| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311156
Identifier: 18311156
GI number: 18311156
Start: 2493927
End: 2494889
Strand: Reverse
Name: 18311156
Synonym: CPE2174
Alternate gene names: NA
Gene position: 2494889-2493927 (Counterclockwise)
Preceding gene: 18311157
Following gene: 18311155
Centisome position: 82.3
GC content: 23.05
Gene sequence:
>963_bases GTGAGCTTATATGGCAATGATTTAAGGGTTGAGAATAGATATAATCATATATTAAAGAAATGGTATGTAAAAAGCAATGA TAGGTTTATAAATTTAATATGTGAGCCTTATCAAAAGTTGAACTTTATTGAAAGTTTAATTAGTGATTGTTTAATAAATA ATGAAAAAGTTTTGTATGTAGGTAAGAGTAGAAAAGTTTGTAAGAATGAGCAATTAAATTCTATGAATTTTGATTTTATA AATTTTAATAATATTTTTAATATAAAAAAGAATTTTGATTTAATAATATATGATGATGTAAGTTTATATTCAAATAAGAG TAGTATTGAATGCAATGAGGATTTAATGTACTTAAAACGCCTATCTAAGAAAATAGTAATATGTTCAGTAGATAAGGTAT TTAATAATATAAAGCACATAGAAATATTAAATAATCAAAGAAAAACACATTTCTTAGAGCCAAGATTAATAACAACTAGA GTTAATTTAGAAAATTCAATGCCTTATACCTTATATGATTATATTGAATGGTTTATAAGAGAAAAGAGAATCTTGGTTGT ATATGTTCCAAATAAATTTAACTTAAATAAAATTTATGAATATTATACTGAGGATTTAAATTTAGAAAATAAGGTTAAAA TAGTAAAAGAAGATAAAAAGAATTCCTTTTTAAATATAGTAAATGAAAGTAGATTTAAAAAAGAAGGGATTATTTTTATA ACAGATTCATTACATGAATATTTTGATTCTATTCCAGAATGTGATATGGTGATATATTCTTTTGAAAAAGATATTGTTGA TTACAAAAAAATAATATTTGCCTGTGGAGCTTTATGTAAAGATAAATTCACTGGAAGAGAAGTAATATTATTAAGTAATG AAGAGGGAGATAACATAGAAACTGCTAGGAGGTTAGCAAGAGGCTTTAATAAAACTTTATGGAGAGAGTCAGAGATAAGG TAG
Upstream 100 bases:
>100_bases ATACAAGGAGTATGGAGCGTTATTCCTCTTTAAATTGGAGAATAAAAGAAGTAATATCTAATGAGGTTTTTGAACAAGAT TAAATTAGGGGGATTTAAAA
Downstream 100 bases:
>100_bases ATTATTTATTTCAATGTTTTTTAGAAGCTATTTATCCAACAGAAGAAAAGTGTTATGTATGCAATACAGAAGGAGAAAAA ATAATTTGTGATAAATGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 320; Mature: 319
Protein sequence:
>320_residues MSLYGNDLRVENRYNHILKKWYVKSNDRFINLICEPYQKLNFIESLISDCLINNEKVLYVGKSRKVCKNEQLNSMNFDFI NFNNIFNIKKNFDLIIYDDVSLYSNKSSIECNEDLMYLKRLSKKIVICSVDKVFNNIKHIEILNNQRKTHFLEPRLITTR VNLENSMPYTLYDYIEWFIREKRILVVYVPNKFNLNKIYEYYTEDLNLENKVKIVKEDKKNSFLNIVNESRFKKEGIIFI TDSLHEYFDSIPECDMVIYSFEKDIVDYKKIIFACGALCKDKFTGREVILLSNEEGDNIETARRLARGFNKTLWRESEIR
Sequences:
>Translated_320_residues MSLYGNDLRVENRYNHILKKWYVKSNDRFINLICEPYQKLNFIESLISDCLINNEKVLYVGKSRKVCKNEQLNSMNFDFI NFNNIFNIKKNFDLIIYDDVSLYSNKSSIECNEDLMYLKRLSKKIVICSVDKVFNNIKHIEILNNQRKTHFLEPRLITTR VNLENSMPYTLYDYIEWFIREKRILVVYVPNKFNLNKIYEYYTEDLNLENKVKIVKEDKKNSFLNIVNESRFKKEGIIFI TDSLHEYFDSIPECDMVIYSFEKDIVDYKKIIFACGALCKDKFTGREVILLSNEEGDNIETARRLARGFNKTLWRESEIR >Mature_319_residues SLYGNDLRVENRYNHILKKWYVKSNDRFINLICEPYQKLNFIESLISDCLINNEKVLYVGKSRKVCKNEQLNSMNFDFIN FNNIFNIKKNFDLIIYDDVSLYSNKSSIECNEDLMYLKRLSKKIVICSVDKVFNNIKHIEILNNQRKTHFLEPRLITTRV NLENSMPYTLYDYIEWFIREKRILVVYVPNKFNLNKIYEYYTEDLNLENKVKIVKEDKKNSFLNIVNESRFKKEGIIFIT DSLHEYFDSIPECDMVIYSFEKDIVDYKKIIFACGALCKDKFTGREVILLSNEEGDNIETARRLARGFNKTLWRESEIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38336; Mature: 38204
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLYGNDLRVENRYNHILKKWYVKSNDRFINLICEPYQKLNFIESLISDCLINNEKVLYV CCCCCCCEEECHHHHHHHHHHEECCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEE GKSRKVCKNEQLNSMNFDFINFNNIFNIKKNFDLIIYDDVSLYSNKSSIECNEDLMYLKR CCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCEEEEECCCEECCCCCCCCCHHHHHHHH LSKKIVICSVDKVFNNIKHIEILNNQRKTHFLEPRLITTRVNLENSMPYTLYDYIEWFIR HCCEEEEEEHHHHHCCCEEEEEECCCCCCEECCCEEEEEEEECCCCCCCHHHHHHHHHHC EKRILVVYVPNKFNLNKIYEYYTEDLNLENKVKIVKEDKKNSFLNIVNESRFKKEGIIFI CCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEE TDSLHEYFDSIPECDMVIYSFEKDIVDYKKIIFACGALCKDKFTGREVILLSNEEGDNIE ECCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH TARRLARGFNKTLWRESEIR HHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SLYGNDLRVENRYNHILKKWYVKSNDRFINLICEPYQKLNFIESLISDCLINNEKVLYV CCCCCCEEECHHHHHHHHHHEECCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEE GKSRKVCKNEQLNSMNFDFINFNNIFNIKKNFDLIIYDDVSLYSNKSSIECNEDLMYLKR CCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCEEEEECCCEECCCCCCCCCHHHHHHHH LSKKIVICSVDKVFNNIKHIEILNNQRKTHFLEPRLITTRVNLENSMPYTLYDYIEWFIR HCCEEEEEEHHHHHCCCEEEEEECCCCCCEECCCEEEEEEEECCCCCCCHHHHHHHHHHC EKRILVVYVPNKFNLNKIYEYYTEDLNLENKVKIVKEDKKNSFLNIVNESRFKKEGIIFI CCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEE TDSLHEYFDSIPECDMVIYSFEKDIVDYKKIIFACGALCKDKFTGREVILLSNEEGDNIE ECCHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH TARRLARGFNKTLWRESEIR HHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA