| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475600
Identifier: 186475600
GI number: 186475600
Start: 933548
End: 934201
Strand: Direct
Name: 186475600
Synonym: Bphy_0835
Alternate gene names: NA
Gene position: 933548-934201 (Clockwise)
Preceding gene: 186475599
Following gene: 186475601
Centisome position: 26.83
GC content: 64.83
Gene sequence:
>654_bases ATGGGGAGCATCATGGGGTCGGTTTCGGTGCCAATGCAAACAAACGCGCAAGCAAGCTCGCATGCCGAGCTTCTGTCTGC TTTCGTCGACGGTGAACTGTTCGACGGCGAGCATCCGAACACAATTCTGGCCGCGCTGGATCAAAAAGATCGCGCGGCAT GGTCGTGCTATCACCTGATCGGCGACGCGCTGCGTTCCGACGATCTGGCTGTCAGCCCGGCTACCAGCAGTGCCTTTCTG GCGGGGTTTTCGGCCCGCTTCGAAAACGAGGCGCATGTGCTCGCACCGGCTGCCATGCCGGCCGCACGCCGTCTGCTCGC CTTGCGCCGCCGAGTGATTCCCGCATTCGCCGTGGCGGCTGCGGCCGCGACGCTGACGTGGATCGTGATGCCGCAGCTGT CGGGCATCGACACGGGTGCGGGCGTGACGCAGGTCGCGTCGGTCGCGCCGCACGGGGACTCGGTGCAGCGCGTGGCAATG GCTTCGATGCCTGCCGCGACCACGGCCCAGGCGGAAGTATCAGACGGCAACATCATCCGCGACGCAAGCCTCGACCAATA TCTGGAAGCGCATCAACAGTTCGGCCTGCAGCCTGTCGTATCGGGTTCGATGCCGTTGCTCCGCGCGGCTTCTCTGACCA CGCAGGGCCACTAG
Upstream 100 bases:
>100_bases AGGCAAGCGCTGGTAGCGGCTGTTGGACAGCGGCCAGCCGGCCTCGCGGACAGCGGCGCAGTATCTGGGTCAAGTGGTGT CACTACGGGATGTCTGAAAG
Downstream 100 bases:
>100_bases TCTGATGCAGAGTCTGCGGTTGAAAAAAACGACCATCTGGGGGCGGCTGCCGGCAATCCTGTTCTGCGCAGCCGTGCTCT TGTCCGCTACGTCGCGCACC
Product: anti sigma-E protein, RseA
Products: NA
Alternate protein names: Anti Sigma-E Protein; Sigma Factor Negative Regulatory Protein RseA Family; Sigma Factor AlgU Regulatory Protein MucA; Anti Sigma-E Protein RseA Family Protein; Transmembrane SigmaE Factor Negative Regulator Protein
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MGSIMGSVSVPMQTNAQASSHAELLSAFVDGELFDGEHPNTILAALDQKDRAAWSCYHLIGDALRSDDLAVSPATSSAFL AGFSARFENEAHVLAPAAMPAARRLLALRRRVIPAFAVAAAAATLTWIVMPQLSGIDTGAGVTQVASVAPHGDSVQRVAM ASMPAATTAQAEVSDGNIIRDASLDQYLEAHQQFGLQPVVSGSMPLLRAASLTTQGH
Sequences:
>Translated_217_residues MGSIMGSVSVPMQTNAQASSHAELLSAFVDGELFDGEHPNTILAALDQKDRAAWSCYHLIGDALRSDDLAVSPATSSAFL AGFSARFENEAHVLAPAAMPAARRLLALRRRVIPAFAVAAAAATLTWIVMPQLSGIDTGAGVTQVASVAPHGDSVQRVAM ASMPAATTAQAEVSDGNIIRDASLDQYLEAHQQFGLQPVVSGSMPLLRAASLTTQGH >Mature_216_residues GSIMGSVSVPMQTNAQASSHAELLSAFVDGELFDGEHPNTILAALDQKDRAAWSCYHLIGDALRSDDLAVSPATSSAFLA GFSARFENEAHVLAPAAMPAARRLLALRRRVIPAFAVAAAAATLTWIVMPQLSGIDTGAGVTQVASVAPHGDSVQRVAMA SMPAATTAQAEVSDGNIIRDASLDQYLEAHQQFGLQPVVSGSMPLLRAASLTTQGH
Specific function: Unknown
COG id: COG3073
COG function: function code T; Negative regulator of sigma E activity
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22575; Mature: 22444
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSIMGSVSVPMQTNAQASSHAELLSAFVDGELFDGEHPNTILAALDQKDRAAWSCYHLI CCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCHHHHHHHHHH GDALRSDDLAVSPATSSAFLAGFSARFENEAHVLAPAAMPAARRLLALRRRVIPAFAVAA HHHHCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH AAATLTWIVMPQLSGIDTGAGVTQVASVAPHGDSVQRVAMASMPAATTAQAEVSDGNIIR HHHHHHHHEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEECCCCCEEE DASLDQYLEAHQQFGLQPVVSGSMPLLRAASLTTQGH CCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCCC >Mature Secondary Structure GSIMGSVSVPMQTNAQASSHAELLSAFVDGELFDGEHPNTILAALDQKDRAAWSCYHLI CCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCHHHHHHHHHH GDALRSDDLAVSPATSSAFLAGFSARFENEAHVLAPAAMPAARRLLALRRRVIPAFAVAA HHHHCCCCCEECCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH AAATLTWIVMPQLSGIDTGAGVTQVASVAPHGDSVQRVAMASMPAATTAQAEVSDGNIIR HHHHHHHHEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCEECCCCCEEE DASLDQYLEAHQQFGLQPVVSGSMPLLRAASLTTQGH CCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA