| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is recD [H]
Identifier: 18311157
GI number: 18311157
Start: 2494907
End: 2497141
Strand: Reverse
Name: recD [H]
Synonym: CPE2175
Alternate gene names: 18311157
Gene position: 2497141-2494907 (Counterclockwise)
Preceding gene: 161485642
Following gene: 18311156
Centisome position: 82.38
GC content: 29.53
Gene sequence:
>2235_bases ATGGAAGCATTAAATGGAATAGTTGAGAGTATAGTATTTAAAAGCTCAGATACAGGATATACAGTTATAAAATTTAGAGA AAATAATATTATTCATACAGCAGTGGGAGTTTTACCACATGTAAAAGAAGGTCAAAATTTAAAAATTACAGGAAGTTGGG TTAACCATTCCCAGTTTGGAAAACAATTTAAAGTAGAAGAATGTGAAGAGATATTACCTACTTCAAAGGATGGAATAGAA AAATATTTATCTTCTGGGATAATACAGGGGATAGGACCTGTTACGGCAAAAAAAATTGTAAATAAATTTGGAGAAGATAC TCTTAATATTTTAGATAATAATATTGAGAGATTAAAAGAAATAGAAGGAATAGGTAAAAAGAAGTTAGAGACCATAATTG AGTCTTATAGAGAACAAAGAGAATTAAAAAATATAACTATATTTTTGCAAACCCATGGATTAAGTGTAAATCAATGTTTG AAGATTTATAAAAAATATGGGGCTAGTTCAGTTGATACAGTTAAAAATAATCCATATATACTTTGTGATGAAATTTCAGG AATAGGATTTAAGACTTCTGATAAGATTGCTAGAAGTTTAGGAATAGAAATTGATTCACCTTTTAGAATTCAAAGTGGTA TAAGATATGTAATAAATGAATTTTGTGCTAATGGTCATACATTTATGCCAAAGGATGAACTTATAAAGGAAGCAAGTAAT GTATTAACTGTAAGTGGAGATATAATAGAAGAAAATATTAAAAATGCAGCTTTAGATAGAAAGATAAAGTTAGAGAGGGT TAATGATAAAGAAGGTGTTTTCACAATACCTAATTATTATTGTGAGCTTGGAATAACTAATAGGATTTTAACTTTAGCTA TAAGCAATTTCCAGGATATAAGTGTAGATGTAGATCACCTAATACTTCAATTTGAAAAGAAAAATAATATAACTTTTGCA GAATCACAGAAAGACGCTATAATAAGTGCTTTTCAAAATGGTATAGAGATAATAACTGGGGGACCAGGAACAGGAAAGAC CACTATAATAAAGTGTATAATTGAAATTTTTGAAACTTGTGGTTTGAAGGTTCTTTTGGGAGCACCTACTGGAAGAGCGG CTAAAAGAATGAGTGAGTCTACAGGAAAAGAAGCTACCACAATACATAGAATGCTTGATATGGGAGTCTTTGAAAAAGAA GAAAGTGTTTTTGTAACCAATGCAGAGGAACATTCCTTAGAGGCTGATGTGGTTATAATAGATGAGGCATCAATGATTGA TATAACTTTAATGAATGCTTTACTTAAATCTATTAAGGTAGGTACTAGGCTTATAATAGTGGGAGATGTTGATCAGCTTC CATCAGTAGGAGCTGGAAATGTATTAAATGATTTTATAGAGAGTGGATTTACAAAGGTTGTACGTCTAAAGGAAATATTT AGACAAGGAAAAGAGAGTATGATTGTAGTAAATGCACATAAAATAAATAAAGGTGAGATGCCTAAGTTAAATGAAAAAGG TACTGATTTCTTCTTCATAAGAAATGATATTCAAGAGGGAATATTAAATACTATTATAGATTTAATAAATACTAGGTTGC CTAAGTTTAACTCAAATTGGGATAAATTAAAAAGTATACAGGTTTTAGTTCCTATGAAAAAGGGTGTATTAGGAGTTACA AATTTAAATGAAAGAATTCAAAATGTCTTAAACCCAAAGGCTCCATATAAAAAAGAAAAAGAATTTAGAAGTATGGTATT TAGAGAGGGAGATAAGGTTATGCAGATAAAGAATAACTACTCTCTAAAATGGACCAGAATAGCTGGAAAAGGTGAGCATG AAGGCTTGGGTGTATTTAATGGAGATATGGGATTTATAGAAAGTATAGATTTAGAAGGAAAAAAACTATCTATAATCTTT GATGATGAAAGAAGAGTTATTTATGATTTTATGTATTTAGATGAATTAGATTTAGCTTATGCAATTACAATACATAAAAG TCAAGGAAGTGAATTCCCTGTAGTAATAATACCTGCATATATGGGTGCACCATTACTTATGAATAGAAATTTATTATATA CGGGAATAACTAGGGCAAAAGAAATGGTTGTAGTAGTTGGAATACCTAAAGCATTAAAATATATGGTTGATAATACAAGG AGTATGGAGCGTTATTCCTCTTTAAATTGGAGAATAAAAGAAGTAATATCTAATGAGGTTTTTGAACAAGATTAA
Upstream 100 bases:
>100_bases ATTTGTGTAAGTCAACAAAATAAGCACTATGATTTAAATTTAATAATTGTGATATAATTAATAGTAATAACAATTCAAGA GAAACCTTTTAGGAGGTAAT
Downstream 100 bases:
>100_bases ATTAGGGGGATTTAAAAGTGAGCTTATATGGCAATGATTTAAGGGTTGAGAATAGATATAATCATATATTAAAGAAATGG TATGTAAAAAGCAATGATAG
Product: helicase, RecD/TraA family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 744; Mature: 744
Protein sequence:
>744_residues MEALNGIVESIVFKSSDTGYTVIKFRENNIIHTAVGVLPHVKEGQNLKITGSWVNHSQFGKQFKVEECEEILPTSKDGIE KYLSSGIIQGIGPVTAKKIVNKFGEDTLNILDNNIERLKEIEGIGKKKLETIIESYREQRELKNITIFLQTHGLSVNQCL KIYKKYGASSVDTVKNNPYILCDEISGIGFKTSDKIARSLGIEIDSPFRIQSGIRYVINEFCANGHTFMPKDELIKEASN VLTVSGDIIEENIKNAALDRKIKLERVNDKEGVFTIPNYYCELGITNRILTLAISNFQDISVDVDHLILQFEKKNNITFA ESQKDAIISAFQNGIEIITGGPGTGKTTIIKCIIEIFETCGLKVLLGAPTGRAAKRMSESTGKEATTIHRMLDMGVFEKE ESVFVTNAEEHSLEADVVIIDEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSVGAGNVLNDFIESGFTKVVRLKEIF RQGKESMIVVNAHKINKGEMPKLNEKGTDFFFIRNDIQEGILNTIIDLINTRLPKFNSNWDKLKSIQVLVPMKKGVLGVT NLNERIQNVLNPKAPYKKEKEFRSMVFREGDKVMQIKNNYSLKWTRIAGKGEHEGLGVFNGDMGFIESIDLEGKKLSIIF DDERRVIYDFMYLDELDLAYAITIHKSQGSEFPVVIIPAYMGAPLLMNRNLLYTGITRAKEMVVVVGIPKALKYMVDNTR SMERYSSLNWRIKEVISNEVFEQD
Sequences:
>Translated_744_residues MEALNGIVESIVFKSSDTGYTVIKFRENNIIHTAVGVLPHVKEGQNLKITGSWVNHSQFGKQFKVEECEEILPTSKDGIE KYLSSGIIQGIGPVTAKKIVNKFGEDTLNILDNNIERLKEIEGIGKKKLETIIESYREQRELKNITIFLQTHGLSVNQCL KIYKKYGASSVDTVKNNPYILCDEISGIGFKTSDKIARSLGIEIDSPFRIQSGIRYVINEFCANGHTFMPKDELIKEASN VLTVSGDIIEENIKNAALDRKIKLERVNDKEGVFTIPNYYCELGITNRILTLAISNFQDISVDVDHLILQFEKKNNITFA ESQKDAIISAFQNGIEIITGGPGTGKTTIIKCIIEIFETCGLKVLLGAPTGRAAKRMSESTGKEATTIHRMLDMGVFEKE ESVFVTNAEEHSLEADVVIIDEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSVGAGNVLNDFIESGFTKVVRLKEIF RQGKESMIVVNAHKINKGEMPKLNEKGTDFFFIRNDIQEGILNTIIDLINTRLPKFNSNWDKLKSIQVLVPMKKGVLGVT NLNERIQNVLNPKAPYKKEKEFRSMVFREGDKVMQIKNNYSLKWTRIAGKGEHEGLGVFNGDMGFIESIDLEGKKLSIIF DDERRVIYDFMYLDELDLAYAITIHKSQGSEFPVVIIPAYMGAPLLMNRNLLYTGITRAKEMVVVVGIPKALKYMVDNTR SMERYSSLNWRIKEVISNEVFEQD >Mature_744_residues MEALNGIVESIVFKSSDTGYTVIKFRENNIIHTAVGVLPHVKEGQNLKITGSWVNHSQFGKQFKVEECEEILPTSKDGIE KYLSSGIIQGIGPVTAKKIVNKFGEDTLNILDNNIERLKEIEGIGKKKLETIIESYREQRELKNITIFLQTHGLSVNQCL KIYKKYGASSVDTVKNNPYILCDEISGIGFKTSDKIARSLGIEIDSPFRIQSGIRYVINEFCANGHTFMPKDELIKEASN VLTVSGDIIEENIKNAALDRKIKLERVNDKEGVFTIPNYYCELGITNRILTLAISNFQDISVDVDHLILQFEKKNNITFA ESQKDAIISAFQNGIEIITGGPGTGKTTIIKCIIEIFETCGLKVLLGAPTGRAAKRMSESTGKEATTIHRMLDMGVFEKE ESVFVTNAEEHSLEADVVIIDEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSVGAGNVLNDFIESGFTKVVRLKEIF RQGKESMIVVNAHKINKGEMPKLNEKGTDFFFIRNDIQEGILNTIIDLINTRLPKFNSNWDKLKSIQVLVPMKKGVLGVT NLNERIQNVLNPKAPYKKEKEFRSMVFREGDKVMQIKNNYSLKWTRIAGKGEHEGLGVFNGDMGFIESIDLEGKKLSIIF DDERRVIYDFMYLDELDLAYAITIHKSQGSEFPVVIIPAYMGAPLLMNRNLLYTGITRAKEMVVVVGIPKALKYMVDNTR SMERYSSLNWRIKEVISNEVFEQD
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32455236, Length=477, Percent_Identity=24.1090146750524, Blast_Score=80, Evalue=9e-15, Organism=Escherichia coli, GI1789182, Length=452, Percent_Identity=26.7699115044248, Blast_Score=131, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 83598; Mature: 83598
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEALNGIVESIVFKSSDTGYTVIKFRENNIIHTAVGVLPHVKEGQNLKITGSWVNHSQFG CCHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHHHHCCCCCCCCCEEEEECCCCHHHHC KQFKVEECEEILPTSKDGIEKYLSSGIIQGIGPVTAKKIVNKFGEDTLNILDNNIERLKE CCCCHHHHHHHCCCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH IEGIGKKKLETIIESYREQRELKNITIFLQTHGLSVNQCLKIYKKYGASSVDTVKNNPYI HHCCCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEE LCDEISGIGFKTSDKIARSLGIEIDSPFRIQSGIRYVINEFCANGHTFMPKDELIKEASN EEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC VLTVSGDIIEENIKNAALDRKIKLERVNDKEGVFTIPNYYCELGITNRILTLAISNFQDI EEEEECHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCEEECCCCHHEEEEEECCCCCC SVDVDHLILQFEKKNNITFAESQKDAIISAFQNGIEIITGGPGTGKTTIIKCIIEIFETC CCCHHHEEEEEECCCCEEEECCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC GLKVLLGAPTGRAAKRMSESTGKEATTIHRMLDMGVFEKEESVFVTNAEEHSLEADVVII CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEE DEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSVGAGNVLNDFIESGFTKVVRLKEIF CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH RQGKESMIVVNAHKINKGEMPKLNEKGTDFFFIRNDIQEGILNTIIDLINTRLPKFNSNW HCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCH DKLKSIQVLVPMKKGVLGVTNLNERIQNVLNPKAPYKKEKEFRSMVFREGDKVMQIKNNY HHHCEEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC SLKWTRIAGKGEHEGLGVFNGDMGFIESIDLEGKKLSIIFDDERRVIYDFMYLDELDLAY CEEEEEECCCCCCCCCEEEECCCCCCEEECCCCCEEEEEEECCCEEEEEEHHHCCCCEEE AITIHKSQGSEFPVVIIPAYMGAPLLMNRNLLYTGITRAKEMVVVVGIPKALKYMVDNTR EEEEECCCCCCCCEEEEEHHCCCCEEECCCEEEEEHHCCCEEEEEEECHHHHHHHHCCCH SMERYSSLNWRIKEVISNEVFEQD HHHHHHHCCHHHHHHHHHHHCCCC >Mature Secondary Structure MEALNGIVESIVFKSSDTGYTVIKFRENNIIHTAVGVLPHVKEGQNLKITGSWVNHSQFG CCHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEHHHHCCCCCCCCCEEEEECCCCHHHHC KQFKVEECEEILPTSKDGIEKYLSSGIIQGIGPVTAKKIVNKFGEDTLNILDNNIERLKE CCCCHHHHHHHCCCCHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH IEGIGKKKLETIIESYREQRELKNITIFLQTHGLSVNQCLKIYKKYGASSVDTVKNNPYI HHCCCHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEE LCDEISGIGFKTSDKIARSLGIEIDSPFRIQSGIRYVINEFCANGHTFMPKDELIKEASN EEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC VLTVSGDIIEENIKNAALDRKIKLERVNDKEGVFTIPNYYCELGITNRILTLAISNFQDI EEEEECHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCCEEECCCCHHEEEEEECCCCCC SVDVDHLILQFEKKNNITFAESQKDAIISAFQNGIEIITGGPGTGKTTIIKCIIEIFETC CCCHHHEEEEEECCCCEEEECCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC GLKVLLGAPTGRAAKRMSESTGKEATTIHRMLDMGVFEKEESVFVTNAEEHSLEADVVII CCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCEEEE DEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSVGAGNVLNDFIESGFTKVVRLKEIF CCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH RQGKESMIVVNAHKINKGEMPKLNEKGTDFFFIRNDIQEGILNTIIDLINTRLPKFNSNW HCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCH DKLKSIQVLVPMKKGVLGVTNLNERIQNVLNPKAPYKKEKEFRSMVFREGDKVMQIKNNY HHHCEEEEEEECCCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC SLKWTRIAGKGEHEGLGVFNGDMGFIESIDLEGKKLSIIFDDERRVIYDFMYLDELDLAY CEEEEEECCCCCCCCCEEEECCCCCCEEECCCCCEEEEEEECCCEEEEEEHHHCCCCEEE AITIHKSQGSEFPVVIIPAYMGAPLLMNRNLLYTGITRAKEMVVVVGIPKALKYMVDNTR EEEEECCCCCCCCEEEEEHHCCCCEEECCCEEEEEHHCCCEEEEEEECHHHHHHHHCCCH SMERYSSLNWRIKEVISNEVFEQD HHHHHHHCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]