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The map label for this gene is ydfF [H]

Identifier: 186475555

GI number: 186475555

Start: 888326

End: 889042

Strand: Reverse

Name: ydfF [H]

Synonym: Bphy_0790

Alternate gene names: 186475555

Gene position: 889042-888326 (Counterclockwise)

Preceding gene: 186475560

Following gene: 186475554

Centisome position: 25.55

GC content: 71.13

Gene sequence:

>717_bases
ATGACTGCAGCGCTGCCTTCAGAATCGAATCACTTCCCCGGCTTGAGCCGGATCGGTGCGCTGCTCGCCGATCCGGGCCG
GGCCGCGATGCTGTGGGCGCTGATGGACGGGACCGCGCGTCCGGCGGGCGAGCTGACGCTGATCGCGGGCCTGTCGCCGT
CTGCAGCGAGCGCGCATCTCGCGCGGCTCACCGACGGCGGGCTGCTCGCGCTCGAAGTGCGCGGACGGCATCGCTATTTC
AGGATCGCATCGCCGGAAATCGCCACGACCATCGAGGCGCTCGCCAACGTTGCGCAGGCGGCCGCCCCGCAGCGGCCCGT
GCCGCGCCCGGCGCGTACCGTGCCCGTCGATATGCGCTTTGCCCGCACCTGCTATGACCACATGGCGGGCGAACTGGCCG
TGCGGGTCTACGAACGGCTCGTCGGCGGCGGCCTGCTGACCGTTCACGGCGACGCGCTCGAAGCAACCTCCAACGGCACG
GCGCTGCTCGCCGATTGGGGCATCGACGTATCGCAGCAGCGCACGCGCCGACGCCGCTTCGCCTGCACCTGCCCCGACTG
GAGCGAACGGCGCCCGCATCTCGGCGGCGCGCTCGGCGCGGCGCTGCTCGATTCGTGGTCGGCACAGGGATGGGTCGAAC
GCACCGATCGGCCGCGAATCCTGCGCGTGACGCCCGCCGGCCATCGTCATTTCGACGCCTTTCTCGCGCGAGGATGA

Upstream 100 bases:

>100_bases
CACGTGAAAATGCACGCGACGCTTCACGACAAACTGAAACATCCAATGCGTACGAAGCCTAAAGTGGGCATGACGCCAGA
AACCGATCACGGAGACGCTT

Downstream 100 bases:

>100_bases
ACGATTCGTCTGACAAGATCGCAACGCGCAACAATTTTTGTTACAGCGCCGTCTGGATGGCTTACAAATGAGTGCGCCTT
GAAACAGGGGCGGCGGGTAG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTAALPSESNHFPGLSRIGALLADPGRAAMLWALMDGTARPAGELTLIAGLSPSAASAHLARLTDGGLLALEVRGRHRYF
RIASPEIATTIEALANVAQAAAPQRPVPRPARTVPVDMRFARTCYDHMAGELAVRVYERLVGGGLLTVHGDALEATSNGT
ALLADWGIDVSQQRTRRRRFACTCPDWSERRPHLGGALGAALLDSWSAQGWVERTDRPRILRVTPAGHRHFDAFLARG

Sequences:

>Translated_238_residues
MTAALPSESNHFPGLSRIGALLADPGRAAMLWALMDGTARPAGELTLIAGLSPSAASAHLARLTDGGLLALEVRGRHRYF
RIASPEIATTIEALANVAQAAAPQRPVPRPARTVPVDMRFARTCYDHMAGELAVRVYERLVGGGLLTVHGDALEATSNGT
ALLADWGIDVSQQRTRRRRFACTCPDWSERRPHLGGALGAALLDSWSAQGWVERTDRPRILRVTPAGHRHFDAFLARG
>Mature_237_residues
TAALPSESNHFPGLSRIGALLADPGRAAMLWALMDGTARPAGELTLIAGLSPSAASAHLARLTDGGLLALEVRGRHRYFR
IASPEIATTIEALANVAQAAAPQRPVPRPARTVPVDMRFARTCYDHMAGELAVRVYERLVGGGLLTVHGDALEATSNGTA
LLADWGIDVSQQRTRRRRFACTCPDWSERRPHLGGALGAALLDSWSAQGWVERTDRPRILRVTPAGHRHFDAFLARG

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 25609; Mature: 25477

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAALPSESNHFPGLSRIGALLADPGRAAMLWALMDGTARPAGELTLIAGLSPSAASAHL
CCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHH
ARLTDGGLLALEVRGRHRYFRIASPEIATTIEALANVAQAAAPQRPVPRPARTVPVDMRF
HEECCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
ARTCYDHMAGELAVRVYERLVGGGLLTVHGDALEATSNGTALLADWGIDVSQQRTRRRRF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEECCCCHHHHHHHHHCE
ACTCPDWSERRPHLGGALGAALLDSWSAQGWVERTDRPRILRVTPAGHRHFDAFLARG
EECCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCC
>Mature Secondary Structure 
TAALPSESNHFPGLSRIGALLADPGRAAMLWALMDGTARPAGELTLIAGLSPSAASAHL
CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHH
ARLTDGGLLALEVRGRHRYFRIASPEIATTIEALANVAQAAAPQRPVPRPARTVPVDMRF
HEECCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
ARTCYDHMAGELAVRVYERLVGGGLLTVHGDALEATSNGTALLADWGIDVSQQRTRRRRF
HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCEEEEECCCCHHHHHHHHHCE
ACTCPDWSERRPHLGGALGAALLDSWSAQGWVERTDRPRILRVTPAGHRHFDAFLARG
EECCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]