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The map label for this gene is nlpD [H]

Identifier: 183220818

GI number: 183220818

Start: 1493737

End: 1494861

Strand: Reverse

Name: nlpD [H]

Synonym: LEPBI_I1430

Alternate gene names: 183220818

Gene position: 1494861-1493737 (Counterclockwise)

Preceding gene: 183220819

Following gene: 183220817

Centisome position: 41.53

GC content: 40.0

Gene sequence:

>1125_bases
ATGCTACTTCGTTCACCTGAAAAGTCTACGATCGGCAAGCATGTGTTACGTTGGGGAAACATCAATGTCATCCAAGTTTC
CCCCGGTAAGTATTTTTATAACCTCCAATCACAATCCAGTGTCCTTCATGGAACGATCGATCTCAATCGCAAACGGTATC
GTATCCTTCCACTACTCAGCTTTTCATTTATCTTTGCTTTTTTACTTTCTGTCATCGTAGACAAACAAACTTACGAAGAA
AGTCTGATGGAAAAAGAATTTCTTAGTATGTCCACTGAGGTCGAAGAAAACGACACCAAAGACAAAGAAGCAAAACTTGC
TGATGCCAAATACCTACAAGAAACCGAAGATAAAAAAAATGCAATCCTACGCTCTGCGGAACTCGACAAACTTGCAGACA
ATAAAAACAAAAAACTAAAAGTCACTCAATACAAAGTGAAAAAAAATGAAACCTTATCGGACATTGCGCGTCGGTTTAAG
GTTTCCGTTGAATCCATTGCTGGAAGTTCTGGTATCAATCCAGAAGTATCTCTCATCTCTGGCCAAATCCTAAATATCCC
CAACAAACAAGGATTAATGTATAAGTTGAAAAAAGGGGAAACTCTAGCAAAAGTAGCCGATTATTATAAAGTCAAAATTG
ATGATATCTATGCGGAAAACCAATTAGAGGATTATGATTTATTTAAGTCTGGTCAAAAGGTTTTCCTACCGGGAGCCATC
ATCCCAGAAACAGGTCCTGTTTGGCGGATCCCTGTGGCATCCAAAGTCATCACTTCTGGTTGGGGCACCCGTTCCTACCC
ACAATACAAATTCCATATGGCCCTTGACCTACGTGCCAATTACGAATCTGTTTATGCCGCAAGGAAAGGAAAAGTCACCT
ACTCTGGTTGGATGGGTGGCTATGGAAATGCCATCATTTTATCTCACGATGACAATTACCAAACGCTTTATGCTCACAAC
TCAAAACTTTACGTGAAAGAAGGAGATTATGTGAGTGCCGGAAAAATCATCTCTCGTTCTGGTTGCACAGGGTATTGTTT
TGGTCCCCATTTACACTTCGAAGTCATCAAAGATGGTAAGAACATCAATCCCACAAAACTCATCAAAGGATTTTCATACA
AATGA

Upstream 100 bases:

>100_bases
ACAGGCGGACAGAAAAAAGACGTTCGTAAGATTGTAGAAGAATCCTTTGGCGGAATCAAATCTTTAGATTCGAAGGACTA
ACGTAATTTCCATTTAACAC

Downstream 100 bases:

>100_bases
AACAGAAACCATCGCAAAATCTATTGCTATCACATCACATTGATTCTCCTTCCACATTAGAATCCGATTGCCATCCTACT
CAGGTTTCCCATCCTACCGT

Product: putative metalloendopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MLLRSPEKSTIGKHVLRWGNINVIQVSPGKYFYNLQSQSSVLHGTIDLNRKRYRILPLLSFSFIFAFLLSVIVDKQTYEE
SLMEKEFLSMSTEVEENDTKDKEAKLADAKYLQETEDKKNAILRSAELDKLADNKNKKLKVTQYKVKKNETLSDIARRFK
VSVESIAGSSGINPEVSLISGQILNIPNKQGLMYKLKKGETLAKVADYYKVKIDDIYAENQLEDYDLFKSGQKVFLPGAI
IPETGPVWRIPVASKVITSGWGTRSYPQYKFHMALDLRANYESVYAARKGKVTYSGWMGGYGNAIILSHDDNYQTLYAHN
SKLYVKEGDYVSAGKIISRSGCTGYCFGPHLHFEVIKDGKNINPTKLIKGFSYK

Sequences:

>Translated_374_residues
MLLRSPEKSTIGKHVLRWGNINVIQVSPGKYFYNLQSQSSVLHGTIDLNRKRYRILPLLSFSFIFAFLLSVIVDKQTYEE
SLMEKEFLSMSTEVEENDTKDKEAKLADAKYLQETEDKKNAILRSAELDKLADNKNKKLKVTQYKVKKNETLSDIARRFK
VSVESIAGSSGINPEVSLISGQILNIPNKQGLMYKLKKGETLAKVADYYKVKIDDIYAENQLEDYDLFKSGQKVFLPGAI
IPETGPVWRIPVASKVITSGWGTRSYPQYKFHMALDLRANYESVYAARKGKVTYSGWMGGYGNAIILSHDDNYQTLYAHN
SKLYVKEGDYVSAGKIISRSGCTGYCFGPHLHFEVIKDGKNINPTKLIKGFSYK
>Mature_374_residues
MLLRSPEKSTIGKHVLRWGNINVIQVSPGKYFYNLQSQSSVLHGTIDLNRKRYRILPLLSFSFIFAFLLSVIVDKQTYEE
SLMEKEFLSMSTEVEENDTKDKEAKLADAKYLQETEDKKNAILRSAELDKLADNKNKKLKVTQYKVKKNETLSDIARRFK
VSVESIAGSSGINPEVSLISGQILNIPNKQGLMYKLKKGETLAKVADYYKVKIDDIYAENQLEDYDLFKSGQKVFLPGAI
IPETGPVWRIPVASKVITSGWGTRSYPQYKFHMALDLRANYESVYAARKGKVTYSGWMGGYGNAIILSHDDNYQTLYAHN
SKLYVKEGDYVSAGKIISRSGCTGYCFGPHLHFEVIKDGKNINPTKLIKGFSYK

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=34.1463414634146, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082174, Length=231, Percent_Identity=27.7056277056277, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 42371; Mature: 42371

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLRSPEKSTIGKHVLRWGNINVIQVSPGKYFYNLQSQSSVLHGTIDLNRKRYRILPLLS
CCCCCCCHHHHHHHHHEECCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEHHHH
FSFIFAFLLSVIVDKQTYEESLMEKEFLSMSTEVEENDTKDKEAKLADAKYLQETEDKKN
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AILRSAELDKLADNKNKKLKVTQYKVKKNETLSDIARRFKVSVESIAGSSGINPEVSLIS
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
GQILNIPNKQGLMYKLKKGETLAKVADYYKVKIDDIYAENQLEDYDLFKSGQKVFLPGAI
CEEEECCCCCCEEEEECCCCHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCEEEECCEE
IPETGPVWRIPVASKVITSGWGTRSYPQYKFHMALDLRANYESVYAARKGKVTYSGWMGG
CCCCCCEEECCCHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCEEEECCCCC
YGNAIILSHDDNYQTLYAHNSKLYVKEGDYVSAGKIISRSGCTGYCFGPHLHFEVIKDGK
CCCEEEEEECCCEEEEEEECCEEEEECCCEEECCCEEECCCCEEEEECCEEEEEEEECCC
NINPTKLIKGFSYK
CCCHHHHCCCCCCC
>Mature Secondary Structure
MLLRSPEKSTIGKHVLRWGNINVIQVSPGKYFYNLQSQSSVLHGTIDLNRKRYRILPLLS
CCCCCCCHHHHHHHHHEECCEEEEEECCCCEEEEECCCCCEEEEEEECCCCEEEEEHHHH
FSFIFAFLLSVIVDKQTYEESLMEKEFLSMSTEVEENDTKDKEAKLADAKYLQETEDKKN
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AILRSAELDKLADNKNKKLKVTQYKVKKNETLSDIARRFKVSVESIAGSSGINPEVSLIS
HHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
GQILNIPNKQGLMYKLKKGETLAKVADYYKVKIDDIYAENQLEDYDLFKSGQKVFLPGAI
CEEEECCCCCCEEEEECCCCHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCEEEECCEE
IPETGPVWRIPVASKVITSGWGTRSYPQYKFHMALDLRANYESVYAARKGKVTYSGWMGG
CCCCCCEEECCCHHHHHHCCCCCCCCCCEEEEEEEEEECCHHHHHHHHCCCEEEECCCCC
YGNAIILSHDDNYQTLYAHNSKLYVKEGDYVSAGKIISRSGCTGYCFGPHLHFEVIKDGK
CCCEEEEEECCCEEEEEEECCEEEEECCCEEECCCEEECCCCEEEEECCEEEEEEEECCC
NINPTKLIKGFSYK
CCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8132457; 9278503; 8208244 [H]