATCG

Downstream 100 bases:

>100_bases
TCTTTAACCCATGAAAAGCAAACCCTGAACCCCTTAAACCCGGACATCTCTATCTAGCCGGGAAGCGGACATCTGAATCT
GGCCTCGACATGACTGTAGG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MAVTERITMTMRELDRFKVIQDVTEGRLKPWRAAERLGLTTRQVRRLVARYRESGAAGLISCKRGMPGNRRLDGELAQRA
LAIVRERYADFGPTLACEKLRECHGIRLAKETVRKLMTEAGLWIPRRQRPPKVYQPRARRACLGELVQIDGSDHRWFEDR
APACTLLVYVDDATSRLMALHFTATESTFSYFEATRAYIERHGKPGALYSDKYSVFRKTGANKDGNSVTHFGRAMYELNI
DTFCANSSPAKGRVERAHQTLQDRLVKELRLRGINTVAEANAYAPIFMAAYNARFAKPPKSDFDAHRPLRADESLELVMT
WRETRKVTKSLTVQYDRVMYLLDDTPENRKLIDRYVEVWEYPDGRIELRMDGRILACRQYDRLAEIDQGAIVEHKRLAHV
LQVSQALQAQRDNSRIGKAPSRTHLGASTKVQSRMSGKKKQREFTQADVEHAIVDLAQQRQMQPQHHKPGRRSARDRGTD
VSALPIQTPSFDTA

Sequences:

>Translated_494_residues
MAVTERITMTMRELDRFKVIQDVTEGRLKPWRAAERLGLTTRQVRRLVARYRESGAAGLISCKRGMPGNRRLDGELAQRA
LAIVRERYADFGPTLACEKLRECHGIRLAKETVRKLMTEAGLWIPRRQRPPKVYQPRARRACLGELVQIDGSDHRWFEDR
APACTLLVYVDDATSRLMALHFTATESTFSYFEATRAYIERHGKPGALYSDKYSVFRKTGANKDGNSVTHFGRAMYELNI
DTFCANSSPAKGRVERAHQTLQDRLVKELRLRGINTVAEANAYAPIFMAAYNARFAKPPKSDFDAHRPLRADESLELVMT
WRETRKVTKSLTVQYDRVMYLLDDTPENRKLIDRYVEVWEYPDGRIELRMDGRILACRQYDRLAEIDQGAIVEHKRLAHV
LQVSQALQAQRDNSRIGKAPSRTHLGASTKVQSRMSGKKKQREFTQADVEHAIVDLAQQRQMQPQHHKPGRRSARDRGTD
VSALPIQTPSFDTA
>Mature_493_residues
AVTERITMTMRELDRFKVIQDVTEGRLKPWRAAERLGLTTRQVRRLVARYRESGAAGLISCKRGMPGNRRLDGELAQRAL
AIVRERYADFGPTLACEKLRECHGIRLAKETVRKLMTEAGLWIPRRQRPPKVYQPRARRACLGELVQIDGSDHRWFEDRA
PACTLLVYVDDATSRLMALHFTATESTFSYFEATRAYIERHGKPGALYSDKYSVFRKTGANKDGNSVTHFGRAMYELNID
TFCANSSPAKGRVERAHQTLQDRLVKELRLRGINTVAEANAYAPIFMAAYNARFAKPPKSDFDAHRPLRADESLELVMTW
RETRKVTKSLTVQYDRVMYLLDDTPENRKLIDRYVEVWEYPDGRIELRMDGRILACRQYDRLAEIDQGAIVEHKRLAHVL
QVSQALQAQRDNSRIGKAPSRTHLGASTKVQSRMSGKKKQREFTQADVEHAIVDLAQQRQMQPQHHKPGRRSARDRGTDV
SALPIQTPSFDTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 56581; Mature: 56450

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVTERITMTMRELDRFKVIQDVTEGRLKPWRAAERLGLTTRQVRRLVARYRESGAAGLI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
SCKRGMPGNRRLDGELAQRALAIVRERYADFGPTLACEKLRECHGIRLAKETVRKLMTEA
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC
GLWIPRRQRPPKVYQPRARRACLGELVQIDGSDHRWFEDRAPACTLLVYVDDATSRLMAL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEECCCCCCEEEE
HFTATESTFSYFEATRAYIERHGKPGALYSDKYSVFRKTGANKDGNSVTHFGRAMYELNI
EEECCHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHHHHEEECC
DTFCANSSPAKGRVERAHQTLQDRLVKELRLRGINTVAEANAYAPIFMAAYNARFAKPPK
HHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCCCCCCCC
SDFDAHRPLRADESLELVMTWRETRKVTKSLTVQYDRVMYLLDDTPENRKLIDRYVEVWE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHEEEEECCCCCHHHHHHHHHHHHC
YPDGRIELRMDGRILACRQYDRLAEIDQGAIVEHKRLAHVLQVSQALQAQRDNSRIGKAP
CCCCEEEEEECCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SRTHLGASTKVQSRMSGKKKQREFTQADVEHAIVDLAQQRQMQPQHHKPGRRSARDRGTD
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC
VSALPIQTPSFDTA
CEEECCCCCCCCCC
>Mature Secondary Structure 
AVTERITMTMRELDRFKVIQDVTEGRLKPWRAAERLGLTTRQVRRLVARYRESGAAGLI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
SCKRGMPGNRRLDGELAQRALAIVRERYADFGPTLACEKLRECHGIRLAKETVRKLMTEA
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC
GLWIPRRQRPPKVYQPRARRACLGELVQIDGSDHRWFEDRAPACTLLVYVDDATSRLMAL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCEEEEEEEECCCCCCEEEE
HFTATESTFSYFEATRAYIERHGKPGALYSDKYSVFRKTGANKDGNSVTHFGRAMYELNI
EEECCHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHHHHEEECC
DTFCANSSPAKGRVERAHQTLQDRLVKELRLRGINTVAEANAYAPIFMAAYNARFAKPPK
HHEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCCCCCCCC
SDFDAHRPLRADESLELVMTWRETRKVTKSLTVQYDRVMYLLDDTPENRKLIDRYVEVWE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHEEEEECCCCCHHHHHHHHHHHHC
YPDGRIELRMDGRILACRQYDRLAEIDQGAIVEHKRLAHVLQVSQALQAQRDNSRIGKAP
CCCCEEEEEECCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SRTHLGASTKVQSRMSGKKKQREFTQADVEHAIVDLAQQRQMQPQHHKPGRRSARDRGTD
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCC
VSALPIQTPSFDTA
CEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]