Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is abgB [H]

Identifier: 18311437

GI number: 18311437

Start: 2800923

End: 2802092

Strand: Direct

Name: abgB [H]

Synonym: CPE2455

Alternate gene names: 18311437

Gene position: 2800923-2802092 (Clockwise)

Preceding gene: 18311427

Following gene: 18311439

Centisome position: 92.4

GC content: 30.6

Gene sequence:

>1170_bases
ATGAGACAGGAAGTTATTTCTTATTTATCTACAGAAAAAGAGGCTCTCTTTAATCTTTGTAAATTTCTGCATGATAATCC
TGAAGATAGTTACAAAGAATATGACGCTTGCAAATATATATGTAATTTCCTAAGAGATAGAGATTTTGATGTAAGAGAAA
AATTTTTAGATTTAGATACTGCTTTCTATGCTAAGAAAGGAAATGGATACCCTAAAATATGCTTTTTATGCGAATATGAT
GCTATTAAATCTAAGGGAGGACATATAACAGGTCATAATCTTCTTACTACTATATCAATTACAAGCGCCTTAGGATTAAG
CAAGGTAATTGAGAAGTCTGGTGGAACAGTAATATTAATAGGATGTCCTGGAGAATATTTAGGTGGAACTAAGTCTACTT
ATGTTAGACAAGGTATTTTTGATGATATAGATGTGGTATTAACAGCTCACCCAGATATAGTAACCTCTGAAAGTGGTACT
TCAAAGGCAATTATACCTTTAAAAGTAACTTTTAAAGGTCATGATGGATTAAGTTTCTTAGATTTTGATAGTTTTACATC
TTTGGATGGTACTATGCTAACTTTTAATGTAATAAACGCTTTATCTAAGGGCTTCTGTAAGAAAGCTAACATACACACTA
TTTTATCTCAAGGAGGCGTTACACCTCTTCTAAGACCTGTTGAATCAGAAGGTAAATTATATATAAGAGCAGAAAGTACA
AAAACTGCAAAATGTATAGAAAATAAAATAAGAAACCTTGTTGCTTGTATTTCTGACACAATGAACTTAGAAAGTTGTGT
TGAACTTTATGAACCACCTAATGAAGAGCTTTTATCTAATCAAATATTAAATAGATTATATAGTCATAATTTAAAAGAAA
ACGGAATAATAAACATAGGAAAACCAAGAGATATAGATGCTGGTCTTTCATTAGGAACTGTAAGTCACAAGGTACCTTGT
ATTCATCCTTATATAAACATAGTTGATAATGTAAATATTGACTATGGAACTAAAGAATTTGCAGATGCAACAATATCATC
CTTTGCTCAAGAACAAGCGCTTTCAGCTTCTTATGCCCTTATTTCAACAGCTTTAGATCTTATAGAAAGCGATTTTCTTC
TTTCAGAGGTTAAAGAAACCTTCAATATGTCTAAGGAAAATTTATATTAA

Upstream 100 bases:

>100_bases
TATACATAATTTAGAATGAAAAATATTTAAATAAATAAAAATTAATATTTTTTCTATTGTAGCACAAACTAATCCTATAA
ATATTTAGGAGGTTTTTTCA

Downstream 100 bases:

>100_bases
AAAAAGAGAGTCAAAAGACTCTCTTTTCTTAAATAGCTAAGTTTTTTTCTAATTTATCAACAAGTGTTTTACTTGGCTTA
AAATAGAATTTATTATATCC

Product: amidohydrolase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDTAFYAKKGNGYPKICFLCEYD
AIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILIGCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGT
SKAIIPLKVTFKGHDGLSFLDFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST
KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIGKPRDIDAGLSLGTVSHKVPC
IHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYALISTALDLIESDFLLSEVKETFNMSKENLY

Sequences:

>Translated_389_residues
MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDTAFYAKKGNGYPKICFLCEYD
AIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILIGCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGT
SKAIIPLKVTFKGHDGLSFLDFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST
KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIGKPRDIDAGLSLGTVSHKVPC
IHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYALISTALDLIESDFLLSEVKETFNMSKENLY
>Mature_389_residues
MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDTAFYAKKGNGYPKICFLCEYD
AIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILIGCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGT
SKAIIPLKVTFKGHDGLSFLDFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST
KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIGKPRDIDAGLSLGTVSHKVPC
IHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYALISTALDLIESDFLLSEVKETFNMSKENLY

Specific function: Required but not essential for aminobenzoyl-glutamate utilization. May participate in hydrolysis of aminobenzoyl- glutamate to aminobenzoate, either alone or in combination with AbgA [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI58082085, Length=396, Percent_Identity=28.030303030303, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI1787598, Length=275, Percent_Identity=28.3636363636364, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017145
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 43092; Mature: 43092

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDT
CHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AFYAKKGNGYPKICFLCEYDAIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILI
HHHEECCCCCCCEEEEECCHHHHCCCCEEECCHHEEHHHHHHHHHHHHHHHCCCCEEEEE
GCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGTSKAIIPLKVTFKGHDGLSFL
ECCHHHHCCCHHHHHHHCCCCCCEEEEECCCCEEECCCCCCEEEEEEEEEEECCCCCEEE
DFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHCCCCCCCEEEEEECCC
KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIG
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECC
KPRDIDAGLSLGTVSHKVPCIHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYAL
CCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISTALDLIESDFLLSEVKETFNMSKENLY
HHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MRQEVISYLSTEKEALFNLCKFLHDNPEDSYKEYDACKYICNFLRDRDFDVREKFLDLDT
CHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AFYAKKGNGYPKICFLCEYDAIKSKGGHITGHNLLTTISITSALGLSKVIEKSGGTVILI
HHHEECCCCCCCEEEEECCHHHHCCCCEEECCHHEEHHHHHHHHHHHHHHHCCCCEEEEE
GCPGEYLGGTKSTYVRQGIFDDIDVVLTAHPDIVTSESGTSKAIIPLKVTFKGHDGLSFL
ECCHHHHCCCHHHHHHHCCCCCCEEEEECCCCEEECCCCCCEEEEEEEEEEECCCCCEEE
DFDSFTSLDGTMLTFNVINALSKGFCKKANIHTILSQGGVTPLLRPVESEGKLYIRAEST
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHCCCCCCCEEEEEECCC
KTAKCIENKIRNLVACISDTMNLESCVELYEPPNEELLSNQILNRLYSHNLKENGIINIG
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEECC
KPRDIDAGLSLGTVSHKVPCIHPYINIVDNVNIDYGTKEFADATISSFAQEQALSASYAL
CCCCCCCCCCCCCCCCCCCEECHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ISTALDLIESDFLLSEVKETFNMSKENLY
HHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9829935 [H]