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The map label for this gene is potC [H]

Identifier: 18310952

GI number: 18310952

Start: 2259047

End: 2259847

Strand: Direct

Name: potC [H]

Synonym: CPE1970

Alternate gene names: 18310952

Gene position: 2259047-2259847 (Clockwise)

Preceding gene: 18310951

Following gene: 18310953

Centisome position: 74.52

GC content: 29.71

Gene sequence:

>801_bases
ATGGTAAAAAAGTTAGGTGATTTTATTTCTAAATTTTATTTAGCCTTAGTATTTATATTTTTATATGCACCAATAGTAAC
ACTTATGATATTTTCATTTAACAAAACAAAATCTATGGCTGTTTGGGGTGGCTTTACTTTTGATTGGTATAGCTCCCTAC
TTGAAAATGATAGAATAATAGCAGCTCTTTATTATACAGTTTTAATAGCAGTAATAGCCTCTGTTGTTGCTACAGTTATA
GGAACTATAAGTGCTATAGGAATTAATAATATGAAAAAAGGTCCTAGAACCTTATTATTAAACGTAAACTATTTACCAGT
ATTAAATCCTGATATAGTTACAGGTATTTCATTAATGACTTTATTCGCTATTGGTGGAGTTTTATTTAATTTAAAACCTG
GTTTTTGGACTATGCTTTTAGCTCACATAACATTTGATATTCCTTATGTTATATTATCTGTTTTACCTAAGCTAAGACAA
TTACCTCCAAATCTAACTGATGCGGCCTTAGATTTAGGAGCAAAACCATCTTACGCTTTAAGAAAGGTAGTAATTCCTCA
AATAATACCTGGTATAGCTGCAGGATTCTTAATAGCATTTACAATGTCAATAGATGACTTTGTTATAAGTTTCTTCACTA
CAGGTCCTGGTGTTTCTAACCTTTCTATAGAAATTTATTCTATGGCTAGAAGAGGTATTTCTCCAGAAATAAATGCTCTT
TCAACATTAATGTTTATAGTTGTCTTAGCATTACTTCTTATTGCTAATAGAAAACAATCTTTAGTAAAGGAGGAACGTTA
A

Upstream 100 bases:

>100_bases
TCGGTTCTGCTTTATCAATCTTTATGATGATATTAATATTAATTTCAATGGCCTTTATGTCTAAATATGAAAAGAACGGA
AAAGAAGGAGGTAAACAGCT

Downstream 100 bases:

>100_bases
TATGAAATTAAAAAAATTTTTAGCATTAACTTGTTCAACACTTCTTTTATCATCTATTTTTCTTGGTTGTGGGCCAAAAA
AGGATGAGGAAGCTACTCAA

Product: spermidine/putrescine ABC transporter

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MVKKLGDFISKFYLALVFIFLYAPIVTLMIFSFNKTKSMAVWGGFTFDWYSSLLENDRIIAALYYTVLIAVIASVVATVI
GTISAIGINNMKKGPRTLLLNVNYLPVLNPDIVTGISLMTLFAIGGVLFNLKPGFWTMLLAHITFDIPYVILSVLPKLRQ
LPPNLTDAALDLGAKPSYALRKVVIPQIIPGIAAGFLIAFTMSIDDFVISFFTTGPGVSNLSIEIYSMARRGISPEINAL
STLMFIVVLALLLIANRKQSLVKEER

Sequences:

>Translated_266_residues
MVKKLGDFISKFYLALVFIFLYAPIVTLMIFSFNKTKSMAVWGGFTFDWYSSLLENDRIIAALYYTVLIAVIASVVATVI
GTISAIGINNMKKGPRTLLLNVNYLPVLNPDIVTGISLMTLFAIGGVLFNLKPGFWTMLLAHITFDIPYVILSVLPKLRQ
LPPNLTDAALDLGAKPSYALRKVVIPQIIPGIAAGFLIAFTMSIDDFVISFFTTGPGVSNLSIEIYSMARRGISPEINAL
STLMFIVVLALLLIANRKQSLVKEER
>Mature_266_residues
MVKKLGDFISKFYLALVFIFLYAPIVTLMIFSFNKTKSMAVWGGFTFDWYSSLLENDRIIAALYYTVLIAVIASVVATVI
GTISAIGINNMKKGPRTLLLNVNYLPVLNPDIVTGISLMTLFAIGGVLFNLKPGFWTMLLAHITFDIPYVILSVLPKLRQ
LPPNLTDAALDLGAKPSYALRKVVIPQIIPGIAAGFLIAFTMSIDDFVISFFTTGPGVSNLSIEIYSMARRGISPEINAL
STLMFIVVLALLLIANRKQSLVKEER

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=231, Percent_Identity=37.6623376623377, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787081, Length=260, Percent_Identity=36.1538461538462, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787714, Length=199, Percent_Identity=30.1507537688442, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788764, Length=174, Percent_Identity=31.6091954022989, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787713, Length=211, Percent_Identity=27.9620853080569, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29261; Mature: 29261

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]