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The map label for this gene is ydcV [H]

Identifier: 183222009

GI number: 183222009

Start: 2746185

End: 2746988

Strand: Reverse

Name: ydcV [H]

Synonym: LEPBI_I2650

Alternate gene names: 183222009

Gene position: 2746988-2746185 (Counterclockwise)

Preceding gene: 183222010

Following gene: 183222008

Centisome position: 76.31

GC content: 43.28

Gene sequence:

>804_bases
ATGCGCTCTAAATGGAACTTAGGATCAATCGGTTTAAAAACGGCGACACTCTTCGGTTTTTTATTCATCCACATCCCTAT
CCTCATCATCATCATGTATGCATTTTCCACTGATGAAAAAACATTCCAGTTCCCACTCCCAGGTTTTACGACCAAGTGGT
TTGGAGTGGCATGGGAACGAAATGACATCTGGGAAGCCATCATCCTTTCCTCACAAGTTGCCTTGATCTCTACGTTTATT
GCGATCTTTTTGGGAACACTCGCATGCCTTGCTGTTTATAGAAGTCAGTTCTTTGGTAAAGAGATCATATCATTTCTTGT
GATTTTACCAATTGCCCTTCCTGGGATTGTCACAGGGATTTCACTGCGATCTGCCATGTCACTTTTTGGAATCCCGTTTA
GCACATGGACCATCGTCATTGCCCACGCGACCTTTTGTATTGTGACTGTTTACAATAACGTGCTCGCAAGGTTACGAAGG
AGTTCCCATTCAATGGTGGAAGCTTCTATGGATTTAGGAGCCAATCCTTGGCAAACGTTTCGGTTTGTGATTTTGCCAAA
TATCGCAACAGCATTGTTAGCTGGAGGAATGTTGTCTTTTGCACTATCATTCGATGAAGTGATTGTCACAACTTTTACAG
CGGGTCAACAATCCACAGTCCCTATTTGGATGTTAACAGAATTCATTCGTCCAAGGCAAAGGCCCGTGACAAACGTAGTT
GCTGTATTTGTGATCCTCGTCACAACGATTCCTATCCTTGTGGCATACTACCTCACCAAAGAGGACGACGGTCGCAAAAA
ATAA

Upstream 100 bases:

>100_bases
GGAACAGCCGGAAACATCCCACTGGCTGCAGCTTTTTCCGTTGTCCCGATCATCATCATGATGATTTATTTATCGATTGC
AAAACGATTAGGAGCTTTTG

Downstream 100 bases:

>100_bases
GAATTTCCATGGGGAAACTTCAGGATTTGAGAAAATAATGAATTTGTTTAGGATTCTTGGAGAGAAGGGATACAAATGAG
AGATGGATTCCTTTGATAAT

Product: putative sperimidine/putrescine transport protein PotC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MRSKWNLGSIGLKTATLFGFLFIHIPILIIIMYAFSTDEKTFQFPLPGFTTKWFGVAWERNDIWEAIILSSQVALISTFI
AIFLGTLACLAVYRSQFFGKEIISFLVILPIALPGIVTGISLRSAMSLFGIPFSTWTIVIAHATFCIVTVYNNVLARLRR
SSHSMVEASMDLGANPWQTFRFVILPNIATALLAGGMLSFALSFDEVIVTTFTAGQQSTVPIWMLTEFIRPRQRPVTNVV
AVFVILVTTIPILVAYYLTKEDDGRKK

Sequences:

>Translated_267_residues
MRSKWNLGSIGLKTATLFGFLFIHIPILIIIMYAFSTDEKTFQFPLPGFTTKWFGVAWERNDIWEAIILSSQVALISTFI
AIFLGTLACLAVYRSQFFGKEIISFLVILPIALPGIVTGISLRSAMSLFGIPFSTWTIVIAHATFCIVTVYNNVLARLRR
SSHSMVEASMDLGANPWQTFRFVILPNIATALLAGGMLSFALSFDEVIVTTFTAGQQSTVPIWMLTEFIRPRQRPVTNVV
AVFVILVTTIPILVAYYLTKEDDGRKK
>Mature_267_residues
MRSKWNLGSIGLKTATLFGFLFIHIPILIIIMYAFSTDEKTFQFPLPGFTTKWFGVAWERNDIWEAIILSSQVALISTFI
AIFLGTLACLAVYRSQFFGKEIISFLVILPIALPGIVTGISLRSAMSLFGIPFSTWTIVIAHATFCIVTVYNNVLARLRR
SSHSMVEASMDLGANPWQTFRFVILPNIATALLAGGMLSFALSFDEVIVTTFTAGQQSTVPIWMLTEFIRPRQRPVTNVV
AVFVILVTTIPILVAYYLTKEDDGRKK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=255, Percent_Identity=58.8235294117647, Blast_Score=264, Evalue=4e-72,
Organism=Escherichia coli, GI1787368, Length=230, Percent_Identity=31.304347826087, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787081, Length=257, Percent_Identity=29.1828793774319, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787080, Length=213, Percent_Identity=30.0469483568075, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788764, Length=175, Percent_Identity=33.1428571428571, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29802; Mature: 29802

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKWNLGSIGLKTATLFGFLFIHIPILIIIMYAFSTDEKTFQFPLPGFTTKWFGVAWER
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHEEEECC
NDIWEAIILSSQVALISTFIAIFLGTLACLAVYRSQFFGKEIISFLVILPIALPGIVTGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLRSAMSLFGIPFSTWTIVIAHATFCIVTVYNNVLARLRRSSHSMVEASMDLGANPWQTF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHE
RFVILPNIATALLAGGMLSFALSFDEVIVTTFTAGQQSTVPIWMLTEFIRPRQRPVTNVV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHH
AVFVILVTTIPILVAYYLTKEDDGRKK
HHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRSKWNLGSIGLKTATLFGFLFIHIPILIIIMYAFSTDEKTFQFPLPGFTTKWFGVAWER
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHEEEECC
NDIWEAIILSSQVALISTFIAIFLGTLACLAVYRSQFFGKEIISFLVILPIALPGIVTGI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLRSAMSLFGIPFSTWTIVIAHATFCIVTVYNNVLARLRRSSHSMVEASMDLGANPWQTF
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHE
RFVILPNIATALLAGGMLSFALSFDEVIVTTFTAGQQSTVPIWMLTEFIRPRQRPVTNVV
EEEEHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHH
AVFVILVTTIPILVAYYLTKEDDGRKK
HHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]