| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ydaD [H]
Identifier: 18311562
GI number: 18311562
Start: 2955566
End: 2956444
Strand: Reverse
Name: ydaD [H]
Synonym: CPE2580
Alternate gene names: 18311562
Gene position: 2956444-2955566 (Counterclockwise)
Preceding gene: 18311563
Following gene: 18311561
Centisome position: 97.53
GC content: 33.56
Gene sequence:
>879_bases ATGAGCAATGAAAAATTATTCCCAACAACATTTCCAGTTCAAAATCAAAGTATTCATCCTGGAGTAGAGGATGAAATGAA TCCACTACCAATATATGATTTACCACAGTATATAAATGATGGAAAAAGACTTAAGAATAAGGTAGCCATAATAACAGGTG GAGACAGTGGAATAGGAAGAGCTGTATCCTTAGCTTATGCAAGAGAAGGGGCTAAAGTTTGTATAATATATCTATCAGAT GAAGAGGATAAGGATGCTAATAAGACTAAGGAACTTATAGAAAGTGCTGGTTCTGAGGCTTTAGTTATAAAAGGAGATAT TTCTGATATTGATTTCTGCAATTCAAGTGTAAAGAAGGTCATTGAAAAGTGGGGAAAACTTGATATATTAGTTAACAATG CGGCAGTTCAACATGATTCTAAAACTTTAGATGATATTGGACCAGAGCAAATAGAAAATACTTTTAAAATAAATGTTTTT GGAACTTTCTATATGACAAAGGCAGCAGTTAAATATATGGAATGCGGAAGTTCAATAATAAATACTACTTCTATTACAGC TTATAGAGGAAATGAGATACTTTTTGATTATTCATGTACTAAGGGTGCTTTAACTACAATGACTAGAACCTTAGCAACTA TGCTAGTTAAGAATGGAATTAGAGTTAATGCTGTAGCACCAGGACCTATATGGACACCTCTTATACCATCTTCAATGAAT AAAAAGAAAGTTTCTGAATTTGGAGTTAATTCACCTATGGGAAGAGCAGGGCAACCAGTAGAGCTTGCTGGGGCTTATGT TTTCTTAGCTTGTAATGAGGCATCATATATATCAGGTATAACAATACACGTAAATGGTGGAGAAATTATAAATGGGTAG
Upstream 100 bases:
>100_bases AAAGAAAATACAAAATAAGGCTATAAGTAAAAAATAATTGAGAATAATAAGCTTATAAATAATTAAATTTAAAATAAAGT TTTTAAGGAGGAAATTATTT
Downstream 100 bases:
>100_bases TTTCATGATTTAACGTATTAGAATATAATATACTTATGATTTAATGGAAAAATAATTTTTATAAATAAAAAGGGGGAAAC CTACAAATGAGAAAAGCATT
Product: oxidoreductase, short chain dehydrogenase/reductase family
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSNEKLFPTTFPVQNQSIHPGVEDEMNPLPIYDLPQYINDGKRLKNKVAIITGGDSGIGRAVSLAYAREGAKVCIIYLSD EEDKDANKTKELIESAGSEALVIKGDISDIDFCNSSVKKVIEKWGKLDILVNNAAVQHDSKTLDDIGPEQIENTFKINVF GTFYMTKAAVKYMECGSSIINTTSITAYRGNEILFDYSCTKGALTTMTRTLATMLVKNGIRVNAVAPGPIWTPLIPSSMN KKKVSEFGVNSPMGRAGQPVELAGAYVFLACNEASYISGITIHVNGGEIING
Sequences:
>Translated_292_residues MSNEKLFPTTFPVQNQSIHPGVEDEMNPLPIYDLPQYINDGKRLKNKVAIITGGDSGIGRAVSLAYAREGAKVCIIYLSD EEDKDANKTKELIESAGSEALVIKGDISDIDFCNSSVKKVIEKWGKLDILVNNAAVQHDSKTLDDIGPEQIENTFKINVF GTFYMTKAAVKYMECGSSIINTTSITAYRGNEILFDYSCTKGALTTMTRTLATMLVKNGIRVNAVAPGPIWTPLIPSSMN KKKVSEFGVNSPMGRAGQPVELAGAYVFLACNEASYISGITIHVNGGEIING >Mature_291_residues SNEKLFPTTFPVQNQSIHPGVEDEMNPLPIYDLPQYINDGKRLKNKVAIITGGDSGIGRAVSLAYAREGAKVCIIYLSDE EDKDANKTKELIESAGSEALVIKGDISDIDFCNSSVKKVIEKWGKLDILVNNAAVQHDSKTLDDIGPEQIENTFKINVFG TFYMTKAAVKYMECGSSIINTTSITAYRGNEILFDYSCTKGALTTMTRTLATMLVKNGIRVNAVAPGPIWTPLIPSSMNK KKVSEFGVNSPMGRAGQPVELAGAYVFLACNEASYISGITIHVNGGEIING
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=33.1877729257642, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=31.25, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.9672131147541, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=32.8, Blast_Score=107, Evalue=9e-24, Organism=Homo sapiens, GI10190704, Length=276, Percent_Identity=29.3478260869565, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=29.7619047619048, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=30.2040816326531, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=30.3501945525292, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI31542939, Length=213, Percent_Identity=28.6384976525822, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=28.4974093264249, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4503301, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28.8, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=31.0526315789474, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=30.4812834224599, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI40254986, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI142976729, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789378, Length=279, Percent_Identity=45.1612903225806, Blast_Score=235, Evalue=2e-63, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=34.8178137651822, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=29.6, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=33.469387755102, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI87082160, Length=265, Percent_Identity=31.6981132075472, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=31.3008130081301, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=29.7709923664122, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=31.7647058823529, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=26.4591439688716, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=32.1138211382114, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=26.6932270916335, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=23.2931726907631, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=24.2307692307692, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787545, Length=252, Percent_Identity=24.6031746031746, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788891, Length=243, Percent_Identity=25.5144032921811, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=35.0597609561753, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=34.3396226415094, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=33.8403041825095, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=34.0909090909091, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17536025, Length=271, Percent_Identity=31.7343173431734, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=33.8403041825095, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=32.9545454545455, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=31.6205533596838, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17555706, Length=273, Percent_Identity=31.5018315018315, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=32.6848249027237, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=33.206106870229, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=31.5985130111524, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=34.6007604562738, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=33.5907335907336, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=34.0823970037453, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.5757575757576, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=33.206106870229, Blast_Score=104, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=32.0610687022901, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=32.3076923076923, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.4176245210728, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=30.7116104868914, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=30, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=29.8449612403101, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=29.4776119402985, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=31.2, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.277566539924, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=27.0916334661355, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=29.1338582677165, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17567345, Length=209, Percent_Identity=29.1866028708134, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=30.5699481865285, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=27.710843373494, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71982365, Length=256, Percent_Identity=26.5625, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17508895, Length=212, Percent_Identity=27.3584905660377, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17564282, Length=201, Percent_Identity=29.3532338308458, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=271, Percent_Identity=26.5682656826568, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=30.6122448979592, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=34.5098039215686, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=29.8804780876494, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=32.6848249027237, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=30.3149606299213, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=28.2868525896414, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=28.6290322580645, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644337, Length=257, Percent_Identity=33.852140077821, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=28.2945736434109, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=27.7551020408163, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI116007236, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24580925, Length=218, Percent_Identity=26.605504587156, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364494, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=25, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI22024069, Length=225, Percent_Identity=30.6666666666667, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=9e-11, Organism=Drosophila melanogaster, GI24581726, Length=202, Percent_Identity=30.1980198019802, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31642; Mature: 31510
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNEKLFPTTFPVQNQSIHPGVEDEMNPLPIYDLPQYINDGKRLKNKVAIITGGDSGIGR CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCEEEEEECCCCCCCH AVSLAYAREGAKVCIIYLSDEEDKDANKTKELIESAGSEALVIKGDISDIDFCNSSVKKV HEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH IEKWGKLDILVNNAAVQHDSKTLDDIGPEQIENTFKINVFGTFYMTKAAVKYMECGSSII HHHCCCEEEEEECCEECCCCCCHHCCCHHHHCCEEEEEEEEEHHHHHHHHHHHHHCCHHH NTTSITAYRGNEILFDYSCTKGALTTMTRTLATMLVKNGIRVNAVAPGPIWTPLIPSSMN CCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC KKKVSEFGVNSPMGRAGQPVELAGAYVFLACNEASYISGITIHVNGGEIING HHHHHHHCCCCCCCCCCCCEEEECEEEEEEECCCCHHEEEEEEECCCEECCC >Mature Secondary Structure SNEKLFPTTFPVQNQSIHPGVEDEMNPLPIYDLPQYINDGKRLKNKVAIITGGDSGIGR CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHCCEEEEEECCCCCCCH AVSLAYAREGAKVCIIYLSDEEDKDANKTKELIESAGSEALVIKGDISDIDFCNSSVKKV HEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH IEKWGKLDILVNNAAVQHDSKTLDDIGPEQIENTFKINVFGTFYMTKAAVKYMECGSSII HHHCCCEEEEEECCEECCCCCCHHCCCHHHHCCEEEEEEEEEHHHHHHHHHHHHHCCHHH NTTSITAYRGNEILFDYSCTKGALTTMTRTLATMLVKNGIRVNAVAPGPIWTPLIPSSMN CCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC KKKVSEFGVNSPMGRAGQPVELAGAYVFLACNEASYISGITIHVNGGEIING HHHHHHHCCCCCCCCCCCCEEEECEEEEEEECCCCHHEEEEEEECCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]