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The map label for this gene is yciR [C]

Identifier: 183219731

GI number: 183219731

Start: 303492

End: 305576

Strand: Reverse

Name: yciR [C]

Synonym: LEPBI_I0307

Alternate gene names: 183219731

Gene position: 305576-303492 (Counterclockwise)

Preceding gene: 183219732

Following gene: 183219730

Centisome position: 8.49

GC content: 41.87

Gene sequence:

>2085_bases
ATGCGAAATGAGCCTTTAGGCAAAAACATTCTCTCTGGACTCACAGTTAAATCACTCCTGAGTGAATATCCAAACAGCTT
CCAAGTTTTGGATTGGGAAGGTAATTTTGTTTCGGTGACAGATCGGTTTGCCCGGTTTTTAGAATTTGAACCCAAAGAAA
TTGTTGGTAAATCCATCCTCAACTTCACACAAGAAGACGATAAAGAAAACACTCAAAACACTTTCGAGGGATTGGGTGAA
AATCCGAATATTGTGAATTTCGAAAATCGACTGGTTACCAAATCCAAAGAAGAGGTTTGGATCATCTGGTTACTCATCCC
ATTAACAGATTCCAAAATCATTTTGGGTTTTGACAGGGATGTCACCATCCAAAAAGACATCTCCTTTGAATTTTTATTAC
AACAACAAAAGTATAAGTCCATCTTTGACAACCTTCCCATGGGCATTGCCATCACCGATGAAAAAGGAAAAATTGTCGAA
ACCAACAAAACCGCAAGGACATACTTTGACATCCAAGATGGAGAACTTCTCAATCGCACATTAAACATTCGTAAGTACAC
TCTCATCCAACCCAATGGAACCAAAATTTATCCACGTAAATCAAGTTTGATGCGAGCGCTTCGGCACAAAGAAGTGATTC
GGAATTTAGAAATTGGGATGATTAAGGAAAACAAAATCACTTGGTTTGATATCCTCGCCACACCCATTCCCATTGAAAAC
TTTGGACTCGCAGTAGCCTTCCTTGACATCACTCAAAGAAGGCATGCAGAAGAAAAAATTGCCTACATGGCTTTTTTTGA
CCAACTCACAAACCTACCGAACAGAAACTCACTCATCGACAAACTCTTCCCAATTTTTGAAGAAGCGAGACGGCATGGGA
ACTTGGTAGGGATCCTTGCCATTGATTTGGATAATTTTAAGATCATCAATGATTCAAGAGGTCACGACTTTGGAGATAAA
ATCATCAAACTGGTTGCCTATCGCATTCGCGAAAGCATTCGAGTCTATGATCTTATCAGTAGACAAGGTGGTGATGAGTT
CACTGTTGTCTTACCTGATTTATCAAACGAACGAGATGCCGCCGTCATATCTGAATCCATTTTAGATGCGATGACTCACC
CCTTTGTCATCGATGGTGAAAGAATATTTGTGAACATTTCGATAGGGATCGCCTTATATCCAACAGACGGAAAGGATTCC
AATACTCTTCTCAAAAATGCAGACAGTGCACTGAACCTTGCCAAGTCACAAGGGAAAAACTGTTATGTGTTCTTTACAGA
AGAATTACAAACCGTAGTTGCCGAACGATTGGAAATTGAAAATCGGATGCGGATTGCCATCATCGAAAACCAATTCACTT
TGATGTACCAACCCAAAATTGATTTGTACACAAGAAAACCAGTTGGGGTAGAGGCTCTCATTCGTTGGCGCCATCCGGAA
CGTGGGCTTATCTCTCCCAATGTTTTCATCCCCATCTCGGAAGAAACGGGGATGATCCTTGCGATTGGGGAATGGGTGAT
TAAGTCCGCTATCAAAACCATGCGTGAATGGAAAGATCATGGGGTCAAAGATATCTCGATGGCCGTAAATATCTCCACCA
AACAATTCAAACACGAAAGGCTGATCTCAACCATCGCCGAAAATCTAAAATTATACAAAGTGGACCCACATGACTTGGAA
GTGGAACTCACAGAAAGTTCTGTGATGGAAAACGCGGATGCGGCGGTGCGCACCATGCAAGAGATTCGTAAACTGGGTGC
CAAAATTGCCATCGACGATTTTGGAACGGGTTATAGTAGTTTGGGATACTTAAAAAAACTCCCGATTTCCTCCTTAAAAA
TAGACCGTTCCTTTGTTTCGGAGATCACAACCGACAAAGATTCCAAAACCATCATCCATGCCGTCTCCAACCTGGCACAT
AACCTTGGTTTGAGTGTAGTGGCGGAGGGAGCAGAAACTGAGGAACAAGTCAGGTTACTTGCCGAAAGTGGAGTGGACCA
AATCCAGGGGTTTTATTTTGCCAAACCAATGACATCCGAGGACTGCCTGCATTTTCTGAAAACAGAACTTGGAATTTCCG
ATTGA

Upstream 100 bases:

>100_bases
AAAAAATCCATGATTAAAAGTAAGTCCGGATGGTCGCCATTCGAAGGGTTCCAATTTCCAGGATCCATCGAAGCGGTCTA
TTATTTAGGCAAAGAAATAC

Downstream 100 bases:

>100_bases
CCCGTTTGCTTTCCCGCCGTTTTTAACAAATAAGGATTTCACTTGAAACTTTCAGTTGATTGGTTAAACGAATTTACCCC
GCTCTCCCAGATTCCCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MRNEPLGKNILSGLTVKSLLSEYPNSFQVLDWEGNFVSVTDRFARFLEFEPKEIVGKSILNFTQEDDKENTQNTFEGLGE
NPNIVNFENRLVTKSKEEVWIIWLLIPLTDSKIILGFDRDVTIQKDISFEFLLQQQKYKSIFDNLPMGIAITDEKGKIVE
TNKTARTYFDIQDGELLNRTLNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNLEIGMIKENKITWFDILATPIPIEN
FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNLPNRNSLIDKLFPIFEEARRHGNLVGILAIDLDNFKIINDSRGHDFGDK
IIKLVAYRIRESIRVYDLISRQGGDEFTVVLPDLSNERDAAVISESILDAMTHPFVIDGERIFVNISIGIALYPTDGKDS
NTLLKNADSALNLAKSQGKNCYVFFTEELQTVVAERLEIENRMRIAIIENQFTLMYQPKIDLYTRKPVGVEALIRWRHPE
RGLISPNVFIPISEETGMILAIGEWVIKSAIKTMREWKDHGVKDISMAVNISTKQFKHERLISTIAENLKLYKVDPHDLE
VELTESSVMENADAAVRTMQEIRKLGAKIAIDDFGTGYSSLGYLKKLPISSLKIDRSFVSEITTDKDSKTIIHAVSNLAH
NLGLSVVAEGAETEEQVRLLAESGVDQIQGFYFAKPMTSEDCLHFLKTELGISD

Sequences:

>Translated_694_residues
MRNEPLGKNILSGLTVKSLLSEYPNSFQVLDWEGNFVSVTDRFARFLEFEPKEIVGKSILNFTQEDDKENTQNTFEGLGE
NPNIVNFENRLVTKSKEEVWIIWLLIPLTDSKIILGFDRDVTIQKDISFEFLLQQQKYKSIFDNLPMGIAITDEKGKIVE
TNKTARTYFDIQDGELLNRTLNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNLEIGMIKENKITWFDILATPIPIEN
FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNLPNRNSLIDKLFPIFEEARRHGNLVGILAIDLDNFKIINDSRGHDFGDK
IIKLVAYRIRESIRVYDLISRQGGDEFTVVLPDLSNERDAAVISESILDAMTHPFVIDGERIFVNISIGIALYPTDGKDS
NTLLKNADSALNLAKSQGKNCYVFFTEELQTVVAERLEIENRMRIAIIENQFTLMYQPKIDLYTRKPVGVEALIRWRHPE
RGLISPNVFIPISEETGMILAIGEWVIKSAIKTMREWKDHGVKDISMAVNISTKQFKHERLISTIAENLKLYKVDPHDLE
VELTESSVMENADAAVRTMQEIRKLGAKIAIDDFGTGYSSLGYLKKLPISSLKIDRSFVSEITTDKDSKTIIHAVSNLAH
NLGLSVVAEGAETEEQVRLLAESGVDQIQGFYFAKPMTSEDCLHFLKTELGISD
>Mature_694_residues
MRNEPLGKNILSGLTVKSLLSEYPNSFQVLDWEGNFVSVTDRFARFLEFEPKEIVGKSILNFTQEDDKENTQNTFEGLGE
NPNIVNFENRLVTKSKEEVWIIWLLIPLTDSKIILGFDRDVTIQKDISFEFLLQQQKYKSIFDNLPMGIAITDEKGKIVE
TNKTARTYFDIQDGELLNRTLNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNLEIGMIKENKITWFDILATPIPIEN
FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNLPNRNSLIDKLFPIFEEARRHGNLVGILAIDLDNFKIINDSRGHDFGDK
IIKLVAYRIRESIRVYDLISRQGGDEFTVVLPDLSNERDAAVISESILDAMTHPFVIDGERIFVNISIGIALYPTDGKDS
NTLLKNADSALNLAKSQGKNCYVFFTEELQTVVAERLEIENRMRIAIIENQFTLMYQPKIDLYTRKPVGVEALIRWRHPE
RGLISPNVFIPISEETGMILAIGEWVIKSAIKTMREWKDHGVKDISMAVNISTKQFKHERLISTIAENLKLYKVDPHDLE
VELTESSVMENADAAVRTMQEIRKLGAKIAIDDFGTGYSSLGYLKKLPISSLKIDRSFVSEITTDKDSKTIIHAVSNLAH
NLGLSVVAEGAETEEQVRLLAESGVDQIQGFYFAKPMTSEDCLHFLKTELGISD

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=37.4133949191686, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI87081921, Length=448, Percent_Identity=32.8125, Blast_Score=258, Evalue=1e-69,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=27.6887871853547, Blast_Score=186, Evalue=6e-48,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=37.6984126984127, Blast_Score=173, Evalue=4e-44,
Organism=Escherichia coli, GI1788502, Length=270, Percent_Identity=31.1111111111111, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=32.2709163346614, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=32.6446280991736, Blast_Score=139, Evalue=9e-34,
Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=32.9365079365079, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1787055, Length=290, Percent_Identity=30.3448275862069, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788849, Length=256, Percent_Identity=33.203125, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=30.6382978723404, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788381, Length=572, Percent_Identity=22.3776223776224, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=243, Percent_Identity=28.3950617283951, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=32.9341317365269, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=31.547619047619, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=35.8490566037736, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=36.5384615384615, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=31.3186813186813, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=33.5365853658537, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=31.9148936170213, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081974, Length=107, Percent_Identity=40.1869158878505, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=24.4343891402715, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=31.2101910828025, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 79038; Mature: 79038

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNEPLGKNILSGLTVKSLLSEYPNSFQVLDWEGNFVSVTDRFARFLEFEPKEIVGKSIL
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHCCCHHHHHHHHHH
NFTQEDDKENTQNTFEGLGENPNIVNFENRLVTKSKEEVWIIWLLIPLTDSKIILGFDRD
HCCCCCCCCHHHHHHHCCCCCCCEEECCCCEECCCCCCEEEEEEEEECCCCEEEEEECCC
VTIQKDISFEFLLQQQKYKSIFDNLPMGIAITDEKGKIVETNKTARTYFDIQDGELLNRT
EEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCEEEEEECCCCHHHHHE
LNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNLEIGMIKENKITWFDILATPIPIEN
ECEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCC
FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNLPNRNSLIDKLFPIFEEARRHGNLVGILA
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
IDLDNFKIINDSRGHDFGDKIIKLVAYRIRESIRVYDLISRQGGDEFTVVLPDLSNERDA
EECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
AVISESILDAMTHPFVIDGERIFVNISIGIALYPTDGKDSNTLLKNADSALNLAKSQGKN
HHHHHHHHHHHCCCEEEECCEEEEEEEEEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCE
CYVFFTEELQTVVAERLEIENRMRIAIIENQFTLMYQPKIDLYTRKPVGVEALIRWRHPE
EEEEEHHHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCEEEEECCCCCHHHHHEECCCC
RGLISPNVFIPISEETGMILAIGEWVIKSAIKTMREWKDHGVKDISMAVNISTKQFKHER
CCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHH
LISTIAENLKLYKVDPHDLEVELTESSVMENADAAVRTMQEIRKLGAKIAIDDFGTGYSS
HHHHHHCCCEEEEECCCCEEEEECHHHHHHCHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LGYLKKLPISSLKIDRSFVSEITTDKDSKTIIHAVSNLAHNLGLSVVAEGAETEEQVRLL
CCHHHHCCCCCEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
AESGVDQIQGFYFAKPMTSEDCLHFLKTELGISD
HHCCHHHHCCEEEECCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRNEPLGKNILSGLTVKSLLSEYPNSFQVLDWEGNFVSVTDRFARFLEFEPKEIVGKSIL
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHCCCHHHHHHHHHH
NFTQEDDKENTQNTFEGLGENPNIVNFENRLVTKSKEEVWIIWLLIPLTDSKIILGFDRD
HCCCCCCCCHHHHHHHCCCCCCCEEECCCCEECCCCCCEEEEEEEEECCCCEEEEEECCC
VTIQKDISFEFLLQQQKYKSIFDNLPMGIAITDEKGKIVETNKTARTYFDIQDGELLNRT
EEEECCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCEEEEEECCCCHHHHHE
LNIRKYTLIQPNGTKIYPRKSSLMRALRHKEVIRNLEIGMIKENKITWFDILATPIPIEN
ECEEEEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCC
FGLAVAFLDITQRRHAEEKIAYMAFFDQLTNLPNRNSLIDKLFPIFEEARRHGNLVGILA
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
IDLDNFKIINDSRGHDFGDKIIKLVAYRIRESIRVYDLISRQGGDEFTVVLPDLSNERDA
EECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
AVISESILDAMTHPFVIDGERIFVNISIGIALYPTDGKDSNTLLKNADSALNLAKSQGKN
HHHHHHHHHHHCCCEEEECCEEEEEEEEEEEEEECCCCCCCHHHHCCHHHHHHHHHCCCE
CYVFFTEELQTVVAERLEIENRMRIAIIENQFTLMYQPKIDLYTRKPVGVEALIRWRHPE
EEEEEHHHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCEEEEECCCCCHHHHHEECCCC
RGLISPNVFIPISEETGMILAIGEWVIKSAIKTMREWKDHGVKDISMAVNISTKQFKHER
CCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHH
LISTIAENLKLYKVDPHDLEVELTESSVMENADAAVRTMQEIRKLGAKIAIDDFGTGYSS
HHHHHHCCCEEEEECCCCEEEEECHHHHHHCHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LGYLKKLPISSLKIDRSFVSEITTDKDSKTIIHAVSNLAHNLGLSVVAEGAETEEQVRLL
CCHHHHCCCCCEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH
AESGVDQIQGFYFAKPMTSEDCLHFLKTELGISD
HHCCHHHHCCEEEECCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]