Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 186475558

GI number: 186475558

Start: 890793

End: 891884

Strand: Direct

Name: glxA [H]

Synonym: Bphy_0793

Alternate gene names: 186475558

Gene position: 890793-891884 (Clockwise)

Preceding gene: 186475557

Following gene: 186475559

Centisome position: 25.6

GC content: 70.33

Gene sequence:

>1092_bases
ATGAGCGATACGCCCAACGAAACCGGCCCGCTGGCCAACGATCCGCCCGCGCCCAAAGTTCGCCATGTCGTCTTCGCCGT
CGCGCCCCAACTGGTGCTGCTCGACGCATGCGGCCCGCTCGAGGCGTTCCATCGCGCGGAACTGACGGTGCGGGACGCGC
GCCGCATGTCCGCCGCATCGCCGGCCTCGCACGAGCCGGTCGCCTATCGCACGACGGTCGCGTCTATCGATGGCGGCATG
CTCGACACGTTTCCCGGCTTGCCCGTCGTCACGCAGCGCCTCGATGCGCTCGACGGCGAACCCATCGACACGCTGATCGT
GCCCGGCATCCCCGTTGACGATCCCGGCACGTTGCAGCCCGCGCTGATCGACTGGATCGCACGGCGCGCGCCGCACGTTC
GGCGCGTCTGCTCGGTCTGCACGGGTGCGTTCTATCTGGCCGCCGCGGGCTTGCTCGATGGGCGCCGCGCGACCACGCAC
TGGCGCGACGCCGGGCGGCTCGCCGAGCGCTTTGCGCGCGTGCAGGTCGACGCCGAGCCGATTTTCATCCGCGAGCTGCT
GCCGGGCAGGGCGGGCGACGACGGACGTTCGATATGGACGTCGGCGGGTGTGACGGCGGGTATCGACCTTGCGCTCGCGC
TGATCCAGGAAGACTACGGGCATGCCGTGGCGATGCAGGTGGCGCGGCGGCTGGTCGTGTTCGTCAAACGTCCGGGCGGC
CAGTCGCAGTTCAGCGCGGCGCTTGCCGCGCAGACCTCGGCGGGCGGCGCGTTCGACGGCCTGCACGGCTGGATGGCGTC
GAACCTGAACGGCGATCTGTCCGTCGAGCGGCTCGCCGAAGAGGCGCGCATGAGTCCGCGTAACTTCGCGCGCCGCTACG
TCGACGAAGTGGGACGCACGCCGGCGAAGACGGTATCGGCGATGCGGCTGGAGGCGGCGTCGCGCGCGCTGGCCGAATCG
CGCCGTCCGTTGAAGCGGATCGCGCTCGATTGCGGCTTCGGCAGCGAGCAGAACTTGCGGCGCGCCTTCGTGCGCAGTTT
CGGCGTGTTGCCGCTCGATTACCGCGAGCGTTTCGCATCGGCGCTGCGCTGA

Upstream 100 bases:

>100_bases
CTGGCGGCGCTCGCGACGCTGGCGTTCGCGTGGTCGGGCAAGCGCGTGGCGGCGGCGTCGAATCTGTGAGCACTTTCCGA
TAACGCACGAGGACCCCGCG

Downstream 100 bases:

>100_bases
ACTGGCCGCGCCGATACCACAGCGGCAGCCTTATTGCGCTCGTATAATCGCCTCCTTTCGATAGCTGTTTGACGGGAGTC
AAGATGAGCACGCCAATCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSDTPNETGPLANDPPAPKVRHVVFAVAPQLVLLDACGPLEAFHRAELTVRDARRMSAASPASHEPVAYRTTVASIDGGM
LDTFPGLPVVTQRLDALDGEPIDTLIVPGIPVDDPGTLQPALIDWIARRAPHVRRVCSVCTGAFYLAAAGLLDGRRATTH
WRDAGRLAERFARVQVDAEPIFIRELLPGRAGDDGRSIWTSAGVTAGIDLALALIQEDYGHAVAMQVARRLVVFVKRPGG
QSQFSAALAAQTSAGGAFDGLHGWMASNLNGDLSVERLAEEARMSPRNFARRYVDEVGRTPAKTVSAMRLEAASRALAES
RRPLKRIALDCGFGSEQNLRRAFVRSFGVLPLDYRERFASALR

Sequences:

>Translated_363_residues
MSDTPNETGPLANDPPAPKVRHVVFAVAPQLVLLDACGPLEAFHRAELTVRDARRMSAASPASHEPVAYRTTVASIDGGM
LDTFPGLPVVTQRLDALDGEPIDTLIVPGIPVDDPGTLQPALIDWIARRAPHVRRVCSVCTGAFYLAAAGLLDGRRATTH
WRDAGRLAERFARVQVDAEPIFIRELLPGRAGDDGRSIWTSAGVTAGIDLALALIQEDYGHAVAMQVARRLVVFVKRPGG
QSQFSAALAAQTSAGGAFDGLHGWMASNLNGDLSVERLAEEARMSPRNFARRYVDEVGRTPAKTVSAMRLEAASRALAES
RRPLKRIALDCGFGSEQNLRRAFVRSFGVLPLDYRERFASALR
>Mature_362_residues
SDTPNETGPLANDPPAPKVRHVVFAVAPQLVLLDACGPLEAFHRAELTVRDARRMSAASPASHEPVAYRTTVASIDGGML
DTFPGLPVVTQRLDALDGEPIDTLIVPGIPVDDPGTLQPALIDWIARRAPHVRRVCSVCTGAFYLAAAGLLDGRRATTHW
RDAGRLAERFARVQVDAEPIFIRELLPGRAGDDGRSIWTSAGVTAGIDLALALIQEDYGHAVAMQVARRLVVFVKRPGGQ
SQFSAALAAQTSAGGAFDGLHGWMASNLNGDLSVERLAEEARMSPRNFARRYVDEVGRTPAKTVSAMRLEAASRALAESR
RPLKRIALDCGFGSEQNLRRAFVRSFGVLPLDYRERFASALR

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=84, Percent_Identity=39.2857142857143, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39204; Mature: 39073

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTPNETGPLANDPPAPKVRHVVFAVAPQLVLLDACGPLEAFHRAELTVRDARRMSAAS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCC
PASHEPVAYRTTVASIDGGMLDTFPGLPVVTQRLDALDGEPIDTLIVPGIPVDDPGTLQP
CCCCCCEEEEEEHHHCCCCCHHCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCH
ALIDWIARRAPHVRRVCSVCTGAFYLAAAGLLDGRRATTHWRDAGRLAERFARVQVDAEP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
IFIRELLPGRAGDDGRSIWTSAGVTAGIDLALALIQEDYGHAVAMQVARRLVVFVKRPGG
HHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEEECCCC
QSQFSAALAAQTSAGGAFDGLHGWMASNLNGDLSVERLAEEARMSPRNFARRYVDEVGRT
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PAKTVSAMRLEAASRALAESRRPLKRIALDCGFGSEQNLRRAFVRSFGVLPLDYRERFAS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
ALR
HCC
>Mature Secondary Structure 
SDTPNETGPLANDPPAPKVRHVVFAVAPQLVLLDACGPLEAFHRAELTVRDARRMSAAS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCC
PASHEPVAYRTTVASIDGGMLDTFPGLPVVTQRLDALDGEPIDTLIVPGIPVDDPGTLQP
CCCCCCEEEEEEHHHCCCCCHHCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCH
ALIDWIARRAPHVRRVCSVCTGAFYLAAAGLLDGRRATTHWRDAGRLAERFARVQVDAEP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
IFIRELLPGRAGDDGRSIWTSAGVTAGIDLALALIQEDYGHAVAMQVARRLVVFVKRPGG
HHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHEEEECCCC
QSQFSAALAAQTSAGGAFDGLHGWMASNLNGDLSVERLAEEARMSPRNFARRYVDEVGRT
HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PAKTVSAMRLEAASRALAESRRPLKRIALDCGFGSEQNLRRAFVRSFGVLPLDYRERFAS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
ALR
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]