| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311495
Identifier: 18311495
GI number: 18311495
Start: 2877637
End: 2878476
Strand: Reverse
Name: 18311495
Synonym: CPE2513
Alternate gene names: NA
Gene position: 2878476-2877637 (Counterclockwise)
Preceding gene: 18311496
Following gene: 18311494
Centisome position: 94.95
GC content: 26.9
Gene sequence:
>840_bases GTGAAAAATAAGAAATTAATTCTAGTAATACTTTGCTTAGTTTTAGGATTAGGCATTGCTGGATGTTCAGCTAAAGATAT AAGCTCAAAATTTGTTGGGAGTAATAATAATGACTTTGAATATATAAAAGAAAATAAAGTTGATAAAATAGTTATTCAAA GTACAAGAGATTCTGGTTTTAGGTTTTTAGTAAAAGAAAAGTCAGTAATAGACAATATATACAGTATGTTATCTAAAGCT GAGGTTGTTAGCAAAAAGACAGATTTACCTCCAGATTATATTTTTGAAATCCATGTTGGTGATGAAGAAAAGAAATTCTA TTATGTAACAGGTGTAAAAAATAATGGAGAAGGTAATTTCTACGATGGAGATCACTTTTATAGAATATCTAAGAGATTAG ATAACTATTTAATGCAAAATATGCAGGCAATAAGAAAACCTAGAGCTTTTGATGAAATATACTATAATTCAATACTTGAA GTAATGAAAAAAGAAAAAGATGAACTAAACAAAGATAATGCCAAAGTTGGTATTGATATACTTGGAGATAGAGATTGTAC AAAATATATGTTATCATCAGATATTGAAGATTTTGAAAAAGATGTAAAAAAAGTAGTTCCAAATGCTTCAATAATGAACC ATAATAGAGATGACTTTGATATAATAGTTACTGTAAGAAATTATGGTTATACATCTACTATGTTTAGAACTGTAATAACT ATTGAAAACAGATTAACTCATTCAGAGAAAAAATTCTATGTAGATGGAGTTTATAAGAACTCTTGGGACATCAATGTTTA TGATAGTTGGAAAGATGTTCAAAAGGAATGGGATAGATAA
Upstream 100 bases:
>100_bases GTAGGATTATTATCAACATCTCAATTTATATCAATATTTATATTAATAGGGGGTATATTACTATATAATATAAATAAATT AAAAGGGAGAAAAGAAACAG
Downstream 100 bases:
>100_bases CAGAATGGAGGATTTTTCTTATGGGAAGTTGTGCAAGTTGTGCAAATAAAGACAAATGTAGTTCAGCTAGTAAAGATGGA GGATGTAGTTCATCAGTACC
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MKNKKLILVILCLVLGLGIAGCSAKDISSKFVGSNNNDFEYIKENKVDKIVIQSTRDSGFRFLVKEKSVIDNIYSMLSKA EVVSKKTDLPPDYIFEIHVGDEEKKFYYVTGVKNNGEGNFYDGDHFYRISKRLDNYLMQNMQAIRKPRAFDEIYYNSILE VMKKEKDELNKDNAKVGIDILGDRDCTKYMLSSDIEDFEKDVKKVVPNASIMNHNRDDFDIIVTVRNYGYTSTMFRTVIT IENRLTHSEKKFYVDGVYKNSWDINVYDSWKDVQKEWDR
Sequences:
>Translated_279_residues MKNKKLILVILCLVLGLGIAGCSAKDISSKFVGSNNNDFEYIKENKVDKIVIQSTRDSGFRFLVKEKSVIDNIYSMLSKA EVVSKKTDLPPDYIFEIHVGDEEKKFYYVTGVKNNGEGNFYDGDHFYRISKRLDNYLMQNMQAIRKPRAFDEIYYNSILE VMKKEKDELNKDNAKVGIDILGDRDCTKYMLSSDIEDFEKDVKKVVPNASIMNHNRDDFDIIVTVRNYGYTSTMFRTVIT IENRLTHSEKKFYVDGVYKNSWDINVYDSWKDVQKEWDR >Mature_279_residues MKNKKLILVILCLVLGLGIAGCSAKDISSKFVGSNNNDFEYIKENKVDKIVIQSTRDSGFRFLVKEKSVIDNIYSMLSKA EVVSKKTDLPPDYIFEIHVGDEEKKFYYVTGVKNNGEGNFYDGDHFYRISKRLDNYLMQNMQAIRKPRAFDEIYYNSILE VMKKEKDELNKDNAKVGIDILGDRDCTKYMLSSDIEDFEKDVKKVVPNASIMNHNRDDFDIIVTVRNYGYTSTMFRTVIT IENRLTHSEKKFYVDGVYKNSWDINVYDSWKDVQKEWDR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32566; Mature: 32566
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKKLILVILCLVLGLGIAGCSAKDISSKFVGSNNNDFEYIKENKVDKIVIQSTRDSGF CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCEEEEEECCCCCC RFLVKEKSVIDNIYSMLSKAEVVSKKTDLPPDYIFEIHVGDEEKKFYYVTGVKNNGEGNF EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCC YDGDHFYRISKRLDNYLMQNMQAIRKPRAFDEIYYNSILEVMKKEKDELNKDNAKVGIDI CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE LGDRDCTKYMLSSDIEDFEKDVKKVVPNASIMNHNRDDFDIIVTVRNYGYTSTMFRTVIT ECCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEECCCCHHHHHHHHHH IENRLTHSEKKFYVDGVYKNSWDINVYDSWKDVQKEWDR HHHHHCCCCCEEEEEEEECCCCEEEEECCHHHHHHHHCC >Mature Secondary Structure MKNKKLILVILCLVLGLGIAGCSAKDISSKFVGSNNNDFEYIKENKVDKIVIQSTRDSGF CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCEEEEEECCCCCC RFLVKEKSVIDNIYSMLSKAEVVSKKTDLPPDYIFEIHVGDEEKKFYYVTGVKNNGEGNF EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCC YDGDHFYRISKRLDNYLMQNMQAIRKPRAFDEIYYNSILEVMKKEKDELNKDNAKVGIDI CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE LGDRDCTKYMLSSDIEDFEKDVKKVVPNASIMNHNRDDFDIIVTVRNYGYTSTMFRTVIT ECCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEECCCCHHHHHHHHHH IENRLTHSEKKFYVDGVYKNSWDINVYDSWKDVQKEWDR HHHHHCCCCCEEEEEEEECCCCEEEEECCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA