| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
Click here to switch to the map view.
The map label for this gene is pheT
Identifier: 183219730
GI number: 183219730
Start: 301050
End: 303449
Strand: Reverse
Name: pheT
Synonym: LEPBI_I0306
Alternate gene names: 183219730
Gene position: 303449-301050 (Counterclockwise)
Preceding gene: 183219731
Following gene: 183219729
Centisome position: 8.43
GC content: 38.96
Gene sequence:
>2400_bases TTGAAACTTTCAGTTGATTGGTTAAACGAATTTACCCCGCTCTCCCAGATTCCCTTCGAAAAAGTTCTGGAAAAAATTAA TACGTCAATTTGTGAAATTGATGATGTGGAAGAATTTAAATCCCACCTATCATCGGTTATCACAGTCAAAATCAAATCCC TAGAAAAACACCCGAATGCGGAAAAATTACAGACTACAATTGCGACTGATGGTTCCAAAGAATACCAAATCGTCACAGCG GCCACAAATGTAGCGGTTGGTGACATCGTTCCCTTGGCACTTCCTGGTACCAAGTTAGATGGGAAAGAAATATTAGATTC TGAATTACGTGGGGTTCGTTCCCAAGGGATGTATTGTTCGGAAAAAGAATTGGGAATGGCTTTAGAATCTTCAGGGGTTC TCATTTTGCCGAAAGACACAACCCTTGGCATTTCCGTGCGAAAGTACTTTTTATGGGAAGATACAATTCTCACCATCGAC AATAAATCCATCACACATAGACCAGACCTTTGGAACCATTTTGGATTTGCCAGAGAGCTTGCAAGCCAACTCCAAATCCC ACTCCACCATTTTCCACTCCAAGCAGATACAAAATGGGAATCAGGTAACCAAGGTTTAACGGTAGAAAAATCAGAACATG CACATGCCTATTACGTTTGTTCGATTCAAAATGTAAATATCACCGAATCCATTCCCAAAATCAAATCACGTCTTGAAAAA TGTGGAATCCGATCCATCAATAATGTGGTGGATGTATCCAACTATTTATTGTTAGAACTTGGACAACCTACCCATTTTTT TGATCGCTCCAAATTACAATCCACTTCCTTTACCGTTTCCAAATCGAAAGAAGGGGAAAGTATATCGCTTCTCGATGATA CCTCTCCCACACTTCCCAATCATATCCTTCTCATCCAAAATGGAGAAACACCAGTTGCCTTAGCAGGTGTGATGGGAGGA AAAGATTCGGCTGTATCTGAATCCACAAAAGAGATCGTGATGGAATCTGCTGTTTTCAAACGAGAAGATGTTCGTTATAC CATTCGAAAAACCAATATTCGAACAGAATCAGCTGTTCGATACGAAAAAGGTTTGGATTCTTACACTTGTTTGCCGGTGA TGAAACGGGCTGTCCAATTATTAAAAGAAAATGGAAACCCAAACGTAAAGGTATTTGAACCTCAGGGGTTTAACCATACG GAATCCAAAACAGTGACAATTGAAACCAATTTAAGTTTTTTACGTCACAAATTGGGAAAAAAGATCAGTTTACATGAAGT AACAGACATCTTACAGCGATTAGGTTTCGAAGTTACAACCAAGGATGAATCTTTATCCGTTTTAGTTCCTAAATACCGTC AAAATTATGATGTCACCATTCCAGAAGATTTAGTGGAAGAAATTGGAAGGACCATTGGGTATGCTTCGATCCGAACCGAA GCACTTTCCATGGCAGTGGAGACACCTATCCGTAACCCACTTCGTGAGTTAGAACGAAGAGTAAAACAATTTTTGGCTTT AGAAGTTGGTTTCAATGAAGTTTACAATTATTCGTTTGCTTCTCCAACAGATGCAAAACTAGAAAAAGAGTTCGAAGTCA CTTCTTTAAAGATCGCAAACGAAATGCCAGAAGAACATTCCCTACTTCGCAACAGTTTGTATCCTGGGCTTATCAAACAA ACAAAGGTAAACCAAGATCGATTTGAAAAAGTAAATCTCTTCGAATTGGGAAGAACCTATCATAAAGAAGGAAATGATGC AACTCTCGCACAAGAAAAACGTTGGATCTCACTCCTTTCTTTATCTAAGTGCAAACCAACAGACCTTTCTTCGATTGAGG ATGAATTTCTAACGGTTCGGGAAACTATCTCAGAGCTATTTTTGTTTTTAAACCTACCAAAATTTGAATGGGTAAAACTA CCACGAACACATTTCCATCCTAACGCTAGTTTGGTTCTTTTATACGATGGGAAAGAAGTGGTGGAACTAGGTATCCTCCA CACTCGGTTTGCAGATCTATATGATCTCAAACGACGTGCCATCTTATCAAAAATCGATATGGAAGTTTTAGTTCAAATTT GGGAAACCTATGGTAGGAATTCTCATTTTGTTCCACCTTCCCATTTCCCACAAGGCCAACTTGACTTATCCCTTATTATG AACGAATCTGATCCAACAGAATCCTTTGCTAACTTGGTAAAAACATTACGAATCCCGGAACTGGAATCTGTTTTTGTGCA AACGATCTTCCAAGGGGAATCGGTTGGTGAAGGTAAAAAATCAGTCACCTATCGTTTTATACTTATGTCTTATGACAAAA CCTTTACTCAGGATCGTTTCAAAGAACTTTCTGATCGTTTGGTGGAAACGGCAAAATCAAACGGATATTCTTTGCGATAA
Upstream 100 bases:
>100_bases AATGACATCCGAGGACTGCCTGCATTTTCTGAAAACAGAACTTGGAATTTCCGATTGACCCGTTTGCTTTCCCGCCGTTT TTAACAAATAAGGATTTCAC
Downstream 100 bases:
>100_bases ATTTGCTTTGACAAAACCCATTTTTTATTGGGAAATCATTCGAGTTTATGCGGATTTTATATCTCTTCATTCTGTCGGGA AGTTTGTTTTCCTGTTCCCG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS
Number of amino acids: Translated: 799; Mature: 799
Protein sequence:
>799_residues MKLSVDWLNEFTPLSQIPFEKVLEKINTSICEIDDVEEFKSHLSSVITVKIKSLEKHPNAEKLQTTIATDGSKEYQIVTA ATNVAVGDIVPLALPGTKLDGKEILDSELRGVRSQGMYCSEKELGMALESSGVLILPKDTTLGISVRKYFLWEDTILTID NKSITHRPDLWNHFGFARELASQLQIPLHHFPLQADTKWESGNQGLTVEKSEHAHAYYVCSIQNVNITESIPKIKSRLEK CGIRSINNVVDVSNYLLLELGQPTHFFDRSKLQSTSFTVSKSKEGESISLLDDTSPTLPNHILLIQNGETPVALAGVMGG KDSAVSESTKEIVMESAVFKREDVRYTIRKTNIRTESAVRYEKGLDSYTCLPVMKRAVQLLKENGNPNVKVFEPQGFNHT ESKTVTIETNLSFLRHKLGKKISLHEVTDILQRLGFEVTTKDESLSVLVPKYRQNYDVTIPEDLVEEIGRTIGYASIRTE ALSMAVETPIRNPLRELERRVKQFLALEVGFNEVYNYSFASPTDAKLEKEFEVTSLKIANEMPEEHSLLRNSLYPGLIKQ TKVNQDRFEKVNLFELGRTYHKEGNDATLAQEKRWISLLSLSKCKPTDLSSIEDEFLTVRETISELFLFLNLPKFEWVKL PRTHFHPNASLVLLYDGKEVVELGILHTRFADLYDLKRRAILSKIDMEVLVQIWETYGRNSHFVPPSHFPQGQLDLSLIM NESDPTESFANLVKTLRIPELESVFVQTIFQGESVGEGKKSVTYRFILMSYDKTFTQDRFKELSDRLVETAKSNGYSLR
Sequences:
>Translated_799_residues MKLSVDWLNEFTPLSQIPFEKVLEKINTSICEIDDVEEFKSHLSSVITVKIKSLEKHPNAEKLQTTIATDGSKEYQIVTA ATNVAVGDIVPLALPGTKLDGKEILDSELRGVRSQGMYCSEKELGMALESSGVLILPKDTTLGISVRKYFLWEDTILTID NKSITHRPDLWNHFGFARELASQLQIPLHHFPLQADTKWESGNQGLTVEKSEHAHAYYVCSIQNVNITESIPKIKSRLEK CGIRSINNVVDVSNYLLLELGQPTHFFDRSKLQSTSFTVSKSKEGESISLLDDTSPTLPNHILLIQNGETPVALAGVMGG KDSAVSESTKEIVMESAVFKREDVRYTIRKTNIRTESAVRYEKGLDSYTCLPVMKRAVQLLKENGNPNVKVFEPQGFNHT ESKTVTIETNLSFLRHKLGKKISLHEVTDILQRLGFEVTTKDESLSVLVPKYRQNYDVTIPEDLVEEIGRTIGYASIRTE ALSMAVETPIRNPLRELERRVKQFLALEVGFNEVYNYSFASPTDAKLEKEFEVTSLKIANEMPEEHSLLRNSLYPGLIKQ TKVNQDRFEKVNLFELGRTYHKEGNDATLAQEKRWISLLSLSKCKPTDLSSIEDEFLTVRETISELFLFLNLPKFEWVKL PRTHFHPNASLVLLYDGKEVVELGILHTRFADLYDLKRRAILSKIDMEVLVQIWETYGRNSHFVPPSHFPQGQLDLSLIM NESDPTESFANLVKTLRIPELESVFVQTIFQGESVGEGKKSVTYRFILMSYDKTFTQDRFKELSDRLVETAKSNGYSLR >Mature_799_residues MKLSVDWLNEFTPLSQIPFEKVLEKINTSICEIDDVEEFKSHLSSVITVKIKSLEKHPNAEKLQTTIATDGSKEYQIVTA ATNVAVGDIVPLALPGTKLDGKEILDSELRGVRSQGMYCSEKELGMALESSGVLILPKDTTLGISVRKYFLWEDTILTID NKSITHRPDLWNHFGFARELASQLQIPLHHFPLQADTKWESGNQGLTVEKSEHAHAYYVCSIQNVNITESIPKIKSRLEK CGIRSINNVVDVSNYLLLELGQPTHFFDRSKLQSTSFTVSKSKEGESISLLDDTSPTLPNHILLIQNGETPVALAGVMGG KDSAVSESTKEIVMESAVFKREDVRYTIRKTNIRTESAVRYEKGLDSYTCLPVMKRAVQLLKENGNPNVKVFEPQGFNHT ESKTVTIETNLSFLRHKLGKKISLHEVTDILQRLGFEVTTKDESLSVLVPKYRQNYDVTIPEDLVEEIGRTIGYASIRTE ALSMAVETPIRNPLRELERRVKQFLALEVGFNEVYNYSFASPTDAKLEKEFEVTSLKIANEMPEEHSLLRNSLYPGLIKQ TKVNQDRFEKVNLFELGRTYHKEGNDATLAQEKRWISLLSLSKCKPTDLSSIEDEFLTVRETISELFLFLNLPKFEWVKL PRTHFHPNASLVLLYDGKEVVELGILHTRFADLYDLKRRAILSKIDMEVLVQIWETYGRNSHFVPPSHFPQGQLDLSLIM NESDPTESFANLVKTLRIPELESVFVQTIFQGESVGEGKKSVTYRFILMSYDKTFTQDRFKELSDRLVETAKSNGYSLR
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Escherichia coli, GI1788006, Length=815, Percent_Identity=29.079754601227, Blast_Score=293, Evalue=3e-80,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYFB_LEPBA (B0SAR6)
Other databases:
- EMBL: CP000777 - RefSeq: YP_001961421.1 - ProteinModelPortal: B0SAR6 - SMR: B0SAR6 - GeneID: 6389069 - GenomeReviews: CP000777_GR - KEGG: lbf:LBF_0297 - HOGENOM: HBG527910 - OMA: ELERKCK - ProtClustDB: PRK00629 - BioCyc: LBIF355278:LBF_0297-MONOMER - GO: GO:0005737 - HAMAP: MF_00283 - InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 - Gene3D: G3DSA:3.50.40.10 - Gene3D: G3DSA:3.30.56.20 - Gene3D: G3DSA:3.30.70.380 - Gene3D: G3DSA:2.40.50.140 - SMART: SM00873 - SMART: SM00874 - SMART: SM00896 - TIGRFAMs: TIGR00472
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind; SSF56037 B3_4; SSF54991 Fdx_AntiC_bd; SSF50249 Nucleic_acid_OB; SSF46955 Putativ_DNA_bind
EC number: =6.1.1.20
Molecular weight: Translated: 90741; Mature: 90741
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS51483 B5; PS51447 FDX_ACB; PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSVDWLNEFTPLSQIPFEKVLEKINTSICEIDDVEEFKSHLSSVITVKIKSLEKHPNA CEEEHHHHHCCCCCCCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHEEEEEEEHHHCCCCH EKLQTTIATDGSKEYQIVTAATNVAVGDIVPLALPGTKLDGKEILDSELRGVRSQGMYCS HHHHHHHCCCCCCCEEEEEEECCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEC EKELGMALESSGVLILPKDTTLGISVRKYFLWEDTILTIDNKSITHRPDLWNHFGFAREL HHHHCCEEECCCEEEEECCCEECEEEEEEEEEECEEEEECCCCCCCCCCHHHHHHHHHHH ASQLQIPLHHFPLQADTKWESGNQGLTVEKSEHAHAYYVCSIQNVNITESIPKIKSRLEK HHHCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHH CGIRSINNVVDVSNYLLLELGQPTHFFDRSKLQSTSFTVSKSKEGESISLLDDTSPTLPN CCCHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCC HILLIQNGETPVALAGVMGGKDSAVSESTKEIVMESAVFKREDVRYTIRKTNIRTESAVR EEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH YEKGLDSYTCLPVMKRAVQLLKENGNPNVKVFEPQGFNHTESKTVTIETNLSFLRHKLGK HHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCHHHHHHHHCC KISLHEVTDILQRLGFEVTTKDESLSVLVPKYRQNYDVTIPEDLVEEIGRTIGYASIRTE CCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHH ALSMAVETPIRNPLRELERRVKQFLALEVGFNEVYNYSFASPTDAKLEKEFEVTSLKIAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHCCHHHHEEEHHH EMPEEHSLLRNSLYPGLIKQTKVNQDRFEKVNLFELGRTYHKEGNDATLAQEKRWISLLS CCCHHHHHHHHHCCCCHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH LSKCKPTDLSSIEDEFLTVRETISELFLFLNLPKFEWVKLPRTHFHPNASLVLLYDGKEV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCEEEEECCHHH VELGILHTRFADLYDLKRRAILSKIDMEVLVQIWETYGRNSHFVPPSHFPQGQLDLSLIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE NESDPTESFANLVKTLRIPELESVFVQTIFQGESVGEGKKSVTYRFILMSYDKTFTQDRF CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHH KELSDRLVETAKSNGYSLR HHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKLSVDWLNEFTPLSQIPFEKVLEKINTSICEIDDVEEFKSHLSSVITVKIKSLEKHPNA CEEEHHHHHCCCCCCCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHEEEEEEEHHHCCCCH EKLQTTIATDGSKEYQIVTAATNVAVGDIVPLALPGTKLDGKEILDSELRGVRSQGMYCS HHHHHHHCCCCCCCEEEEEEECCEEECCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEC EKELGMALESSGVLILPKDTTLGISVRKYFLWEDTILTIDNKSITHRPDLWNHFGFAREL HHHHCCEEECCCEEEEECCCEECEEEEEEEEEECEEEEECCCCCCCCCCHHHHHHHHHHH ASQLQIPLHHFPLQADTKWESGNQGLTVEKSEHAHAYYVCSIQNVNITESIPKIKSRLEK HHHCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHH CGIRSINNVVDVSNYLLLELGQPTHFFDRSKLQSTSFTVSKSKEGESISLLDDTSPTLPN CCCHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCC HILLIQNGETPVALAGVMGGKDSAVSESTKEIVMESAVFKREDVRYTIRKTNIRTESAVR EEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH YEKGLDSYTCLPVMKRAVQLLKENGNPNVKVFEPQGFNHTESKTVTIETNLSFLRHKLGK HHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCHHHHHHHHCC KISLHEVTDILQRLGFEVTTKDESLSVLVPKYRQNYDVTIPEDLVEEIGRTIGYASIRTE CCCHHHHHHHHHHCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHH ALSMAVETPIRNPLRELERRVKQFLALEVGFNEVYNYSFASPTDAKLEKEFEVTSLKIAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHCCHHHHEEEHHH EMPEEHSLLRNSLYPGLIKQTKVNQDRFEKVNLFELGRTYHKEGNDATLAQEKRWISLLS CCCHHHHHHHHHCCCCHHHHHCCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH LSKCKPTDLSSIEDEFLTVRETISELFLFLNLPKFEWVKLPRTHFHPNASLVLLYDGKEV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCEEEEECCHHH VELGILHTRFADLYDLKRRAILSKIDMEVLVQIWETYGRNSHFVPPSHFPQGQLDLSLIM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEE NESDPTESFANLVKTLRIPELESVFVQTIFQGESVGEGKKSVTYRFILMSYDKTFTQDRF CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHH KELSDRLVETAKSNGYSLR HHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA