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The map label for this gene is ymdB [C]

Identifier: 186475040

GI number: 186475040

Start: 313940

End: 314491

Strand: Direct

Name: ymdB [C]

Synonym: Bphy_0271

Alternate gene names: 186475040

Gene position: 313940-314491 (Clockwise)

Preceding gene: 186475039

Following gene: 186475043

Centisome position: 9.02

GC content: 66.12

Gene sequence:

>552_bases
ATGCTCACCATTGGCCATTGCATGCTCGAGGCGCGCGTCGTCGACATCACGACGCTCGATGTCGACGCGGTCGTCAACGC
GGCGAACACGTCATTGCTGGGCGGCGGTGGCGTAGACGGCGCGCTTCATCGCGCGGCCGGCGCCGATCTGCTGCGCGAGT
GCCAGACGCTGGGCGGCTGCGTGACGGGCGACGCGAAGATCACGGGCGGACATCGTCTGAAGGCGCGCCACGTGATTCAT
GCCGTCGGTCCCGTATGGCACGGCGGCGGGCGCGGCGAGGCGGAGCTGCTGGCATCGTGCTACCGACGCTCGCTTGAACT
CGCGCGCGATGCCAAAGCAAAGAGCATTGCATTTCCGGCGATCAGTTGCGGCGTTTATCGCTTCCCGGCCGACGAAGCAG
TACGCATCGCAATGCAAACCGTGATCGACACGCTGCCTCGCGTGTCTACCGTCGAGCGCGTGATCTTCGCGTGTTTCGAC
GAAGCAATGCATGCGCGCTACAAGGCGGAGTTCGGGCGGCGCGTTCAGGCGCCGCCCTCGAACCCCGCCTGA

Upstream 100 bases:

>100_bases
TGAAAGTCTTTTACGCAGCCGGTAAAGGCTAGCGCCGAACGGCTCGCTTCTTTCGTTGTCCACCTCCTATCGTAGCCGTA
TCGGTTCTGGAGGTTTTCCC

Downstream 100 bases:

>100_bases
CGCCACGCCTCGAAGACGACCACGGCGACTGTGTTTGACAGGTTCAGGCTGCGGTTACCGGGGCGCATCGGCAGCCGCAC
GCGCTGCTCGTTCGGAAACC

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MLTIGHCMLEARVVDITTLDVDAVVNAANTSLLGGGGVDGALHRAAGADLLRECQTLGGCVTGDAKITGGHRLKARHVIH
AVGPVWHGGGRGEAELLASCYRRSLELARDAKAKSIAFPAISCGVYRFPADEAVRIAMQTVIDTLPRVSTVERVIFACFD
EAMHARYKAEFGRRVQAPPSNPA

Sequences:

>Translated_183_residues
MLTIGHCMLEARVVDITTLDVDAVVNAANTSLLGGGGVDGALHRAAGADLLRECQTLGGCVTGDAKITGGHRLKARHVIH
AVGPVWHGGGRGEAELLASCYRRSLELARDAKAKSIAFPAISCGVYRFPADEAVRIAMQTVIDTLPRVSTVERVIFACFD
EAMHARYKAEFGRRVQAPPSNPA
>Mature_183_residues
MLTIGHCMLEARVVDITTLDVDAVVNAANTSLLGGGGVDGALHRAAGADLLRECQTLGGCVTGDAKITGGHRLKARHVIH
AVGPVWHGGGRGEAELLASCYRRSLELARDAKAKSIAFPAISCGVYRFPADEAVRIAMQTVIDTLPRVSTVERVIFACFD
EAMHARYKAEFGRRVQAPPSNPA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=161, Percent_Identity=50.9316770186335, Blast_Score=153, Evalue=8e-38,
Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=49.0566037735849, Blast_Score=144, Evalue=3e-35,
Organism=Homo sapiens, GI207450721, Length=148, Percent_Identity=39.1891891891892, Blast_Score=100, Evalue=5e-22,
Organism=Homo sapiens, GI8923143, Length=148, Percent_Identity=39.1891891891892, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI154813199, Length=135, Percent_Identity=40.7407407407407, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=32.9479768786127, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI226371718, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI226371716, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI226371714, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI226371712, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI226371710, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI226371706, Length=166, Percent_Identity=31.9277108433735, Blast_Score=81, Evalue=4e-16,
Organism=Homo sapiens, GI93141018, Length=174, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI93141020, Length=174, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4758496, Length=174, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1787283, Length=151, Percent_Identity=51.6556291390728, Blast_Score=143, Evalue=7e-36,
Organism=Caenorhabditis elegans, GI17538214, Length=161, Percent_Identity=45.9627329192547, Blast_Score=135, Evalue=8e-33,
Organism=Drosophila melanogaster, GI24586353, Length=129, Percent_Identity=36.4341085271318, Blast_Score=80, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19418; Mature: 19418

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIGHCMLEARVVDITTLDVDAVVNAANTSLLGGGGVDGALHRAAGADLLRECQTLGGC
CCCHHHHHHHEEEEEEEEECHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCE
VTGDAKITGGHRLKARHVIHAVGPVWHGGGRGEAELLASCYRRSLELARDAKAKSIAFPA
ECCCCEECCCCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCH
ISCGVYRFPADEAVRIAMQTVIDTLPRVSTVERVIFACFDEAMHARYKAEFGRRVQAPPS
HHCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NPA
CCC
>Mature Secondary Structure
MLTIGHCMLEARVVDITTLDVDAVVNAANTSLLGGGGVDGALHRAAGADLLRECQTLGGC
CCCHHHHHHHEEEEEEEEECHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCE
VTGDAKITGGHRLKARHVIHAVGPVWHGGGRGEAELLASCYRRSLELARDAKAKSIAFPA
ECCCCEECCCCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCH
ISCGVYRFPADEAVRIAMQTVIDTLPRVSTVERVIFACFDEAMHARYKAEFGRRVQAPPS
HHCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]