| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311095
Identifier: 18311095
GI number: 18311095
Start: 2423724
End: 2425544
Strand: Reverse
Name: 18311095
Synonym: CPE2113
Alternate gene names: NA
Gene position: 2425544-2423724 (Counterclockwise)
Preceding gene: 18311096
Following gene: 18311094
Centisome position: 80.01
GC content: 31.85
Gene sequence:
>1821_bases ATAGAATCAGTACAATGTCCAAACTTTTTAAGTGAAGATTCTCCAGATTATTTAGTTGAATATAGAGGAAATTTAAAAGA AGAGTTAGAAAAAATTCCTTATGCATGTGGAGACGCGATTACTGATACCTTAGGTGTTGTTTCAACACCACCACAGTATT TAAAACAACTAAGAAAAGATGTTCCATCAATTCTTTATATACAGACAAGAGTGCCTTATGTTTTACAGGAGGTATCTCCA CAAGAAACTGATAATATATCCACAATTGTAAATAATCCTTATTTAGGACTTGATGGAAGCGGAGTCATAGTTGGAATAGT TGATACGGGAATAGATTATCTTAATAAGGAATTTATGAGAGAAGATGATACCTCTAGAATACTTACTATTTGGGACCAAA AGAGTACTAAAAAACCTAATGATTCAGTTTATGTAGGGTCCATATTTACTAATGAAGACATAAATAATGCTATTAAAAGT AAGGAAGATGGAGGAAATCCATATGATATTGTTGATAGTAGAGATGAAATAGGACATGGAACTAAACTAGCTAGCATAAT AGGAGCCCGTGGATATAATAGGAATATTAAAGGTATTGCACCTAATTGTGATTTTGCTATTGTAAAACTATTAACTTCAC TTAGCTATGAAAAAGCCTTTAGAGAAAATGGAATAGAGGATGTTCCAGTTTATAATGAAGCTGAAATTATAGCTGGAATA GAATATCTTAAAAATTATGCATTTAGTCTTAAGAGACCACTAGTAATTTGTTTAGCAATAGGATGCACTGAAGCAAGTCA TGATGGAAGAGGACTTTTTTCTAGATATTTAACTACAATTGGCTCAATAAGAGGAGTTGCTGTAGTTGCTGGAGTTGGAA ATGAGGGAAGTGCACAAGGACATGCCTCTGGAGTTATAGAACTTGAAAATAGTGTTGAAAAAGTTGAATTATCAATACCG AGAGAAATAAAAAATTTTAACTTAGCTTTCTGGATTCAAAGACCTAATATAGTATCCTTAAATATAAAATCTCCTAGTGG AGAAGAATCTTCATTCATAGATGCTAAAATTTCTCTAGAGAGATCATTCAAATTTATATTAACGGATACCAGTGTTAATA TTAACTATTATGTTCCTGATACCTTTACAGGAAATGAACTTATTTATATAGATTTTAAAGATATTAAGCCTGGAATATGG ACTTTTGAGTTAAGAGGAGATTATATAACTAATGGAAGATATGATGTATGGTTAGCTCCAAGCTCTTTATTGCCTGAAAA TACAAAATTTCTTAGCCCTAATCCATTAAATACTCTTATGGTTCCATCTACTGCTAGATATATAATAAGTGTAGCCTATT ATAATAGTCAAACTCAATCTTTATTAGCAGAGTCTGGAAAAGGTTTTAATATTAATGGATGGATAAATCCAGATATAACC ACTGCAGGTAAGGATATTTTGACCATGTTTCCTGGCGATAGAGTTGGAAGAATGTCAGGGAGTTCTCCAGCAACGGCAAT AATTGTAGGGGTATGTGCCTTATTATTTCAATGGGGAATTATAAATGGAAATGATAGAACAATGAATTCTAGCAAGTTAA GAAGCTATTTAATATATGGTGCTACTAGAATTCCGGGACAAACATATCCTAATGAATATACTGGATATGGATATTTAGAT TTATATGAAATATTTAAAAATATAATAGCGGTCCCTTTAGCACCTTATAGAAGTGCTAAGGTTAATGAAGATTATACTGA GTATTATTGTGGAAGGATGTTAGTTAGCGTGCCTTCTGATTTTTATTATGGAGGGGAATAA
Upstream 100 bases:
>100_bases TTTTTATAAAGGATTAGGCAGAGAGAAAAGTGTTATTTGTAACATTATTTAAATTATAGAGTAAATTAAAATAAGAGTTA ATTTTAAGAGGTGAGGAGCC
Downstream 100 bases:
>100_bases AATGGAATTTAAGTCTTCAGCTCCAGAGAACGTATTTAATAATGAAAATTATTTAAATTATTTAGTTCAGTATCAAGGTG ATATTATAGGAGAGTTTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase S8 And S; Subtilase Family Protein; Subtilisin Like Protease; Ser-Type Protease; Germination-Specific Protease; Subtilase; Serine-Type Protease; Spore-Cortex-Lytic; Peptidase S8/S53 Subtilisin Kexin Sedolisin; Protease CspB; DNA/RNA Non-Specific Endonuclease
Number of amino acids: Translated: 606; Mature: 606
Protein sequence:
>606_residues MESVQCPNFLSEDSPDYLVEYRGNLKEELEKIPYACGDAITDTLGVVSTPPQYLKQLRKDVPSILYIQTRVPYVLQEVSP QETDNISTIVNNPYLGLDGSGVIVGIVDTGIDYLNKEFMREDDTSRILTIWDQKSTKKPNDSVYVGSIFTNEDINNAIKS KEDGGNPYDIVDSRDEIGHGTKLASIIGARGYNRNIKGIAPNCDFAIVKLLTSLSYEKAFRENGIEDVPVYNEAEIIAGI EYLKNYAFSLKRPLVICLAIGCTEASHDGRGLFSRYLTTIGSIRGVAVVAGVGNEGSAQGHASGVIELENSVEKVELSIP REIKNFNLAFWIQRPNIVSLNIKSPSGEESSFIDAKISLERSFKFILTDTSVNINYYVPDTFTGNELIYIDFKDIKPGIW TFELRGDYITNGRYDVWLAPSSLLPENTKFLSPNPLNTLMVPSTARYIISVAYYNSQTQSLLAESGKGFNINGWINPDIT TAGKDILTMFPGDRVGRMSGSSPATAIIVGVCALLFQWGIINGNDRTMNSSKLRSYLIYGATRIPGQTYPNEYTGYGYLD LYEIFKNIIAVPLAPYRSAKVNEDYTEYYCGRMLVSVPSDFYYGGE
Sequences:
>Translated_606_residues MESVQCPNFLSEDSPDYLVEYRGNLKEELEKIPYACGDAITDTLGVVSTPPQYLKQLRKDVPSILYIQTRVPYVLQEVSP QETDNISTIVNNPYLGLDGSGVIVGIVDTGIDYLNKEFMREDDTSRILTIWDQKSTKKPNDSVYVGSIFTNEDINNAIKS KEDGGNPYDIVDSRDEIGHGTKLASIIGARGYNRNIKGIAPNCDFAIVKLLTSLSYEKAFRENGIEDVPVYNEAEIIAGI EYLKNYAFSLKRPLVICLAIGCTEASHDGRGLFSRYLTTIGSIRGVAVVAGVGNEGSAQGHASGVIELENSVEKVELSIP REIKNFNLAFWIQRPNIVSLNIKSPSGEESSFIDAKISLERSFKFILTDTSVNINYYVPDTFTGNELIYIDFKDIKPGIW TFELRGDYITNGRYDVWLAPSSLLPENTKFLSPNPLNTLMVPSTARYIISVAYYNSQTQSLLAESGKGFNINGWINPDIT TAGKDILTMFPGDRVGRMSGSSPATAIIVGVCALLFQWGIINGNDRTMNSSKLRSYLIYGATRIPGQTYPNEYTGYGYLD LYEIFKNIIAVPLAPYRSAKVNEDYTEYYCGRMLVSVPSDFYYGGE >Mature_606_residues MESVQCPNFLSEDSPDYLVEYRGNLKEELEKIPYACGDAITDTLGVVSTPPQYLKQLRKDVPSILYIQTRVPYVLQEVSP QETDNISTIVNNPYLGLDGSGVIVGIVDTGIDYLNKEFMREDDTSRILTIWDQKSTKKPNDSVYVGSIFTNEDINNAIKS KEDGGNPYDIVDSRDEIGHGTKLASIIGARGYNRNIKGIAPNCDFAIVKLLTSLSYEKAFRENGIEDVPVYNEAEIIAGI EYLKNYAFSLKRPLVICLAIGCTEASHDGRGLFSRYLTTIGSIRGVAVVAGVGNEGSAQGHASGVIELENSVEKVELSIP REIKNFNLAFWIQRPNIVSLNIKSPSGEESSFIDAKISLERSFKFILTDTSVNINYYVPDTFTGNELIYIDFKDIKPGIW TFELRGDYITNGRYDVWLAPSSLLPENTKFLSPNPLNTLMVPSTARYIISVAYYNSQTQSLLAESGKGFNINGWINPDIT TAGKDILTMFPGDRVGRMSGSSPATAIIVGVCALLFQWGIINGNDRTMNSSKLRSYLIYGATRIPGQTYPNEYTGYGYLD LYEIFKNIIAVPLAPYRSAKVNEDYTEYYCGRMLVSVPSDFYYGGE
Specific function: Unknown
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67289; Mature: 67289
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESVQCPNFLSEDSPDYLVEYRGNLKEELEKIPYACGDAITDTLGVVSTPPQYLKQLRKD CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHC VPSILYIQTRVPYVLQEVSPQETDNISTIVNNPYLGLDGSGVIVGIVDTGIDYLNKEFMR CCCEEEEECCCCHHHHHCCCCCCCCCEEEECCCEECCCCCCEEEEEHHCCHHHHHHHHHC EDDTSRILTIWDQKSTKKPNDSVYVGSIFTNEDINNAIKSKEDGGNPYDIVDSRDEIGHG CCCCCEEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHCCCC TKLASIIGARGYNRNIKGIAPNCDFAIVKLLTSLSYEKAFRENGIEDVPVYNEAEIIAGI HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH EYLKNYAFSLKRPLVICLAIGCTEASHDGRGLFSRYLTTIGSIRGVAVVAGVGNEGSAQG HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC HASGVIELENSVEKVELSIPREIKNFNLAFWIQRPNIVSLNIKSPSGEESSFIDAKISLE CCCEEEEECCCCEEEEEECCHHHCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEEE RSFKFILTDTSVNINYYVPDTFTGNELIYIDFKDIKPGIWTFELRGDYITNGRYDVWLAP CCEEEEEEECEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEECCEEECCEEEEEECC SSLLPENTKFLSPNPLNTLMVPSTARYIISVAYYNSQTQSLLAESGKGFNINGWINPDIT HHCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHCCCCEEECCEECCCCC TAGKDILTMFPGDRVGRMSGSSPATAIIVGVCALLFQWGIINGNDRTMNSSKLRSYLIYG CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEEEEC ATRIPGQTYPNEYTGYGYLDLYEIFKNIIAVPLAPYRSAKVNEDYTEYYCGRMLVSVPSD CEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEECCCC FYYGGE CCCCCC >Mature Secondary Structure MESVQCPNFLSEDSPDYLVEYRGNLKEELEKIPYACGDAITDTLGVVSTPPQYLKQLRKD CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHC VPSILYIQTRVPYVLQEVSPQETDNISTIVNNPYLGLDGSGVIVGIVDTGIDYLNKEFMR CCCEEEEECCCCHHHHHCCCCCCCCCEEEECCCEECCCCCCEEEEEHHCCHHHHHHHHHC EDDTSRILTIWDQKSTKKPNDSVYVGSIFTNEDINNAIKSKEDGGNPYDIVDSRDEIGHG CCCCCEEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHCCCC TKLASIIGARGYNRNIKGIAPNCDFAIVKLLTSLSYEKAFRENGIEDVPVYNEAEIIAGI HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH EYLKNYAFSLKRPLVICLAIGCTEASHDGRGLFSRYLTTIGSIRGVAVVAGVGNEGSAQG HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC HASGVIELENSVEKVELSIPREIKNFNLAFWIQRPNIVSLNIKSPSGEESSFIDAKISLE CCCEEEEECCCCEEEEEECCHHHCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEEEEE RSFKFILTDTSVNINYYVPDTFTGNELIYIDFKDIKPGIWTFELRGDYITNGRYDVWLAP CCEEEEEEECEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEEEECCEEECCEEEEEECC SSLLPENTKFLSPNPLNTLMVPSTARYIISVAYYNSQTQSLLAESGKGFNINGWINPDIT HHCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCHHHHHHHHCCCCEEECCEECCCCC TAGKDILTMFPGDRVGRMSGSSPATAIIVGVCALLFQWGIINGNDRTMNSSKLRSYLIYG CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHEEEEC ATRIPGQTYPNEYTGYGYLDLYEIFKNIIAVPLAPYRSAKVNEDYTEYYCGRMLVSVPSD CEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEECCCC FYYGGE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA