| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186475122
Identifier: 186475122
GI number: 186475122
Start: 397559
End: 398812
Strand: Direct
Name: 186475122
Synonym: Bphy_0353
Alternate gene names: NA
Gene position: 397559-398812 (Clockwise)
Preceding gene: 186475114
Following gene: 186475123
Centisome position: 11.43
GC content: 70.02
Gene sequence:
>1254_bases GTGGGACAGGAACTGCAAGCATTCGAAACATCGGGCAGACGGGGCGTGAATCACCGCTGGAAGGTACTGGGCGTGGGATT CGCCGCAAACGCGAGCTTCGCGGCCGCGTTTTCGGGTATTCCGACGACGGCCATCTTTCTTCGCAACGGCTATCACATCG ACAACCGCGGACTGGGTCTCGTGCTCGGCATGCTCGGGCTCGGCATCGCCGCCAGCGAACTGCCGTGGGGACTGCTTACG GACCGCTGGGGCGACCGGCGCGTGCTGCTGCTCGGCTTGCTGGCGACGGCGGCCGCGCTGGCCGCGATGGCGGGCTTCGT CGTCCCGCGCGGCGGCGCTGCGCCCGGCATCGTACCGCTAGCCCTTGGACTGCTGGCAGTCGGGCTGCTGGGCGGAAGTG TGAACGGCTCGAGCGGGCGTGCCGTGATGGCGTGGTTTCGCGAAGCCGAACGGGGCCTCGCGATGAGCATCCGGCAGACG GCCGTGCCTGCGGGCGGTGGACTCGGCGCGCTGACGTTGCCGTCGCTGGCCGCGCACTTCGGCTTCGTGGCCGTCTACGG GACGCTTGCTGCGCTGTGCACGATGACGGCATGGTTCGCATGGCGCTGGCTGCACGAGCCGCCTGAATCGGCTGCCAGGG GAGTCCCGGCCGTGGTCGCTGGGCAAGGTGCGCAGGCCGGTGGCGGGAAGCCGGGCGTGTCGGCTGGGCTCGTCCCGCCG CTGCGCGATATCGGCGTGTGGCGTGTCGCATTGGGTATCGGCGTGGGCGGGGTCAGTGCGACGATGGCGGCGGTGCAAGC GGGGGCGGCCGTCGCACGCGTCTGGAGCGGGCACTGGACAGACCGACGCGGCAACCGGCGCCAATACATGCGAGCGTGCA GTGTGCTGACGGCGCTTCTGTTCGCGGCGCTCGCCCTGGTCGCAGCGGGCGCGGGCGGCGCGCAAGGCCTCATCACGGCC GTGCTCGCAGCGATGGTGGTGCTTGGCGGCGTCAGTGCTTCCGCGTGGCATGGCGTTGCCTACACCGAACTCGCGACGCT CGCGGGCACGCGCCGCGCGGGCACCGCGCTCGCAATGGGCAACACATGCGCCTTCATGACGCTGTTCGTCACGCCGCTCG CCATTCCCCCGTTGCTGACGGCAACTTCGTGGCCGGTGGTATGGGCGGTTGCGAGTCTTTGCGCGCTGCTTGCGTTGCCC ATTTTCCCGCGCCCGCTACGCGCGCCGCGCTATGTGCCACGCATCCGGGTATAA
Upstream 100 bases:
>100_bases CATGCTTCGGATTCTCCGATGGATGAGATCTTATTTTCCCACTTTTCCGATTGATCGCGCAACCCTACGATAGCCGTCAA GCGAGTTATACGGAGGCATC
Downstream 100 bases:
>100_bases GCGAACCAGCGCGAACTCGAAGCACTCATTTTTGAGGCGTTCGATAGATGTCGAACGCCTTTTCCTGTTTTTATGCTCAT TTTTTTTGAAGGAAATCGAA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MGQELQAFETSGRRGVNHRWKVLGVGFAANASFAAAFSGIPTTAIFLRNGYHIDNRGLGLVLGMLGLGIAASELPWGLLT DRWGDRRVLLLGLLATAAALAAMAGFVVPRGGAAPGIVPLALGLLAVGLLGGSVNGSSGRAVMAWFREAERGLAMSIRQT AVPAGGGLGALTLPSLAAHFGFVAVYGTLAALCTMTAWFAWRWLHEPPESAARGVPAVVAGQGAQAGGGKPGVSAGLVPP LRDIGVWRVALGIGVGGVSATMAAVQAGAAVARVWSGHWTDRRGNRRQYMRACSVLTALLFAALALVAAGAGGAQGLITA VLAAMVVLGGVSASAWHGVAYTELATLAGTRRAGTALAMGNTCAFMTLFVTPLAIPPLLTATSWPVVWAVASLCALLALP IFPRPLRAPRYVPRIRV
Sequences:
>Translated_417_residues MGQELQAFETSGRRGVNHRWKVLGVGFAANASFAAAFSGIPTTAIFLRNGYHIDNRGLGLVLGMLGLGIAASELPWGLLT DRWGDRRVLLLGLLATAAALAAMAGFVVPRGGAAPGIVPLALGLLAVGLLGGSVNGSSGRAVMAWFREAERGLAMSIRQT AVPAGGGLGALTLPSLAAHFGFVAVYGTLAALCTMTAWFAWRWLHEPPESAARGVPAVVAGQGAQAGGGKPGVSAGLVPP LRDIGVWRVALGIGVGGVSATMAAVQAGAAVARVWSGHWTDRRGNRRQYMRACSVLTALLFAALALVAAGAGGAQGLITA VLAAMVVLGGVSASAWHGVAYTELATLAGTRRAGTALAMGNTCAFMTLFVTPLAIPPLLTATSWPVVWAVASLCALLALP IFPRPLRAPRYVPRIRV >Mature_416_residues GQELQAFETSGRRGVNHRWKVLGVGFAANASFAAAFSGIPTTAIFLRNGYHIDNRGLGLVLGMLGLGIAASELPWGLLTD RWGDRRVLLLGLLATAAALAAMAGFVVPRGGAAPGIVPLALGLLAVGLLGGSVNGSSGRAVMAWFREAERGLAMSIRQTA VPAGGGLGALTLPSLAAHFGFVAVYGTLAALCTMTAWFAWRWLHEPPESAARGVPAVVAGQGAQAGGGKPGVSAGLVPPL RDIGVWRVALGIGVGGVSATMAAVQAGAAVARVWSGHWTDRRGNRRQYMRACSVLTALLFAALALVAAGAGGAQGLITAV LAAMVVLGGVSASAWHGVAYTELATLAGTRRAGTALAMGNTCAFMTLFVTPLAIPPLLTATSWPVVWAVASLCALLALPI FPRPLRAPRYVPRIRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42586; Mature: 42454
Theoretical pI: Translated: 12.00; Mature: 12.00
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQELQAFETSGRRGVNHRWKVLGVGFAANASFAAAFSGIPTTAIFLRNGYHIDNRGLGL CCCHHHHHHCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCCCEEEEEECCEEECCCCHHH VLGMLGLGIAASELPWGLLTDRWGDRRVLLLGLLATAAALAAMAGFVVPRGGAAPGIVPL HHHHHHCCHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH ALGLLAVGLLGGSVNGSSGRAVMAWFREAERGLAMSIRQTAVPAGGGLGALTLPSLAAHF HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH GFVAVYGTLAALCTMTAWFAWRWLHEPPESAARGVPAVVAGQGAQAGGGKPGVSAGLVPP HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC LRDIGVWRVALGIGVGGVSATMAAVQAGAAVARVWSGHWTDRRGNRRQYMRACSVLTALL HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH FAALALVAAGAGGAQGLITAVLAAMVVLGGVSASAWHGVAYTELATLAGTRRAGTALAMG HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCEEEEC NTCAFMTLFVTPLAIPPLLTATSWPVVWAVASLCALLALPIFPRPLRAPRYVPRIRV CHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GQELQAFETSGRRGVNHRWKVLGVGFAANASFAAAFSGIPTTAIFLRNGYHIDNRGLGL CCHHHHHHCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCCCEEEEEECCEEECCCCHHH VLGMLGLGIAASELPWGLLTDRWGDRRVLLLGLLATAAALAAMAGFVVPRGGAAPGIVPL HHHHHHCCHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH ALGLLAVGLLGGSVNGSSGRAVMAWFREAERGLAMSIRQTAVPAGGGLGALTLPSLAAHF HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH GFVAVYGTLAALCTMTAWFAWRWLHEPPESAARGVPAVVAGQGAQAGGGKPGVSAGLVPP HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCC LRDIGVWRVALGIGVGGVSATMAAVQAGAAVARVWSGHWTDRRGNRRQYMRACSVLTALL HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH FAALALVAAGAGGAQGLITAVLAAMVVLGGVSASAWHGVAYTELATLAGTRRAGTALAMG HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCCCCCEEEEC NTCAFMTLFVTPLAIPPLLTATSWPVVWAVASLCALLALPIFPRPLRAPRYVPRIRV CHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]