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The map label for this gene is rbsR [H]

Identifier: 18311476

GI number: 18311476

Start: 2855996

End: 2856904

Strand: Direct

Name: rbsR [H]

Synonym: CPE2494

Alternate gene names: 18311476

Gene position: 2855996-2856904 (Clockwise)

Preceding gene: 161485639

Following gene: 18311477

Centisome position: 94.21

GC content: 27.61

Gene sequence:

>909_bases
ATGAAAGTTATAAATAAATATAACTATACTCCTAGTGCTATTGCTAGAAGTCTTTCAAAAAGTATTACTAATACTATTGG
AGTTATAGTTCCTGATATTACAAATCCATTCTTTGGATCAATAATAAAAGGAATAAGTGATGTTGCAGAAGTGCATAATC
TTAATTTGATTCTTTGTGACTCTAACGAGAGTATCGATAGGGAAATAAAGGCTATTAAAACATTAAAAGAACAAAGAATT
AGGGGAATTATAATTTGTCCAACCTCTGTTGAAAATGATTTAAATAGCGAGTACTTAAAAGCTATTACAAATTTAGGCAT
ACCAGTCATATTAGTTGATGGAAGTCTTAAATATCATAATTTTAACGGCGTTTTTGTGGACAACATTAAAGGTTCTTATG
ATGCTATCGAAGCTTTAATTAAAGCTAATCATAGAGATATAGCAATAATTACTGGTCGCATGACATCTAAACCAGCTCAG
GACAGATTATTAGGATATGAAAAAGCATTATTAATGAATAATATTCCTATAAATAATGACTTAATTTTTTATGGAAATTA
TGAAGAAGAAAGTGGATATGAATGTACTAAGAAAATCTTAGCTATGAAAAATAGACCTTCAGCCATTTTTGTATGTAATA
ATCTTATGACCTTAGGTTGCTTAAAAGCTTTAAGAGAAGCAAACCTTGAGTTATCAAAAGATATTTCATTAATTTCCTTT
GATAATATACCTATATTAGATACACTAGGTATAAATCTTAGTCACATAAATGGTCCAACTAGAGAACTTGGAGAGATTGG
TATGAATTTACTAATAGAATCTTTAAATAATGACTCTAAAAAAGAATTAAATAGTATAATAATAACTCCTGAACTTGTTT
TGAAAGGTTCAGAAAAGTTAATAAAATAA

Upstream 100 bases:

>100_bases
AAGCGGGAGTTTCTTTAGCTACAGTTTCTAGAGTTATAAATAATTCTGGATATGTTAAAGATGAAACTCGTGAATTAAAG
ATGAAACTCGTGAAAAGGTT

Downstream 100 bases:

>100_bases
TTTCAAGTTTAATTTAGAATTTTATACATTTTAAAGTAAGCGTTACCACATACTAGAAATATTCCACAATTAAAATCATT
ACTAAAATAAAATTTCATTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKVINKYNYTPSAIARSLSKSITNTIGVIVPDITNPFFGSIIKGISDVAEVHNLNLILCDSNESIDREIKAIKTLKEQRI
RGIIICPTSVENDLNSEYLKAITNLGIPVILVDGSLKYHNFNGVFVDNIKGSYDAIEALIKANHRDIAIITGRMTSKPAQ
DRLLGYEKALLMNNIPINNDLIFYGNYEEESGYECTKKILAMKNRPSAIFVCNNLMTLGCLKALREANLELSKDISLISF
DNIPILDTLGINLSHINGPTRELGEIGMNLLIESLNNDSKKELNSIIITPELVLKGSEKLIK

Sequences:

>Translated_302_residues
MKVINKYNYTPSAIARSLSKSITNTIGVIVPDITNPFFGSIIKGISDVAEVHNLNLILCDSNESIDREIKAIKTLKEQRI
RGIIICPTSVENDLNSEYLKAITNLGIPVILVDGSLKYHNFNGVFVDNIKGSYDAIEALIKANHRDIAIITGRMTSKPAQ
DRLLGYEKALLMNNIPINNDLIFYGNYEEESGYECTKKILAMKNRPSAIFVCNNLMTLGCLKALREANLELSKDISLISF
DNIPILDTLGINLSHINGPTRELGEIGMNLLIESLNNDSKKELNSIIITPELVLKGSEKLIK
>Mature_302_residues
MKVINKYNYTPSAIARSLSKSITNTIGVIVPDITNPFFGSIIKGISDVAEVHNLNLILCDSNESIDREIKAIKTLKEQRI
RGIIICPTSVENDLNSEYLKAITNLGIPVILVDGSLKYHNFNGVFVDNIKGSYDAIEALIKANHRDIAIITGRMTSKPAQ
DRLLGYEKALLMNNIPINNDLIFYGNYEEESGYECTKKILAMKNRPSAIFVCNNLMTLGCLKALREANLELSKDISLISF
DNIPILDTLGINLSHINGPTRELGEIGMNLLIESLNNDSKKELNSIIITPELVLKGSEKLIK

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=299, Percent_Identity=29.0969899665552, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1787948, Length=301, Percent_Identity=28.2392026578073, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1790369, Length=300, Percent_Identity=26.3333333333333, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1789068, Length=265, Percent_Identity=29.0566037735849, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787580, Length=307, Percent_Identity=25.4071661237785, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788474, Length=273, Percent_Identity=24.1758241758242, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789202, Length=291, Percent_Identity=24.3986254295533, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786540, Length=281, Percent_Identity=25.9786476868327, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786268, Length=295, Percent_Identity=20.3389830508475, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994940, Length=297, Percent_Identity=22.5589225589226, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787906, Length=296, Percent_Identity=21.9594594594595, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790715, Length=279, Percent_Identity=22.2222222222222, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789456, Length=271, Percent_Identity=24.3542435424354, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790192, Length=241, Percent_Identity=25.3112033195021, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33462; Mature: 33462

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVINKYNYTPSAIARSLSKSITNTIGVIVPDITNPFFGSIIKGISDVAEVHNLNLILCD
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEC
SNESIDREIKAIKTLKEQRIRGIIICPTSVENDLNSEYLKAITNLGIPVILVDGSLKYHN
CCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECEEEEEC
FNGVFVDNIKGSYDAIEALIKANHRDIAIITGRMTSKPAQDRLLGYEKALLMNNIPINND
CCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
LIFYGNYEEESGYECTKKILAMKNRPSAIFVCNNLMTLGCLKALREANLELSKDISLISF
EEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHCCEEEEEE
DNIPILDTLGINLSHINGPTRELGEIGMNLLIESLNNDSKKELNSIIITPELVLKGSEKL
CCCCEEHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHEEEECHHHEECCCHHH
IK
CC
>Mature Secondary Structure
MKVINKYNYTPSAIARSLSKSITNTIGVIVPDITNPFFGSIIKGISDVAEVHNLNLILCD
CCCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEC
SNESIDREIKAIKTLKEQRIRGIIICPTSVENDLNSEYLKAITNLGIPVILVDGSLKYHN
CCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECEEEEEC
FNGVFVDNIKGSYDAIEALIKANHRDIAIITGRMTSKPAQDRLLGYEKALLMNNIPINND
CCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
LIFYGNYEEESGYECTKKILAMKNRPSAIFVCNNLMTLGCLKALREANLELSKDISLISF
EEEEECCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHCCEEEEEE
DNIPILDTLGINLSHINGPTRELGEIGMNLLIESLNNDSKKELNSIIITPELVLKGSEKL
CCCCEEHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHEEEECHHHEECCCHHH
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]