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The map label for this gene is arnA [H]

Identifier: 186475689

GI number: 186475689

Start: 1026153

End: 1027088

Strand: Reverse

Name: arnA [H]

Synonym: Bphy_0924

Alternate gene names: 186475689

Gene position: 1027088-1026153 (Counterclockwise)

Preceding gene: 186475690

Following gene: 186475688

Centisome position: 29.52

GC content: 66.88

Gene sequence:

>936_bases
ATGAAGCCGCGCGCCGTCGTCTTCGCGTATCACAACGTCGGTGTGCGCTGCCTGCAGGTACTGCTCGCGCGCGGCGTCGA
GGTCGCGCTCGTCGTCACGCACGAAGACAGCCCTTCGGAAAACATCTGGTTCGGCAGCGTGGCGTCGGTGGCGGCGGATC
ACGGCATTCCCGTCGTGACGCCCGCCGATCCGAAGAGCCCCGAACTGCGCGCGCGCGTGGTCGATGCGCGCCCCGACTTC
ATTTTCTCGTTCTATTACCGGCACATGCTGCCCGTTGATCTGCTGGCTGTCGCACCGCGCGGCGCGTACAACATGCACGG
ATCGCTGCTGCCGAAATACCGCGGCCGCGTGCCCACCAACTGGGCCGTGCTCAACGGCGAGACAGAAACGGGCGCGACGC
TGCATGAGATGGCCGCGAAGCCGGACGCAGGCGCAATCATTGCGCAGACGCCCGTGCCGATCCTGCCCGACGACACGGCC
GCCCAGGTATTCGACAAGGTGACCGTCGCCGCCGAGCAGACGCTGTGGCGCGCACTGCCGGCACTGCTCGCGGGCGAAGC
GCCGCATCTGCCGAACGACCTCGCGCACGGCAGCTACTTCGGCGGACGCAAGCCGGAAGACGGCCGCATCGACTTCAGCC
AGAGCGGTCAGCAGGTCTACAACCTGATTCGCGCCGTCGCACCGCCGTATCCCGGCGCGTTCACGGATATCGGCGGCGAG
CGCTTCGTCGTAGCGCGTGCGCGTCTTGCGCAGCCCGGTGCGCCCGGTGCGGATTTGCCGCCCGGCATCCACGTAGGCGA
TAATGGCTTTTTTGCGACATGCGGCGACGGCCGCGTGATCGCCATCCACGAATTGCGGCATCAGCGCGACGGCAACGAGC
GCGTCGTCACCCCCGCCGAATTCACCCAGTTCACTCAATCTTCCCGTAACGCATGA

Upstream 100 bases:

>100_bases
AACAGCGCGACGGCGAACCCGTTGTCGCGCAACCGCGCCAGTCGATCTTGCCGGGCATGCAGCCCGCACCCGTCGCACAC
GACGAACCGAGGCAAGGCGC

Downstream 100 bases:

>100_bases
AAAAAGTCCTGATTCTGGGTGTGAACGGCTTTATCGGCCATCACCTGTCCAAGCGCATTCTCGAAACGACCGACTGGGAA
GTGTTCGGGATGGACATGCA

Product: putative formyltransferase

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKPRAVVFAYHNVGVRCLQVLLARGVEVALVVTHEDSPSENIWFGSVASVAADHGIPVVTPADPKSPELRARVVDARPDF
IFSFYYRHMLPVDLLAVAPRGAYNMHGSLLPKYRGRVPTNWAVLNGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTA
AQVFDKVTVAAEQTLWRALPALLAGEAPHLPNDLAHGSYFGGRKPEDGRIDFSQSGQQVYNLIRAVAPPYPGAFTDIGGE
RFVVARARLAQPGAPGADLPPGIHVGDNGFFATCGDGRVIAIHELRHQRDGNERVVTPAEFTQFTQSSRNA

Sequences:

>Translated_311_residues
MKPRAVVFAYHNVGVRCLQVLLARGVEVALVVTHEDSPSENIWFGSVASVAADHGIPVVTPADPKSPELRARVVDARPDF
IFSFYYRHMLPVDLLAVAPRGAYNMHGSLLPKYRGRVPTNWAVLNGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTA
AQVFDKVTVAAEQTLWRALPALLAGEAPHLPNDLAHGSYFGGRKPEDGRIDFSQSGQQVYNLIRAVAPPYPGAFTDIGGE
RFVVARARLAQPGAPGADLPPGIHVGDNGFFATCGDGRVIAIHELRHQRDGNERVVTPAEFTQFTQSSRNA
>Mature_311_residues
MKPRAVVFAYHNVGVRCLQVLLARGVEVALVVTHEDSPSENIWFGSVASVAADHGIPVVTPADPKSPELRARVVDARPDF
IFSFYYRHMLPVDLLAVAPRGAYNMHGSLLPKYRGRVPTNWAVLNGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTA
AQVFDKVTVAAEQTLWRALPALLAGEAPHLPNDLAHGSYFGGRKPEDGRIDFSQSGQQVYNLIRAVAPPYPGAFTDIGGE
RFVVARARLAQPGAPGADLPPGIHVGDNGFFATCGDGRVIAIHELRHQRDGNERVVTPAEFTQFTQSSRNA

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI21614513, Length=232, Percent_Identity=24.1379310344828, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI238814322, Length=213, Percent_Identity=25.8215962441315, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1788589, Length=274, Percent_Identity=43.7956204379562, Blast_Score=239, Evalue=1e-64,
Organism=Escherichia coli, GI1789683, Length=279, Percent_Identity=29.7491039426523, Blast_Score=108, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI133930964, Length=296, Percent_Identity=24.3243243243243, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 33489; Mature: 33489

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPRAVVFAYHNVGVRCLQVLLARGVEVALVVTHEDSPSENIWFGSVASVAADHGIPVVT
CCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEECHHHHHHHHCCCEEEE
PADPKSPELRARVVDARPDFIFSFYYRHMLPVDLLAVAPRGAYNMHGSLLPKYRGRVPTN
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHEEECCCCCCCCCCCCCHHHCCCCCCC
WAVLNGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTAAQVFDKVTVAAEQTLWRALP
EEEEECCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALLAGEAPHLPNDLAHGSYFGGRKPEDGRIDFSQSGQQVYNLIRAVAPPYPGAFTDIGGE
HHHCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCHHCCCCC
RFVVARARLAQPGAPGADLPPGIHVGDNGFFATCGDGRVIAIHELRHQRDGNERVVTPAE
EEEEEEHHHCCCCCCCCCCCCCEEECCCCEEEEECCCCEEEEEHHHHHCCCCCEEECHHH
FTQFTQSSRNA
HHHHHHHCCCC
>Mature Secondary Structure
MKPRAVVFAYHNVGVRCLQVLLARGVEVALVVTHEDSPSENIWFGSVASVAADHGIPVVT
CCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEECHHHHHHHHCCCEEEE
PADPKSPELRARVVDARPDFIFSFYYRHMLPVDLLAVAPRGAYNMHGSLLPKYRGRVPTN
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHEEECCCCCCCCCCCCCHHHCCCCCCC
WAVLNGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTAAQVFDKVTVAAEQTLWRALP
EEEEECCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ALLAGEAPHLPNDLAHGSYFGGRKPEDGRIDFSQSGQQVYNLIRAVAPPYPGAFTDIGGE
HHHCCCCCCCCCHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCHHCCCCC
RFVVARARLAQPGAPGADLPPGIHVGDNGFFATCGDGRVIAIHELRHQRDGNERVVTPAE
EEEEEEHHHCCCCCCCCCCCCCEEECCCCEEEEECCCCEEEEEHHHHHCCCCCEEECHHH
FTQFTQSSRNA
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA