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The map label for this gene is marA [C]

Identifier: 183220815

GI number: 183220815

Start: 1489906

End: 1490694

Strand: Reverse

Name: marA [C]

Synonym: LEPBI_I1427

Alternate gene names: 183220815

Gene position: 1490694-1489906 (Counterclockwise)

Preceding gene: 183220817

Following gene: 183220811

Centisome position: 41.41

GC content: 42.08

Gene sequence:

>789_bases
ATGGATGGCAAAAGAAAAGGAAGTCTTTTTTACTTTGGAGAACGGATCTTACTTGGAACCCTTGGGCTTGTGACAGAACC
ACATTCCCACTACGCTGTATCCATCCTTGTTTCCAAACAAACTCCATTCCTTTTGACCACCAAAGAAAATGAAACCATCC
AAACAGAAGGGATCATCATCTCCCCTAATTTTTTCCATCGTTTAGAAGCAAGTGATACAGAAATCGTTGTGATCCAATTG
GATCCGAAATCGGATGAATTCAAAAAAATTGAAATGAAGGATTCCTATACACTGCTTAGTCCAAACACCATTGAAACCAT
CCAAATTTTGTCTGAACCGTTGTTTACCGAAGATCTCAATTGTGAGAAAGCGCGATTGGTGTATGAACAAATTTTGGAAG
TGCTCGGATCCAAAAAACAAAACAGGGAATGGGATCCAAGGATTGATCTGGCAATTGGAAGGATCAAAAACACGCTCCCG
AGTCCCATCAGCTTGGCTGTTCTCTCCAATGAAACTGGGATTTCCAAAGACCGTTTCATGCACCTATTCAAAGAGAATAT
GGGAATCCCACTCCGCCAGTATTTGTTATGGCAACGGTTACACATTGCGGCAAGGCTTTTGCAGGGGGGTGAAAATCTAA
CGACGGCATCTCATGCGGCTGGTTTTAGCGACCAGGCCCATTTATCCCGAACGTTTAAAAAGATGTTTGGAGTGAAACCC
TCACTTTTTTTGGGAGGGTCTCATTTAACTAAGGTTTGTTTTTGTGATTCAAACCCAGAACCGAATTGA

Upstream 100 bases:

>100_bases
TAAAAATCCACTCCCAATAAAAATGGAAAAAAACAAAATCCATTGTTTCATTCGATAATCCTTGCCTTTTTCAAAACCTT
CGATAAGATTTTTTTAGTAT

Downstream 100 bases:

>100_bases
TCCAATTCATGGATTGAATCCTTACGCCGTTTTTTCGACTCGAAAGTCTTTCCAAACTCCCTTTTGTTTTAATTCATCAT
CCACGGCTTTTTTTAAATCC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Domain Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC/XylS Family; Transcriptional Regulator Arac Family Protein; AraC Family Transcription Regulator; Helix-Turn-Helix Arac Domain Protein; AraC/XylS Family Transcription Factor; Arac Family Transcriptional Regulator; Transcriptional Regulator Protein; Helix-Turn-Helix AraC Domain

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MDGKRKGSLFYFGERILLGTLGLVTEPHSHYAVSILVSKQTPFLLTTKENETIQTEGIIISPNFFHRLEASDTEIVVIQL
DPKSDEFKKIEMKDSYTLLSPNTIETIQILSEPLFTEDLNCEKARLVYEQILEVLGSKKQNREWDPRIDLAIGRIKNTLP
SPISLAVLSNETGISKDRFMHLFKENMGIPLRQYLLWQRLHIAARLLQGGENLTTASHAAGFSDQAHLSRTFKKMFGVKP
SLFLGGSHLTKVCFCDSNPEPN

Sequences:

>Translated_262_residues
MDGKRKGSLFYFGERILLGTLGLVTEPHSHYAVSILVSKQTPFLLTTKENETIQTEGIIISPNFFHRLEASDTEIVVIQL
DPKSDEFKKIEMKDSYTLLSPNTIETIQILSEPLFTEDLNCEKARLVYEQILEVLGSKKQNREWDPRIDLAIGRIKNTLP
SPISLAVLSNETGISKDRFMHLFKENMGIPLRQYLLWQRLHIAARLLQGGENLTTASHAAGFSDQAHLSRTFKKMFGVKP
SLFLGGSHLTKVCFCDSNPEPN
>Mature_262_residues
MDGKRKGSLFYFGERILLGTLGLVTEPHSHYAVSILVSKQTPFLLTTKENETIQTEGIIISPNFFHRLEASDTEIVVIQL
DPKSDEFKKIEMKDSYTLLSPNTIETIQILSEPLFTEDLNCEKARLVYEQILEVLGSKKQNREWDPRIDLAIGRIKNTLP
SPISLAVLSNETGISKDRFMHLFKENMGIPLRQYLLWQRLHIAARLLQGGENLTTASHAAGFSDQAHLSRTFKKMFGVKP
SLFLGGSHLTKVCFCDSNPEPN

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29603; Mature: 29603

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGKRKGSLFYFGERILLGTLGLVTEPHSHYAVSILVSKQTPFLLTTKENETIQTEGIII
CCCCCCCCEEEECCHHHHHHHHHEECCCCCEEEEEEEECCCCEEEEECCCCEEEECCEEE
SPNFFHRLEASDTEIVVIQLDPKSDEFKKIEMKDSYTLLSPNTIETIQILSEPLFTEDLN
CCCHHEEECCCCCEEEEEEECCCCCCEEEEEECCCEEEECCCHHHHHHHHHCCCCCCCCC
CEKARLVYEQILEVLGSKKQNREWDPRIDLAIGRIKNTLPSPISLAVLSNETGISKDRFM
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEHHHHHHCCCCCEEEEEEECCCCCCHHHHH
HLFKENMGIPLRQYLLWQRLHIAARLLQGGENLTTASHAAGFSDQAHLSRTFKKMFGVKP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCC
SLFLGGSHLTKVCFCDSNPEPN
CEEECCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MDGKRKGSLFYFGERILLGTLGLVTEPHSHYAVSILVSKQTPFLLTTKENETIQTEGIII
CCCCCCCCEEEECCHHHHHHHHHEECCCCCEEEEEEEECCCCEEEEECCCCEEEECCEEE
SPNFFHRLEASDTEIVVIQLDPKSDEFKKIEMKDSYTLLSPNTIETIQILSEPLFTEDLN
CCCHHEEECCCCCEEEEEEECCCCCCEEEEEECCCEEEECCCHHHHHHHHHCCCCCCCCC
CEKARLVYEQILEVLGSKKQNREWDPRIDLAIGRIKNTLPSPISLAVLSNETGISKDRFM
CHHHHHHHHHHHHHHCCCCCCCCCCCCHHEEHHHHHHCCCCCEEEEEEECCCCCCHHHHH
HLFKENMGIPLRQYLLWQRLHIAARLLQGGENLTTASHAAGFSDQAHLSRTFKKMFGVKP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCC
SLFLGGSHLTKVCFCDSNPEPN
CEEECCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA