| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is fus [H]
Identifier: 18311390
GI number: 18311390
Start: 2754585
End: 2756651
Strand: Reverse
Name: fus [H]
Synonym: CPE2408
Alternate gene names: 18311390
Gene position: 2756651-2754585 (Counterclockwise)
Preceding gene: 18311391
Following gene: 18311389
Centisome position: 90.94
GC content: 37.4
Gene sequence:
>2067_bases ATGGCTAGACAATATCCGTTAGAAAAATTCCGTAACTTCGGAATAATGGCACATATAGATGCTGGTAAAACAACTACTAC TGAGCGTATTCTTTTCTATACAGGAAGAAACCACAAAATAGGGGAAACTCATGATGGAGCTTCAACTATGGACTGGATGG CTCAAGAGCAAGAAAGAGGTATAACAATAACTTCTGCTGCTACAACTTGTTTCTGGAAAGGTTATGAATTAAACATAATC GATACTCCAGGACACGTAGACTTCACAGTTGAGGTTGAAAGATCATTAAGAGTTCTTGATGGAGCTGTTACTGTTCTTGA TGCTAAGAGTGGAGTTGAACCACAAACTGAAACTGTTTGGAGACAGGCAGACAAGTACGGCGTTCCAAGAATGATATACG TAAACAAAATGGATGCTACAGGAGCAGACTACTACAACTGTATAAACACAGTTAGAGAAAGATTACAAGCTAATGCTGTT GCAATCCAAATTCCAATAGGTCAAGAAGATCAATTCCAAGGAATGGTTGATTTATTAACTAACCAAGCAATAATCTTCAA AGATGACTTAGGAAAAGACATAGAAGTAGGTGAAGTTCCAGCTGATTTAGCTGATAAAGCAGAAGAGTATAGAGCTGCTA TGATCGAAGCTATAGCTGAAACTGATGAAGAGTTAATGATGAAATACTTAGAAGGTGAAGAATTAACTCTTGAAGAATTA AAAGTTGCTTTAAGAAAAGCTACTATAAACAATGAAATAATCCCAGTTATCTGTGGATCATCATACAAAAACAAAGGTGT TCAACAAATGATAGATGGTGTTGTTGATTACTTACCATCACCATTAGATATACCTGCTGTTAAAGGTACTAACTTAGACG GTGAAGAAGAAGTTAGAGAAGCTTCAGATGACGCTCCAATGTCAGCTTTAGCATTCAAAATAGCTACTGACCCATTCGTT GGAAGATTAGCATTCACAAGAGTTTACTCAGGAGTTTTAGAGAGCGGTTCATACGTATTAAACTCAACTAAGGGTAAAAA AGAAAGAATCGGAAGACTTGTTAAGATGCACGCTAACTCAAGAGAGGAAGTTGAATCATTAGAAGCAGCTGAATTAGGAG CTGTAATAGGTCTTAAGAACACAACTACTGGAGATACTTTATGTACAGAAGCAGCTCCAATAATACTTGAAAAGATGGAA TTCCCAGAGCCAGTTATATCTATAGCTATCGAGCCAAAGACAAAAGCTGGTCAAGAAAAAATGGGTATAGCTTTATCAAA GCTTGCTGAAGAGGATCCAACTTTCAAAACTTGGACTGATCAAGAAACAGGTCAAACTATCATAGCTGGTATGGGTGAGC TTCACTTAGATATCATCGTTGATAGATTACAAAGAGAATTCAAAGTTGAGTGTAACGTAGGTGCTCCTCAAGTTGCTTAC AAAGAAACTATCAAAAAGGCTGTTGAAGCAGAAGCTAAATTTGCTAGACAATCTGGTGGTAGAGGACAATACGGTCACTG TAAGATAGAAATGATACCAACTGAAGGCGAATATGAATTCGAAAATGCTATCGTTGGAGGAGCTATTCCAAGAGAATACA TTCCAGCAGTAGATAACGGAATCAGAGAAGCTGCAGAAAGTGGTATAATAGCTGGATACCCAGTTATAAACTTCAAAATA AGATTATTCGACGGATCATACCATGATGTCGATTCATCTGAAATGGCATTCAAAATAGCTGGATCTATGGCATTCAAAAA CGCTATGGCTAAAGCTGATGCTGTATTACTTGAGCCTATAATGAAAGTTGAAATCACTGTACCAGAAGAGTACATGGGAG ACGTTATAGGAGATGTTAACTCAAGAAGAGGTAGAATGGAAGGAATGGACTCAAGAAATGGTGCACAAATCATAAGAGCA TTCATCCCACTATCAGAAATGTTTGGATACGCAACTGCATTAAGATCAAGAACTCAAGGTAGAGGAACTTATGCAATGGA ATTCGATCACTATGATGACGTTCCTAAGAGCATCCAAGAAGAAGTTGCAGGTAAAAAAAATAAATAA
Upstream 100 bases:
>100_bases TTGCTCATTACAGATATTAATAAAATGAAACTGTTTTGGCTAAAAGCCAAAACAGTTTTGTTGAATTTAAAAACACTATA CGTTGAGAGGAGGAGTCACA
Downstream 100 bases:
>100_bases TTTAAAGAAGCTTTAAAAGCTTCTTTAATATATAAATGTATATAATATTTTTAAATTAAAGGAGGAATTTGCAATGTCAA AAGCAAAATTTGAAAGAAGC
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G [H]
Number of amino acids: Translated: 688; Mature: 687
Protein sequence:
>688_residues MARQYPLEKFRNFGIMAHIDAGKTTTTERILFYTGRNHKIGETHDGASTMDWMAQEQERGITITSAATTCFWKGYELNII DTPGHVDFTVEVERSLRVLDGAVTVLDAKSGVEPQTETVWRQADKYGVPRMIYVNKMDATGADYYNCINTVRERLQANAV AIQIPIGQEDQFQGMVDLLTNQAIIFKDDLGKDIEVGEVPADLADKAEEYRAAMIEAIAETDEELMMKYLEGEELTLEEL KVALRKATINNEIIPVICGSSYKNKGVQQMIDGVVDYLPSPLDIPAVKGTNLDGEEEVREASDDAPMSALAFKIATDPFV GRLAFTRVYSGVLESGSYVLNSTKGKKERIGRLVKMHANSREEVESLEAAELGAVIGLKNTTTGDTLCTEAAPIILEKME FPEPVISIAIEPKTKAGQEKMGIALSKLAEEDPTFKTWTDQETGQTIIAGMGELHLDIIVDRLQREFKVECNVGAPQVAY KETIKKAVEAEAKFARQSGGRGQYGHCKIEMIPTEGEYEFENAIVGGAIPREYIPAVDNGIREAAESGIIAGYPVINFKI RLFDGSYHDVDSSEMAFKIAGSMAFKNAMAKADAVLLEPIMKVEITVPEEYMGDVIGDVNSRRGRMEGMDSRNGAQIIRA FIPLSEMFGYATALRSRTQGRGTYAMEFDHYDDVPKSIQEEVAGKKNK
Sequences:
>Translated_688_residues MARQYPLEKFRNFGIMAHIDAGKTTTTERILFYTGRNHKIGETHDGASTMDWMAQEQERGITITSAATTCFWKGYELNII DTPGHVDFTVEVERSLRVLDGAVTVLDAKSGVEPQTETVWRQADKYGVPRMIYVNKMDATGADYYNCINTVRERLQANAV AIQIPIGQEDQFQGMVDLLTNQAIIFKDDLGKDIEVGEVPADLADKAEEYRAAMIEAIAETDEELMMKYLEGEELTLEEL KVALRKATINNEIIPVICGSSYKNKGVQQMIDGVVDYLPSPLDIPAVKGTNLDGEEEVREASDDAPMSALAFKIATDPFV GRLAFTRVYSGVLESGSYVLNSTKGKKERIGRLVKMHANSREEVESLEAAELGAVIGLKNTTTGDTLCTEAAPIILEKME FPEPVISIAIEPKTKAGQEKMGIALSKLAEEDPTFKTWTDQETGQTIIAGMGELHLDIIVDRLQREFKVECNVGAPQVAY KETIKKAVEAEAKFARQSGGRGQYGHCKIEMIPTEGEYEFENAIVGGAIPREYIPAVDNGIREAAESGIIAGYPVINFKI RLFDGSYHDVDSSEMAFKIAGSMAFKNAMAKADAVLLEPIMKVEITVPEEYMGDVIGDVNSRRGRMEGMDSRNGAQIIRA FIPLSEMFGYATALRSRTQGRGTYAMEFDHYDDVPKSIQEEVAGKKNK >Mature_687_residues ARQYPLEKFRNFGIMAHIDAGKTTTTERILFYTGRNHKIGETHDGASTMDWMAQEQERGITITSAATTCFWKGYELNIID TPGHVDFTVEVERSLRVLDGAVTVLDAKSGVEPQTETVWRQADKYGVPRMIYVNKMDATGADYYNCINTVRERLQANAVA IQIPIGQEDQFQGMVDLLTNQAIIFKDDLGKDIEVGEVPADLADKAEEYRAAMIEAIAETDEELMMKYLEGEELTLEELK VALRKATINNEIIPVICGSSYKNKGVQQMIDGVVDYLPSPLDIPAVKGTNLDGEEEVREASDDAPMSALAFKIATDPFVG RLAFTRVYSGVLESGSYVLNSTKGKKERIGRLVKMHANSREEVESLEAAELGAVIGLKNTTTGDTLCTEAAPIILEKMEF PEPVISIAIEPKTKAGQEKMGIALSKLAEEDPTFKTWTDQETGQTIIAGMGELHLDIIVDRLQREFKVECNVGAPQVAYK ETIKKAVEAEAKFARQSGGRGQYGHCKIEMIPTEGEYEFENAIVGGAIPREYIPAVDNGIREAAESGIIAGYPVINFKIR LFDGSYHDVDSSEMAFKIAGSMAFKNAMAKADAVLLEPIMKVEITVPEEYMGDVIGDVNSRRGRMEGMDSRNGAQIIRAF IPLSEMFGYATALRSRTQGRGTYAMEFDHYDDVPKSIQEEVAGKKNK
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=695, Percent_Identity=42.8776978417266, Blast_Score=561, Evalue=1e-160, Organism=Homo sapiens, GI19923640, Length=724, Percent_Identity=38.8121546961326, Blast_Score=498, Evalue=1e-140, Organism=Homo sapiens, GI25306287, Length=719, Percent_Identity=34.9095966620306, Blast_Score=411, Evalue=1e-114, Organism=Homo sapiens, GI25306283, Length=457, Percent_Identity=42.0131291028446, Blast_Score=335, Evalue=1e-91, Organism=Homo sapiens, GI217272892, Length=797, Percent_Identity=24.3412797992472, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI217272894, Length=797, Percent_Identity=24.3412797992472, Blast_Score=130, Evalue=4e-30, Organism=Homo sapiens, GI157426893, Length=199, Percent_Identity=33.6683417085427, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI4503483, Length=146, Percent_Identity=40.4109589041096, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI94966754, Length=160, Percent_Identity=35, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI310132016, Length=119, Percent_Identity=36.9747899159664, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI310110807, Length=119, Percent_Identity=36.9747899159664, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI310123363, Length=119, Percent_Identity=36.9747899159664, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI94966752, Length=90, Percent_Identity=37.7777777777778, Blast_Score=70, Evalue=9e-12, Organism=Escherichia coli, GI1789738, Length=704, Percent_Identity=62.0738636363636, Blast_Score=884, Evalue=0.0, Organism=Escherichia coli, GI1790835, Length=483, Percent_Identity=29.1925465838509, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI48994988, Length=136, Percent_Identity=42.6470588235294, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI1788922, Length=142, Percent_Identity=41.5492957746479, Blast_Score=102, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17533571, Length=692, Percent_Identity=40.3179190751445, Blast_Score=507, Evalue=1e-144, Organism=Caenorhabditis elegans, GI17556745, Length=722, Percent_Identity=28.808864265928, Blast_Score=324, Evalue=1e-88, Organism=Caenorhabditis elegans, GI17552882, Length=787, Percent_Identity=22.3634053367217, Blast_Score=116, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17506493, Length=475, Percent_Identity=24.2105263157895, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17557151, Length=141, Percent_Identity=40.4255319148936, Blast_Score=104, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71988819, Length=134, Percent_Identity=35.0746268656716, Blast_Score=83, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71988811, Length=134, Percent_Identity=35.0746268656716, Blast_Score=82, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6323098, Length=687, Percent_Identity=42.0669577874818, Blast_Score=546, Evalue=1e-156, Organism=Saccharomyces cerevisiae, GI6322359, Length=774, Percent_Identity=32.5581395348837, Blast_Score=395, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6324707, Length=530, Percent_Identity=24.7169811320755, Blast_Score=114, Evalue=7e-26, Organism=Saccharomyces cerevisiae, GI6320593, Length=530, Percent_Identity=24.7169811320755, Blast_Score=114, Evalue=7e-26, Organism=Saccharomyces cerevisiae, GI6323320, Length=146, Percent_Identity=39.041095890411, Blast_Score=104, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6324166, Length=143, Percent_Identity=34.2657342657343, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24582462, Length=690, Percent_Identity=41.1594202898551, Blast_Score=550, Evalue=1e-156, Organism=Drosophila melanogaster, GI221458488, Length=726, Percent_Identity=32.6446280991736, Blast_Score=370, Evalue=1e-102, Organism=Drosophila melanogaster, GI78706572, Length=142, Percent_Identity=40.1408450704225, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI24585711, Length=447, Percent_Identity=24.6085011185682, Blast_Score=102, Evalue=8e-22, Organism=Drosophila melanogaster, GI24585713, Length=447, Percent_Identity=24.6085011185682, Blast_Score=102, Evalue=8e-22, Organism=Drosophila melanogaster, GI24585709, Length=447, Percent_Identity=24.6085011185682, Blast_Score=102, Evalue=8e-22, Organism=Drosophila melanogaster, GI28574573, Length=211, Percent_Identity=28.9099526066351, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI21357743, Length=141, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 75988; Mature: 75857
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQYPLEKFRNFGIMAHIDAGKTTTTERILFYTGRNHKIGETHDGASTMDWMAQEQERG CCCCCCHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC ITITSAATTCFWKGYELNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAKSGVEPQTETVW EEEEECCCEEEECCEEEEEEECCCCEEEEEEHHHHHHHHHCEEEEEECCCCCCCHHHHHH RQADKYGVPRMIYVNKMDATGADYYNCINTVRERLQANAVAIQIPIGQEDQFQGMVDLLT HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHH NQAIIFKDDLGKDIEVGEVPADLADKAEEYRAAMIEAIAETDEELMMKYLEGEELTLEEL CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH KVALRKATINNEIIPVICGSSYKNKGVQQMIDGVVDYLPSPLDIPAVKGTNLDGEEEVRE HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH ASDDAPMSALAFKIATDPFVGRLAFTRVYSGVLESGSYVLNSTKGKKERIGRLVKMHANS CCCCCCHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCC REEVESLEAAELGAVIGLKNTTTGDTLCTEAAPIILEKMEFPEPVISIAIEPKTKAGQEK HHHHHHHHHHHHCEEEECCCCCCCCHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCHHH MGIALSKLAEEDPTFKTWTDQETGQTIIAGMGELHLDIIVDRLQREFKVECNVGAPQVAY HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHEEEEECCCCCHHHH KETIKKAVEAEAKFARQSGGRGQYGHCKIEMIPTEGEYEFENAIVGGAIPREYIPAVDNG HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHCEEECCCCCHHHCCHHHHH IREAAESGIIAGYPVINFKIRLFDGSYHDVDSSEMAFKIAGSMAFKNAMAKADAVLLEPI HHHHHHCCCEECCEEEEEEEEEECCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCE MKVEITVPEEYMGDVIGDVNSRRGRMEGMDSRNGAQIIRAFIPLSEMFGYATALRSRTQG EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCC RGTYAMEFDHYDDVPKSIQEEVAGKKNK CCEEEEECCCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure ARQYPLEKFRNFGIMAHIDAGKTTTTERILFYTGRNHKIGETHDGASTMDWMAQEQERG CCCCCHHHHHCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCC ITITSAATTCFWKGYELNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAKSGVEPQTETVW EEEEECCCEEEECCEEEEEEECCCCEEEEEEHHHHHHHHHCEEEEEECCCCCCCHHHHHH RQADKYGVPRMIYVNKMDATGADYYNCINTVRERLQANAVAIQIPIGQEDQFQGMVDLLT HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHH NQAIIFKDDLGKDIEVGEVPADLADKAEEYRAAMIEAIAETDEELMMKYLEGEELTLEEL CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHH KVALRKATINNEIIPVICGSSYKNKGVQQMIDGVVDYLPSPLDIPAVKGTNLDGEEEVRE HHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH ASDDAPMSALAFKIATDPFVGRLAFTRVYSGVLESGSYVLNSTKGKKERIGRLVKMHANS CCCCCCHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCC REEVESLEAAELGAVIGLKNTTTGDTLCTEAAPIILEKMEFPEPVISIAIEPKTKAGQEK HHHHHHHHHHHHCEEEECCCCCCCCHHHHCCHHHHHHHHCCCCCEEEEEECCCCCCCHHH MGIALSKLAEEDPTFKTWTDQETGQTIIAGMGELHLDIIVDRLQREFKVECNVGAPQVAY HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHEEEEECCCCCHHHH KETIKKAVEAEAKFARQSGGRGQYGHCKIEMIPTEGEYEFENAIVGGAIPREYIPAVDNG HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHCEEECCCCCHHHCCHHHHH IREAAESGIIAGYPVINFKIRLFDGSYHDVDSSEMAFKIAGSMAFKNAMAKADAVLLEPI HHHHHHCCCEECCEEEEEEEEEECCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHCCE MKVEITVPEEYMGDVIGDVNSRRGRMEGMDSRNGAQIIRAFIPLSEMFGYATALRSRTQG EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHCCCC RGTYAMEFDHYDDVPKSIQEEVAGKKNK CCEEEEECCCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA