| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is ctpA [H]
Identifier: 183220877
GI number: 183220877
Start: 1551710
End: 1553200
Strand: Reverse
Name: ctpA [H]
Synonym: LEPBI_I1490
Alternate gene names: 183220877
Gene position: 1553200-1551710 (Counterclockwise)
Preceding gene: 183220880
Following gene: 183220876
Centisome position: 43.15
GC content: 33.87
Gene sequence:
>1491_bases ATGAAATTTTCCCTTTTTTACATCAGCATTTTGTCACTATTTTTCTTGCAATTCACTGCTTGTAAACCGGCCCAAAATAA AACGACAAACAAATCTAACTTTAAAATTGATTCCATAGAGACACTCAAAAAAGAATCAAAATACCCTTACCTCTATGTCG GAAAAATCAATTTAGAACATTTTATAAAACTAAAAAATGACATCCATATCCTACATCTAACGAGCGATAAAATCAGTACC TCCGCTTCCTTTGGAGGGGCCATCAAAAAAGCATACCAAATCCTTTCGATCGACATATATCCAAAAAGTTTTTACGATGC CAATCGAAATCATCCCAAACTTTATAGTGATCAAACGATACTCCCCTCGGATGATCATTTTTTCATTCGGATCAAACAAA AAAGCAATCAAATCGATGAAACAAATGAATGGGAGCCAAAAAAAAGAAGGGAACTCTACTTACACTTTACTTCCTTAAAT TTAGATTTTCATGAATTAGAAAAACAACTAGATCACATTTATACCCAAGCAAAAAACGATCCTATTCTTGGCAAAGACCC GAATGGTTTATTAGAAAAAATTATCTTCCTAGCAATGTTAGGTTACACAGAAGAAATTGACCCACATACTCGCGTATACG ATTCCAGAGAAATCAAATCAGACACTTCCTTTAATGTTCTCAATCATATTTCACATAGAGTTTTTTTTGGTTATCCGGAC ATTCTATACATCAAAATTAAAAATTTTATACAATTTAATGACAATTTTACAATTGCAAGTGCCACAAAAAAAATCATAGA ACACGAATTGAATGAAAAAAAGAAAAATCAAAATACAGTGGGAGTATTACTGATCGATTTAAGAGAGAGTGAACAAGCAA ACCTCATCGAACTCCGAAATTTTTTATCACTCTTTACTTCTACCAAAAATTTATTCAGTATCAGAAACCGTTTTGAAGAA AATATATATCCTTCTCTGAAAGGAGAAACAATCCTTTGGGACGGACCCATTGGAATTTTAGTAGGTCCCAAAACGACTGC TGGTGGTGAATTGGTAGCTGGTAGTTTACGTGAAAATAAAAATGCAGTGATTCTTGGTACAAGAACATTTGGCCAAGGAA CATTTCAAATGTTCTTTGAAGTGGGTAAAAAAACTGGATACTTTTATGCAATCACCAATTCCAAAATGTATTTACCTTCC GGAGAAGAAATCCAAGGATTCGGCATCATCCCTGATATCAATGTAGAAAATCCTAACAAAGATCTAAACCCACCACATGA AACTAAATTCTGGAATTGGATCAAACCATCAAAAGAAAAAAATCCATACATTCCTAAAAACATCCAAACGAAACTCGACG AAAGGATGAAACAAAATTCCACAAGCAAAGGGTTGTTCGCTGAAGAAAACCCCATGGATATCGACCCAGTCTTAACTCAA GCCATCGAATATTACAAAACCTATTTGAGTATCATGAAGGAAACCAAGTGA
Upstream 100 bases:
>100_bases CTATTTCTGGGGGAAATGATTCAATCAGGAAAAAAAGTAGAAATTTGTCTAGAATTTCATTTGCTTTTGGGATCACCTAG GAACTGCTAATCCATAATCT
Downstream 100 bases:
>100_bases ACGCATGATTCGTATTCTCCAACCTATCATCATTGTTGTTTTGGGAGTTTTATCTTTCTATTGCACTGAATCCAAATCCT TACTCAAAACAAGTGAAAAA
Product: S41 family peptidase
Products: NA
Alternate protein names: C-terminal-processing protease [H]
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MKFSLFYISILSLFFLQFTACKPAQNKTTNKSNFKIDSIETLKKESKYPYLYVGKINLEHFIKLKNDIHILHLTSDKIST SASFGGAIKKAYQILSIDIYPKSFYDANRNHPKLYSDQTILPSDDHFFIRIKQKSNQIDETNEWEPKKRRELYLHFTSLN LDFHELEKQLDHIYTQAKNDPILGKDPNGLLEKIIFLAMLGYTEEIDPHTRVYDSREIKSDTSFNVLNHISHRVFFGYPD ILYIKIKNFIQFNDNFTIASATKKIIEHELNEKKKNQNTVGVLLIDLRESEQANLIELRNFLSLFTSTKNLFSIRNRFEE NIYPSLKGETILWDGPIGILVGPKTTAGGELVAGSLRENKNAVILGTRTFGQGTFQMFFEVGKKTGYFYAITNSKMYLPS GEEIQGFGIIPDINVENPNKDLNPPHETKFWNWIKPSKEKNPYIPKNIQTKLDERMKQNSTSKGLFAEENPMDIDPVLTQ AIEYYKTYLSIMKETK
Sequences:
>Translated_496_residues MKFSLFYISILSLFFLQFTACKPAQNKTTNKSNFKIDSIETLKKESKYPYLYVGKINLEHFIKLKNDIHILHLTSDKIST SASFGGAIKKAYQILSIDIYPKSFYDANRNHPKLYSDQTILPSDDHFFIRIKQKSNQIDETNEWEPKKRRELYLHFTSLN LDFHELEKQLDHIYTQAKNDPILGKDPNGLLEKIIFLAMLGYTEEIDPHTRVYDSREIKSDTSFNVLNHISHRVFFGYPD ILYIKIKNFIQFNDNFTIASATKKIIEHELNEKKKNQNTVGVLLIDLRESEQANLIELRNFLSLFTSTKNLFSIRNRFEE NIYPSLKGETILWDGPIGILVGPKTTAGGELVAGSLRENKNAVILGTRTFGQGTFQMFFEVGKKTGYFYAITNSKMYLPS GEEIQGFGIIPDINVENPNKDLNPPHETKFWNWIKPSKEKNPYIPKNIQTKLDERMKQNSTSKGLFAEENPMDIDPVLTQ AIEYYKTYLSIMKETK >Mature_496_residues MKFSLFYISILSLFFLQFTACKPAQNKTTNKSNFKIDSIETLKKESKYPYLYVGKINLEHFIKLKNDIHILHLTSDKIST SASFGGAIKKAYQILSIDIYPKSFYDANRNHPKLYSDQTILPSDDHFFIRIKQKSNQIDETNEWEPKKRRELYLHFTSLN LDFHELEKQLDHIYTQAKNDPILGKDPNGLLEKIIFLAMLGYTEEIDPHTRVYDSREIKSDTSFNVLNHISHRVFFGYPD ILYIKIKNFIQFNDNFTIASATKKIIEHELNEKKKNQNTVGVLLIDLRESEQANLIELRNFLSLFTSTKNLFSIRNRFEE NIYPSLKGETILWDGPIGILVGPKTTAGGELVAGSLRENKNAVILGTRTFGQGTFQMFFEVGKKTGYFYAITNSKMYLPS GEEIQGFGIIPDINVENPNKDLNPPHETKFWNWIKPSKEKNPYIPKNIQTKLDERMKQNSTSKGLFAEENPMDIDPVLTQ AIEYYKTYLSIMKETK
Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 57473; Mature: 57473
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSLFYISILSLFFLQFTACKPAQNKTTNKSNFKIDSIETLKKESKYPYLYVGKINLEH CEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHCCCCCEEEEEEECHHH FIKLKNDIHILHLTSDKISTSASFGGAIKKAYQILSIDIYPKSFYDANRNHPKLYSDQTI HEEECCCEEEEEEECCCCCCCCCCCHHHHHHEEEEEEEECCCHHCCCCCCCCCCCCCCEE LPSDDHFFIRIKQKSNQIDETNEWEPKKRRELYLHFTSLNLDFHELEKQLDHIYTQAKND CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHCCCC PILGKDPNGLLEKIIFLAMLGYTEEIDPHTRVYDSREIKSDTSFNVLNHISHRVFFGYPD CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHCCCCCCHHHHHHHCCEEEECCCC ILYIKIKNFIQFNDNFTIASATKKIIEHELNEKKKNQNTVGVLLIDLRESEQANLIELRN EEEEEEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH FLSLFTSTKNLFSIRNRFEENIYPSLKGETILWDGPIGILVGPKTTAGGELVAGSLRENK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECHHCCCC NAVILGTRTFGQGTFQMFFEVGKKTGYFYAITNSKMYLPSGEEIQGFGIIPDINVENPNK CEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCEECCCCCCCCCCCC DLNPPHETKFWNWIKPSKEKNPYIPKNIQTKLDERMKQNSTSKGLFAEENPMDIDPVLTQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH AIEYYKTYLSIMKETK HHHHHHHHHHHHHCCC >Mature Secondary Structure MKFSLFYISILSLFFLQFTACKPAQNKTTNKSNFKIDSIETLKKESKYPYLYVGKINLEH CEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHCCCCCEEEEEEECHHH FIKLKNDIHILHLTSDKISTSASFGGAIKKAYQILSIDIYPKSFYDANRNHPKLYSDQTI HEEECCCEEEEEEECCCCCCCCCCCHHHHHHEEEEEEEECCCHHCCCCCCCCCCCCCCEE LPSDDHFFIRIKQKSNQIDETNEWEPKKRRELYLHFTSLNLDFHELEKQLDHIYTQAKND CCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHCCCC PILGKDPNGLLEKIIFLAMLGYTEEIDPHTRVYDSREIKSDTSFNVLNHISHRVFFGYPD CCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHCCCCCCHHHHHHHCCEEEECCCC ILYIKIKNFIQFNDNFTIASATKKIIEHELNEKKKNQNTVGVLLIDLRESEQANLIELRN EEEEEEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHH FLSLFTSTKNLFSIRNRFEENIYPSLKGETILWDGPIGILVGPKTTAGGELVAGSLRENK HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEECCCCCCCCCEEECHHCCCC NAVILGTRTFGQGTFQMFFEVGKKTGYFYAITNSKMYLPSGEEIQGFGIIPDINVENPNK CEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCEECCCCCCCCCCCC DLNPPHETKFWNWIKPSKEKNPYIPKNIQTKLDERMKQNSTSKGLFAEENPMDIDPVLTQ CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH AIEYYKTYLSIMKETK HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141685 [H]