Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310913

Identifier: 18310913

GI number: 18310913

Start: 2212756

End: 2213277

Strand: Direct

Name: 18310913

Synonym: CPE1931

Alternate gene names: NA

Gene position: 2212756-2213277 (Clockwise)

Preceding gene: 18310912

Following gene: 18310942

Centisome position: 72.99

GC content: 29.69

Gene sequence:

>522_bases
TTGGTTTTAATTAAAGAAGTTCTAGCTACCTTCATAGCTACTATAGCTTTTGGAGTATTATTTAATATTCACGGAAAGAA
TTTATTCTTTGCCGGAATAGGTGGAGCCTTAGGTTGGCTAGTTTATAAAATAGGATTATATTTTGGACTAAGTGTAATAT
TATCAATGTTCTTCTCAGCAATTGCCTTTAGTGCATATTCTGAAATATATGCAAGAATTTTAAAAACTCCAGTAACCACA
ATAGTTGTTTGTGCCTTAATACCTTTAGTTCCTGGAGGCGGTATGTATAATACTATGTACGAAGCTATAAAGGGAGATGC
TATGTCAACTTGGAATCAAGCCATAATGACAATTTCATCTTCAGGTGCATTAGCCTTAGGAGTTTTATTTGTCTCTACAA
TCACTCGTTTAATAAACAATAGAAAAAAACAATATACTCATGGATCATTAAATCCTAAAAACATATTATTATTTAAAAAA
TTAAAAAACAAAAGCAATATAGATTTTCATACAAAAAAATAG

Upstream 100 bases:

>100_bases
ACTTATAAGGGCAGCTGAGGCCTTCTTGGTAGCTATTTCTATAGCTATTGGAACTGGTATGATTATGAGTATTTGGATTT
ACTTTGGAGGTGGTATATAA

Downstream 100 bases:

>100_bases
ACCACAAAGGTGGTCTATTATTTTACAAAACTATTTAATGTTTTTATTAATTGTTCTAATCCTGCTAATTCCTCTTTATC
CTCTTCTCCTATACCCATAC

Product: hypothetical protein

Products: NA

Alternate protein names: Threonine/Serine Exporter; Integral Membrane Protein

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVLIKEVLATFIATIAFGVLFNIHGKNLFFAGIGGALGWLVYKIGLYFGLSVILSMFFSAIAFSAYSEIYARILKTPVTT
IVVCALIPLVPGGGMYNTMYEAIKGDAMSTWNQAIMTISSSGALALGVLFVSTITRLINNRKKQYTHGSLNPKNILLFKK
LKNKSNIDFHTKK

Sequences:

>Translated_173_residues
MVLIKEVLATFIATIAFGVLFNIHGKNLFFAGIGGALGWLVYKIGLYFGLSVILSMFFSAIAFSAYSEIYARILKTPVTT
IVVCALIPLVPGGGMYNTMYEAIKGDAMSTWNQAIMTISSSGALALGVLFVSTITRLINNRKKQYTHGSLNPKNILLFKK
LKNKSNIDFHTKK
>Mature_173_residues
MVLIKEVLATFIATIAFGVLFNIHGKNLFFAGIGGALGWLVYKIGLYFGLSVILSMFFSAIAFSAYSEIYARILKTPVTT
IVVCALIPLVPGGGMYNTMYEAIKGDAMSTWNQAIMTISSSGALALGVLFVSTITRLINNRKKQYTHGSLNPKNILLFKK
LKNKSNIDFHTKK

Specific function: Unknown

COG id: COG3610

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18951; Mature: 18951

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIKEVLATFIATIAFGVLFNIHGKNLFFAGIGGALGWLVYKIGLYFGLSVILSMFFSA
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFSAYSEIYARILKTPVTTIVVCALIPLVPGGGMYNTMYEAIKGDAMSTWNQAIMTISS
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
SGALALGVLFVSTITRLINNRKKQYTHGSLNPKNILLFKKLKNKSNIDFHTKK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MVLIKEVLATFIATIAFGVLFNIHGKNLFFAGIGGALGWLVYKIGLYFGLSVILSMFFSA
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAFSAYSEIYARILKTPVTTIVVCALIPLVPGGGMYNTMYEAIKGDAMSTWNQAIMTISS
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCC
SGALALGVLFVSTITRLINNRKKQYTHGSLNPKNILLFKKLKNKSNIDFHTKK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA