| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is resE [H]
Identifier: 18310969
GI number: 18310969
Start: 2275823
End: 2277709
Strand: Reverse
Name: resE [H]
Synonym: CPE1987
Alternate gene names: 18310969
Gene position: 2277709-2275823 (Counterclockwise)
Preceding gene: 18310970
Following gene: 18310968
Centisome position: 75.14
GC content: 22.1
Gene sequence:
>1887_bases TTGGAGTACATAGAAAATGACTATATGTATTTGAAACTTAGTAAAATTAGAAATTTAGTTAATATTATTATATTTATAGC AATTATTTTATATACTGTATATTTTTTTAATCCACGTACAGCTCTTTATTTATCTACAATTATTGAAACTATATTAGTGT TTACTATAACATTTATTGCTACAACTGTATTTAAGTTTTCTAATAAAAAGATTTTTAAATTAATAGGTATTTATTTATTA TTAGTTGCCATATTCAAGTTTGATATACTTGTTTATTTAATAGCCTTTTGGAGCGAAAAAGAAATAATTCAATGTTTAGA TTTAAAACCAGTAGCTATTTGTACTGTTTTAGAAAGTGTATATTGCTTTATGATAATAGCATATGTAAAGTCAGTAGATT TAAATATAAAATTAATAGTTTGTTTTTTTAGCATAGTGTCATTAATCAGTATATTTTTTTATGATATAAGTGTTTTTTGG GGGATATCAACAGTCCTTCTTTTAATAATTTTATGTCTTTTAAGAAATTTTAAACTTTTTAAAAATAATTTATTAAATTA TTTAAAGTTATTTGTGCTAATAAATTTATCTATAGTAGTATTAGATATTTTATCATATAGTTTAGGTTTAGAGTCACTTA TACTATTAGGTGATATATTAAAAATATCAATCTATTTAATTATATATGTTTGGATTTCAGAAATGCTTATTATAAAACCA TATAAAACTCTACATGAAGATATAATTGATAAAAATAAAAAACTTAAAATATTAAATAAGAAAATGGAAGAGAGTAATAA TGAGTTTAAAGAATTTAAGAAAAAATTAAGAGATAATGAAATTTATTTTAGGAACTTTTTAAATAATGCACCTATGTCTA TAGCGATTTTAAATAATGATAATCATAGGATTTTTGCTGTGAATAAAAGATTTTCACATGAATTAAATTTAAAAAGTAAT AGAGAGGTAATAAATAAGAACTTATTTAAAATAATAAATATTGAAAATAAAGAGGAATTCTTAAGAACAAAAAAGGGAGA AGCTTCATTTGTTACTTCTGGAATAGAAGTTTTTTGGGAGTTAGATATTTTACTACAATCAAAGGGTTACTTAATAATAT CAATGAAAAATATAACTGAACTTAAGTTTTCAGAAAAGATAAAAGATAATTTAAGAAAAAGAACCTTATCAGAACAAATA AAAAATGATTTTTTATCAAGTATTTCTCATGACTTAAAAACTCCTATAAATGTTATATATTCATCAGTTCAAGTGCAGGA GAAATTTTATAGTAATGAAAATATTAAAAAAGTTGATTATTATAACCAAGTTAATAAGGAAAATTGTATGACCTTACTAA GGTTAGCTAACAATCTAATTGACTCATCCAAAATTGATTACGATTATTTAAAACCAAACTTTAAAATTTATAATATAGTA ACATTGATTGAAGATTCTATAGGAAATTTAGCTGAATATATAAAAGAGAAAAATTTAACTTACGTATTTGATACCAATGA AGAAGAAGTATATGTTAGGTGCGATCAAGAATTTATTCAGAGAATTATTTTAAACTTAATTTCAAATTCAATAAAGCATA CAAGGGAAGGTGGAATTGGAGTAGAGATTAAGGCAAAGAAAAGTAAAGTTATTATTAGTTTTACAGACACTGGTGAAGGC ATGGATAAAGAATTTATAGAAAAGGCTTTCTTAAGATATAGCAAGGGAAATAAAAAAGGAGTAAAAAATAAAAGTACAGG AATTGGATTATATATTGTTAAGAATTTAGTTGAATTGCAAAATGGAACTATAAATATAAATTCAATTAAGGATACAGGAA CAAATATAAGGTTGGAATTTAGTAGGGAGAAAAGTTGTGGAATATAA
Upstream 100 bases:
>100_bases TAAATTACAATTAAATACAATAATTTACAAAAATTAAATAATTTCCTCTCTTTTTTATGATAATGTATATTTATATGGTT ATATTTAAGGGGGAAGTATA
Downstream 100 bases:
>100_bases AGTAGAATATGAAAATCCTAAATTACAATATTATATATTAAGAGTAATATATATATTAATAATACTATCAGCAGTATTGT TTATAAGAAAAGAAAAATAT
Product: sensor histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MEYIENDYMYLKLSKIRNLVNIIIFIAIILYTVYFFNPRTALYLSTIIETILVFTITFIATTVFKFSNKKIFKLIGIYLL LVAIFKFDILVYLIAFWSEKEIIQCLDLKPVAICTVLESVYCFMIIAYVKSVDLNIKLIVCFFSIVSLISIFFYDISVFW GISTVLLLIILCLLRNFKLFKNNLLNYLKLFVLINLSIVVLDILSYSLGLESLILLGDILKISIYLIIYVWISEMLIIKP YKTLHEDIIDKNKKLKILNKKMEESNNEFKEFKKKLRDNEIYFRNFLNNAPMSIAILNNDNHRIFAVNKRFSHELNLKSN REVINKNLFKIINIENKEEFLRTKKGEASFVTSGIEVFWELDILLQSKGYLIISMKNITELKFSEKIKDNLRKRTLSEQI KNDFLSSISHDLKTPINVIYSSVQVQEKFYSNENIKKVDYYNQVNKENCMTLLRLANNLIDSSKIDYDYLKPNFKIYNIV TLIEDSIGNLAEYIKEKNLTYVFDTNEEEVYVRCDQEFIQRIILNLISNSIKHTREGGIGVEIKAKKSKVIISFTDTGEG MDKEFIEKAFLRYSKGNKKGVKNKSTGIGLYIVKNLVELQNGTININSIKDTGTNIRLEFSREKSCGI
Sequences:
>Translated_628_residues MEYIENDYMYLKLSKIRNLVNIIIFIAIILYTVYFFNPRTALYLSTIIETILVFTITFIATTVFKFSNKKIFKLIGIYLL LVAIFKFDILVYLIAFWSEKEIIQCLDLKPVAICTVLESVYCFMIIAYVKSVDLNIKLIVCFFSIVSLISIFFYDISVFW GISTVLLLIILCLLRNFKLFKNNLLNYLKLFVLINLSIVVLDILSYSLGLESLILLGDILKISIYLIIYVWISEMLIIKP YKTLHEDIIDKNKKLKILNKKMEESNNEFKEFKKKLRDNEIYFRNFLNNAPMSIAILNNDNHRIFAVNKRFSHELNLKSN REVINKNLFKIINIENKEEFLRTKKGEASFVTSGIEVFWELDILLQSKGYLIISMKNITELKFSEKIKDNLRKRTLSEQI KNDFLSSISHDLKTPINVIYSSVQVQEKFYSNENIKKVDYYNQVNKENCMTLLRLANNLIDSSKIDYDYLKPNFKIYNIV TLIEDSIGNLAEYIKEKNLTYVFDTNEEEVYVRCDQEFIQRIILNLISNSIKHTREGGIGVEIKAKKSKVIISFTDTGEG MDKEFIEKAFLRYSKGNKKGVKNKSTGIGLYIVKNLVELQNGTININSIKDTGTNIRLEFSREKSCGI >Mature_628_residues MEYIENDYMYLKLSKIRNLVNIIIFIAIILYTVYFFNPRTALYLSTIIETILVFTITFIATTVFKFSNKKIFKLIGIYLL LVAIFKFDILVYLIAFWSEKEIIQCLDLKPVAICTVLESVYCFMIIAYVKSVDLNIKLIVCFFSIVSLISIFFYDISVFW GISTVLLLIILCLLRNFKLFKNNLLNYLKLFVLINLSIVVLDILSYSLGLESLILLGDILKISIYLIIYVWISEMLIIKP YKTLHEDIIDKNKKLKILNKKMEESNNEFKEFKKKLRDNEIYFRNFLNNAPMSIAILNNDNHRIFAVNKRFSHELNLKSN REVINKNLFKIINIENKEEFLRTKKGEASFVTSGIEVFWELDILLQSKGYLIISMKNITELKFSEKIKDNLRKRTLSEQI KNDFLSSISHDLKTPINVIYSSVQVQEKFYSNENIKKVDYYNQVNKENCMTLLRLANNLIDSSKIDYDYLKPNFKIYNIV TLIEDSIGNLAEYIKEKNLTYVFDTNEEEVYVRCDQEFIQRIILNLISNSIKHTREGGIGVEIKAKKSKVIISFTDTGEG MDKEFIEKAFLRYSKGNKKGVKNKSTGIGLYIVKNLVELQNGTININSIKDTGTNIRLEFSREKSCGI
Specific function: Member of the two-component regulatory system resD/resE involved in the global regulation of aerobic and anaerobic respiration. Probably phosphorylates resD [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1786912, Length=241, Percent_Identity=21.5767634854772, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI145693157, Length=241, Percent_Identity=25.7261410788382, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1788393, Length=234, Percent_Identity=24.3589743589744, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788713, Length=235, Percent_Identity=23.8297872340426, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI48994928, Length=410, Percent_Identity=22.1951219512195, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1789149, Length=227, Percent_Identity=23.3480176211454, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786600, Length=405, Percent_Identity=19.7530864197531, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=23.1818181818182, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 73256; Mature: 73256
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYIENDYMYLKLSKIRNLVNIIIFIAIILYTVYFFNPRTALYLSTIIETILVFTITFIA CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TTVFKFSNKKIFKLIGIYLLLVAIFKFDILVYLIAFWSEKEIIQCLDLKPVAICTVLESV HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH YCFMIIAYVKSVDLNIKLIVCFFSIVSLISIFFYDISVFWGISTVLLLIILCLLRNFKLF HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNNLLNYLKLFVLINLSIVVLDILSYSLGLESLILLGDILKISIYLIIYVWISEMLIIKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC YKTLHEDIIDKNKKLKILNKKMEESNNEFKEFKKKLRDNEIYFRNFLNNAPMSIAILNND HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECC NHRIFAVNKRFSHELNLKSNREVINKNLFKIINIENKEEFLRTKKGEASFVTSGIEVFWE CCEEEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHEE LDILLQSKGYLIISMKNITELKFSEKIKDNLRKRTLSEQIKNDFLSSISHDLKTPINVIY EEHEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH SSVQVQEKFYSNENIKKVDYYNQVNKENCMTLLRLANNLIDSSKIDYDYLKPNFKIYNIV HHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHH TLIEDSIGNLAEYIKEKNLTYVFDTNEEEVYVRCDQEFIQRIILNLISNSIKHTREGGIG HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCE VEIKAKKSKVIISFTDTGEGMDKEFIEKAFLRYSKGNKKGVKNKSTGIGLYIVKNLVELQ EEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC NGTININSIKDTGTNIRLEFSREKSCGI CCEEEEEEECCCCCEEEEEECCCCCCCC >Mature Secondary Structure MEYIENDYMYLKLSKIRNLVNIIIFIAIILYTVYFFNPRTALYLSTIIETILVFTITFIA CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TTVFKFSNKKIFKLIGIYLLLVAIFKFDILVYLIAFWSEKEIIQCLDLKPVAICTVLESV HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH YCFMIIAYVKSVDLNIKLIVCFFSIVSLISIFFYDISVFWGISTVLLLIILCLLRNFKLF HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNNLLNYLKLFVLINLSIVVLDILSYSLGLESLILLGDILKISIYLIIYVWISEMLIIKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC YKTLHEDIIDKNKKLKILNKKMEESNNEFKEFKKKLRDNEIYFRNFLNNAPMSIAILNND HHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECC NHRIFAVNKRFSHELNLKSNREVINKNLFKIINIENKEEFLRTKKGEASFVTSGIEVFWE CCEEEEEECCCCCCCCCCCCHHHHHCCCEEEEECCCHHHHHHCCCCCHHHHHHHHHHHEE LDILLQSKGYLIISMKNITELKFSEKIKDNLRKRTLSEQIKNDFLSSISHDLKTPINVIY EEHEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH SSVQVQEKFYSNENIKKVDYYNQVNKENCMTLLRLANNLIDSSKIDYDYLKPNFKIYNIV HHHHHHHHHHCCCCCEEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHH TLIEDSIGNLAEYIKEKNLTYVFDTNEEEVYVRCDQEFIQRIILNLISNSIKHTREGGIG HHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCE VEIKAKKSKVIISFTDTGEGMDKEFIEKAFLRYSKGNKKGVKNKSTGIGLYIVKNLVELQ EEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHC NGTININSIKDTGTNIRLEFSREKSCGI CCEEEEEEECCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934829; 9384377; 8631715 [H]