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The map label for this gene is arnD [H]

Identifier: 186475687

GI number: 186475687

Start: 1024201

End: 1025097

Strand: Reverse

Name: arnD [H]

Synonym: Bphy_0922

Alternate gene names: 186475687

Gene position: 1025097-1024201 (Counterclockwise)

Preceding gene: 186475688

Following gene: 186475686

Centisome position: 29.46

GC content: 65.22

Gene sequence:

>897_bases
TTGGCCTTGATCGTCCTGAAGATCGATGTCGATACGTTGCGTGGCACGCGTGAAGGCGTGCCCAATCTCGCGCGTATCTT
CGACCGCTACAAGGCGCGCGCCACCTTCCTCTTCAGCCTCGGCCCCGACCACACCGGCTGGGCGATGCGGCGCGTGCTGC
GGCCGGGCTTCCTGAAGAAGGTGTCGCGCACTTCGGTGGTCGAGCATTACGGCATCAGGCAACTGATGTACGGCGTGCTG
CTGCCGGGACCGGACATCGGCGCGCGCGCCCGCTCGGAGATGCGCGCGATCCACGAAGCCGGCTTCGAATGCGGCATTCA
TACGTGGGATCACGTCTACTGGCAGGACAACGTGCGTTCGCGTCCGCGCGACTGGACCGTCGCGCAGATGCAGAAGAGCC
ACGACCGTTTCGCCGACATCTTCGGCATGCCGCCCGTCACGCATGGCGCGGCTGGCTGGCAGATGAACGGCCACGCGTTC
GAGCAGATCGATGCGTGGGGCATGCAGTACGCATCCGACGGGCGTGGGCATACGCCTTACTTCCCGGTCGTCGGAGGGCG
CACGCTGGCGCATGTGCAGATGCCGACCACCCTGCCCACGCTCGACGAAGTGCTGGGCGTCGACGGCATCGACACGGATA
ACGTCGCCGCGTGGATGTTGAAGCGCACCGAAAATAATCCGCATGACCAGGTGTTCACGCTGCATGCGGAACTGGAAGGC
CAGAAACTCGCGCCCGTGTTCGAGCAGCTGCTGGCCGGGTGGCGTGCGCAAGGCCACATGTTCGCGACCATGGGCGATTA
CCACGCCAGGCTGGACCGCGACACACTGCCGTCGTACCCTGTCACATGGGGCGAAATCCCGGGCCGCTCCGGCGAACTGA
TCGTCCAGCCCGACTAG

Upstream 100 bases:

>100_bases
GTCGACGTTCGACGAAGCCCTGCGCAAGATCTTCGAAGCGTACCGCGGCCATGTCGCCGAAGCCCGCGCGCTCGTCGAAC
AACAATAAGGGCTGCCGCTC

Downstream 100 bases:

>100_bases
CTGTGCAGAGGGCCGCGCGTCATCCCGTCGTCCGCGATGCGCTCGCCCGATGCATGCCATCCTGTTCGCCGGGCGCGCCG
TGCGCCAGCAAGCGGGCTGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MALIVLKIDVDTLRGTREGVPNLARIFDRYKARATFLFSLGPDHTGWAMRRVLRPGFLKKVSRTSVVEHYGIRQLMYGVL
LPGPDIGARARSEMRAIHEAGFECGIHTWDHVYWQDNVRSRPRDWTVAQMQKSHDRFADIFGMPPVTHGAAGWQMNGHAF
EQIDAWGMQYASDGRGHTPYFPVVGGRTLAHVQMPTTLPTLDEVLGVDGIDTDNVAAWMLKRTENNPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHMFATMGDYHARLDRDTLPSYPVTWGEIPGRSGELIVQPD

Sequences:

>Translated_298_residues
MALIVLKIDVDTLRGTREGVPNLARIFDRYKARATFLFSLGPDHTGWAMRRVLRPGFLKKVSRTSVVEHYGIRQLMYGVL
LPGPDIGARARSEMRAIHEAGFECGIHTWDHVYWQDNVRSRPRDWTVAQMQKSHDRFADIFGMPPVTHGAAGWQMNGHAF
EQIDAWGMQYASDGRGHTPYFPVVGGRTLAHVQMPTTLPTLDEVLGVDGIDTDNVAAWMLKRTENNPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHMFATMGDYHARLDRDTLPSYPVTWGEIPGRSGELIVQPD
>Mature_297_residues
ALIVLKIDVDTLRGTREGVPNLARIFDRYKARATFLFSLGPDHTGWAMRRVLRPGFLKKVSRTSVVEHYGIRQLMYGVLL
PGPDIGARARSEMRAIHEAGFECGIHTWDHVYWQDNVRSRPRDWTVAQMQKSHDRFADIFGMPPVTHGAAGWQMNGHAFE
QIDAWGMQYASDGRGHTPYFPVVGGRTLAHVQMPTTLPTLDEVLGVDGIDTDNVAAWMLKRTENNPHDQVFTLHAELEGQ
KLAPVFEQLLAGWRAQGHMFATMGDYHARLDRDTLPSYPVTWGEIPGRSGELIVQPD

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=34.8993288590604, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33594; Mature: 33462

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIVLKIDVDTLRGTREGVPNLARIFDRYKARATFLFSLGPDHTGWAMRRVLRPGFLKK
CEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHH
VSRTSVVEHYGIRQLMYGVLLPGPDIGARARSEMRAIHEAGFECGIHTWDHVYWQDNVRS
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCC
RPRDWTVAQMQKSHDRFADIFGMPPVTHGAAGWQMNGHAFEQIDAWGMQYASDGRGHTPY
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCC
FPVVGGRTLAHVQMPTTLPTLDEVLGVDGIDTDNVAAWMLKRTENNPHDQVFTLHAELEG
EEECCCCEEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
QKLAPVFEQLLAGWRAQGHMFATMGDYHARLDRDTLPSYPVTWGEIPGRSGELIVQPD
CCHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
ALIVLKIDVDTLRGTREGVPNLARIFDRYKARATFLFSLGPDHTGWAMRRVLRPGFLKK
EEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCHHHHH
VSRTSVVEHYGIRQLMYGVLLPGPDIGARARSEMRAIHEAGFECGIHTWDHVYWQDNVRS
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEECCCCCC
RPRDWTVAQMQKSHDRFADIFGMPPVTHGAAGWQMNGHAFEQIDAWGMQYASDGRGHTPY
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCCCC
FPVVGGRTLAHVQMPTTLPTLDEVLGVDGIDTDNVAAWMLKRTENNPHDQVFTLHAELEG
EEECCCCEEEEEECCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
QKLAPVFEQLLAGWRAQGHMFATMGDYHARLDRDTLPSYPVTWGEIPGRSGELIVQPD
CCHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA