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The map label for this gene is secB

Identifier: 186475038

GI number: 186475038

Start: 312296

End: 312766

Strand: Direct

Name: secB

Synonym: Bphy_0269

Alternate gene names: 186475038

Gene position: 312296-312766 (Clockwise)

Preceding gene: 186475037

Following gene: 186475039

Centisome position: 8.98

GC content: 61.36

Gene sequence:

>471_bases
ATGTCCGACGAGAACAACCAGCCGTTCTTCAACATCCAGCGCATCTACCTGAAGGACATGTCGCTCGAGCAGCCGAATTC
GCCCGCTATTTTCCTCGAGCAGGAAATGCCGTCGGTCGAAGTGGAAGTGGACGTGAAGGCCGAGCGCCTCGCGGACACGG
TGTTCGAAATCCTCGTCACGGGCACCGTGACGGCCAAGGTCAGCGACAAGGTGGCGTTCCTGATCGAAGCCAAGCAGGCC
GGCATTTTCGACATCCGCAACATCCCGGCTGAGCAGATCGATCCCCTCGTCGGCATTGCATGCCCGACCATTCTGTTCCC
GTACCTGCGCTCGAACATCGCTGATGCGATCACGCGAGCAGGCTTCCCGCCCATCCACCTCGCGGAGATCAACTTCCAGG
CGCTGTACGAGCAACGTCTCGCGCAGATCGCGACGCAGGAAACGGGCGCGGGCAGCGCAGCCCACCACTGA

Upstream 100 bases:

>100_bases
TTCGCACCGGCAGGCTGGACGCCGCCCTTCGGGCGGTCCGCAACACCACGAGATCTGGCGGCACCCGTCCGCCGCAACGA
AATTTAGGGAGTAGAGAACC

Downstream 100 bases:

>100_bases
CGCGTGCAGGCGGTGCCGGGTATGAAGGTCGCCGTTCTCGGCGCCGGTGCATGGGGCACCGCGCTCGCTGGCCATCTGGC
CGCGCGGCACGACACGGTGC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSDENNQPFFNIQRIYLKDMSLEQPNSPAIFLEQEMPSVEVEVDVKAERLADTVFEILVTGTVTAKVSDKVAFLIEAKQA
GIFDIRNIPAEQIDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQIATQETGAGSAAHH

Sequences:

>Translated_156_residues
MSDENNQPFFNIQRIYLKDMSLEQPNSPAIFLEQEMPSVEVEVDVKAERLADTVFEILVTGTVTAKVSDKVAFLIEAKQA
GIFDIRNIPAEQIDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQIATQETGAGSAAHH
>Mature_155_residues
SDENNQPFFNIQRIYLKDMSLEQPNSPAIFLEQEMPSVEVEVDVKAERLADTVFEILVTGTVTAKVSDKVAFLIEAKQAG
IFDIRNIPAEQIDPLVGIACPTILFPYLRSNIADAITRAGFPPIHLAEINFQALYEQRLAQIATQETGAGSAAHH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=157, Percent_Identity=42.0382165605096, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_BURP8 (B2JC98)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001856508.1
- ProteinModelPortal:   B2JC98
- SMR:   B2JC98
- GeneID:   6241771
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_0269
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17240; Mature: 17109

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDENNQPFFNIQRIYLKDMSLEQPNSPAIFLEQEMPSVEVEVDVKAERLADTVFEILVT
CCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHH
GTVTAKVSDKVAFLIEAKQAGIFDIRNIPAEQIDPLVGIACPTILFPYLRSNIADAITRA
CCEEEEECCCEEEEEECCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAQIATQETGAGSAAHH
CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDENNQPFFNIQRIYLKDMSLEQPNSPAIFLEQEMPSVEVEVDVKAERLADTVFEILVT
CCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHH
GTVTAKVSDKVAFLIEAKQAGIFDIRNIPAEQIDPLVGIACPTILFPYLRSNIADAITRA
CCEEEEECCCEEEEEECCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
GFPPIHLAEINFQALYEQRLAQIATQETGAGSAAHH
CCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA