Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18311518

Identifier: 18311518

GI number: 18311518

Start: 2905203

End: 2905835

Strand: Reverse

Name: 18311518

Synonym: CPE2536

Alternate gene names: NA

Gene position: 2905835-2905203 (Counterclockwise)

Preceding gene: 18311519

Following gene: 18311517

Centisome position: 95.86

GC content: 24.33

Gene sequence:

>633_bases
ATGGATCAAAATATCAATAAAAAATTATCAGTTGGACAATTTTTAAAATCTGTATTTAACATATTTATTAAAAATTTAGG
AGATATAGCAATAATATCTGTGCTTTTTGCACTTCCTACTATTATAGGGAGAGGAAATGCTATATTTTCAGTAATTGGTA
TATTCAGCTTAGGATTCTCATCAATAGCTATAATAAAGTTAGCTAACAATTTTATTAGAGGTGAAAAGGTATATTGGATT
GAGACTATAAAATCAGCCTTTAAAAACCCTTTATTTCCTCTAGGAGTATTCCTTATACAAAACTTTGCTGTTTCTTTAGG
CTCAAGCATATTTGCACCTTTAGGAATAGTAATATCAATTTTTTTTGTAATAGCTATGCAATGTTCTATATTTGAAAACA
TAAATGTCATAGAAAGCATAAGAAAAAGTTTTTTATTAGTAAAAAATAATTTTTTAGATATTCTTTTAAAGCAGTTTGCT
TTAGTTTTTATAATTAACTTTTTTACAATGACCTTTGCAATGTTTTTAAATCAAAGTGTTTTATCAATAATAATATTTTC
ACTAGTTTTAAATATTATTACAGCTCTTACCTTAATAGGTGGAAATTTAATATATAAAGAAGTAACGGTTTAA

Upstream 100 bases:

>100_bases
CCAAATATACAGAAAGTGTTAAATTAAAATGAACTCAAGCAAAACTTATACTAATTTTGATATGATAATTATTAATATAA
ATTTTGATTGGAGGATTTTT

Downstream 100 bases:

>100_bases
GATTTTTAAAGACTATATAAGAGTCAAATTTATTTATCTATAGATAGTTAAATTTATGGAGAGAAAAAGTTTGATTTCCT
ATATAGTTTTTTATTTTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MDQNINKKLSVGQFLKSVFNIFIKNLGDIAIISVLFALPTIIGRGNAIFSVIGIFSLGFSSIAIIKLANNFIRGEKVYWI
ETIKSAFKNPLFPLGVFLIQNFAVSLGSSIFAPLGIVISIFFVIAMQCSIFENINVIESIRKSFLLVKNNFLDILLKQFA
LVFIINFFTMTFAMFLNQSVLSIIIFSLVLNIITALTLIGGNLIYKEVTV

Sequences:

>Translated_210_residues
MDQNINKKLSVGQFLKSVFNIFIKNLGDIAIISVLFALPTIIGRGNAIFSVIGIFSLGFSSIAIIKLANNFIRGEKVYWI
ETIKSAFKNPLFPLGVFLIQNFAVSLGSSIFAPLGIVISIFFVIAMQCSIFENINVIESIRKSFLLVKNNFLDILLKQFA
LVFIINFFTMTFAMFLNQSVLSIIIFSLVLNIITALTLIGGNLIYKEVTV
>Mature_210_residues
MDQNINKKLSVGQFLKSVFNIFIKNLGDIAIISVLFALPTIIGRGNAIFSVIGIFSLGFSSIAIIKLANNFIRGEKVYWI
ETIKSAFKNPLFPLGVFLIQNFAVSLGSSIFAPLGIVISIFFVIAMQCSIFENINVIESIRKSFLLVKNNFLDILLKQFA
LVFIINFFTMTFAMFLNQSVLSIIIFSLVLNIITALTLIGGNLIYKEVTV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23348; Mature: 23348

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQNINKKLSVGQFLKSVFNIFIKNLGDIAIISVLFALPTIIGRGNAIFSVIGIFSLGFS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SIAIIKLANNFIRGEKVYWIETIKSAFKNPLFPLGVFLIQNFAVSLGSSIFAPLGIVISI
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFVIAMQCSIFENINVIESIRKSFLLVKNNFLDILLKQFALVFIINFFTMTFAMFLNQSV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIIIFSLVLNIITALTLIGGNLIYKEVTV
HHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MDQNINKKLSVGQFLKSVFNIFIKNLGDIAIISVLFALPTIIGRGNAIFSVIGIFSLGFS
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SIAIIKLANNFIRGEKVYWIETIKSAFKNPLFPLGVFLIQNFAVSLGSSIFAPLGIVISI
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFVIAMQCSIFENINVIESIRKSFLLVKNNFLDILLKQFALVFIINFFTMTFAMFLNQSV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIIIFSLVLNIITALTLIGGNLIYKEVTV
HHHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA