| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475805
Identifier: 186475805
GI number: 186475805
Start: 1169504
End: 1170325
Strand: Reverse
Name: 186475805
Synonym: Bphy_1040
Alternate gene names: NA
Gene position: 1170325-1169504 (Counterclockwise)
Preceding gene: 186475806
Following gene: 186475800
Centisome position: 33.64
GC content: 67.15
Gene sequence:
>822_bases ATGTGTCTGATCGTGTTCGACTGGCGTCCTGACGCGTCCGATAGTCCGCTGTTCACGCTCACCGCGAATCGCGACGAATT CCTGAAGCGCACAGCCCAGCCGATGCATTGGTGGGACGACGCTCCCGGCCTGCTGGCGGGCCGCGACCTGGTCGGCGGCG GGACCTGGCTGGGCATGACACGCGACGGCCGGTTCGCTGCCCTCACTAACTATCGCGCGCCGAGCGAAATGCGCGCCGAT GCGCCGACGCGTGGCACGCTGGTCAGCAACTGGCTGTCCGGCGAGCGCGGCATCGAAAGCGGCGCGCCGCTCGATTATCT GCTGCGCGTCGCGCAAGACGGTGACATGTACAACGGCTTCAATCTGCTGGTCGGCGACTGGACGCGGCGCGAACTGGCCT GGTATTGCAACCGCTCGCCTGCCGCGCCGGCGCTGCTCGCGCCGGGCACGCACGGCATCTCCAATGCAGTACTCGATACG CCTTGGCCGAAGCTGGTGCGCAAGCGCGCCGAACTCGCACGGACGCTCGCCGACGACAGCCGTCCGCCGCTCACGACGCT GATCGGCCTGATGCGCGATCCGCGTGTTGCACGCGACGACGAACTGCCCGCCACGGGAATATCGCTCGAACGCGAACGCG CGCTGTCGGCCGCCTTCATCGATACGCCCGAATACGGCACACGCGGCACGACGGCAATGCAGGTCGTCGCGCAACACAAA CGCCTGAGCGTGTCGGCACTCGAGCGCAGCGACGACAACGGCTCGCATCGCGTCAAACGCCCCGGCGATTACGAGCGCAG CTTCACCTTCGACATCGCCTGA
Upstream 100 bases:
>100_bases AGCCTCCCTTCGTTCACGTCGCCTTCGACGTCGCGCCTCCGACGCAGGCGCGACGCGTGGTTCCCGTATCCAGGCTGTCC CGCTAAAGAGACTTTCGCTG
Downstream 100 bases:
>100_bases CCGCGAGCCGGCTCATTCGCGGCTCACTCGATACCGAACGCCTCACGCAACGCCGCTGCCGCATCGGCATGCGCGCGCGC CACGTCGGGCACGTAGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MCLIVFDWRPDASDSPLFTLTANRDEFLKRTAQPMHWWDDAPGLLAGRDLVGGGTWLGMTRDGRFAALTNYRAPSEMRAD APTRGTLVSNWLSGERGIESGAPLDYLLRVAQDGDMYNGFNLLVGDWTRRELAWYCNRSPAAPALLAPGTHGISNAVLDT PWPKLVRKRAELARTLADDSRPPLTTLIGLMRDPRVARDDELPATGISLERERALSAAFIDTPEYGTRGTTAMQVVAQHK RLSVSALERSDDNGSHRVKRPGDYERSFTFDIA
Sequences:
>Translated_273_residues MCLIVFDWRPDASDSPLFTLTANRDEFLKRTAQPMHWWDDAPGLLAGRDLVGGGTWLGMTRDGRFAALTNYRAPSEMRAD APTRGTLVSNWLSGERGIESGAPLDYLLRVAQDGDMYNGFNLLVGDWTRRELAWYCNRSPAAPALLAPGTHGISNAVLDT PWPKLVRKRAELARTLADDSRPPLTTLIGLMRDPRVARDDELPATGISLERERALSAAFIDTPEYGTRGTTAMQVVAQHK RLSVSALERSDDNGSHRVKRPGDYERSFTFDIA >Mature_273_residues MCLIVFDWRPDASDSPLFTLTANRDEFLKRTAQPMHWWDDAPGLLAGRDLVGGGTWLGMTRDGRFAALTNYRAPSEMRAD APTRGTLVSNWLSGERGIESGAPLDYLLRVAQDGDMYNGFNLLVGDWTRRELAWYCNRSPAAPALLAPGTHGISNAVLDT PWPKLVRKRAELARTLADDSRPPLTTLIGLMRDPRVARDDELPATGISLERERALSAAFIDTPEYGTRGTTAMQVVAQHK RLSVSALERSDDNGSHRVKRPGDYERSFTFDIA
Specific function: Unknown
COG id: COG3332
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190570176, Length=273, Percent_Identity=33.6996336996337, Blast_Score=130, Evalue=1e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30285; Mature: 30285
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCLIVFDWRPDASDSPLFTLTANRDEFLKRTAQPMHWWDDAPGLLAGRDLVGGGTWLGMT CEEEEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCEECCEECCCCEEEEEC RDGRFAALTNYRAPSEMRADAPTRGTLVSNWLSGERGIESGAPLDYLLRVAQDGDMYNGF CCCCEEEEECCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCE NLLVGDWTRRELAWYCNRSPAAPALLAPGTHGISNAVLDTPWPKLVRKRAELARTLADDS EEEECCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC RPPLTTLIGLMRDPRVARDDELPATGISLERERALSAAFIDTPEYGTRGTTAMQVVAQHK CCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHH RLSVSALERSDDNGSHRVKRPGDYERSFTFDIA HCCHHHHHCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MCLIVFDWRPDASDSPLFTLTANRDEFLKRTAQPMHWWDDAPGLLAGRDLVGGGTWLGMT CEEEEEECCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCEECCEECCCCEEEEEC RDGRFAALTNYRAPSEMRADAPTRGTLVSNWLSGERGIESGAPLDYLLRVAQDGDMYNGF CCCCEEEEECCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCE NLLVGDWTRRELAWYCNRSPAAPALLAPGTHGISNAVLDTPWPKLVRKRAELARTLADDS EEEECCCHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC RPPLTTLIGLMRDPRVARDDELPATGISLERERALSAAFIDTPEYGTRGTTAMQVVAQHK CCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHH RLSVSALERSDDNGSHRVKRPGDYERSFTFDIA HCCHHHHHCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA