| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310866
Identifier: 18310866
GI number: 18310866
Start: 2163776
End: 2165131
Strand: Reverse
Name: 18310866
Synonym: CPE1884
Alternate gene names: NA
Gene position: 2165131-2163776 (Counterclockwise)
Preceding gene: 18310867
Following gene: 18310864
Centisome position: 71.42
GC content: 25.52
Gene sequence:
>1356_bases ATGGCGACTGTTACGGTAACAATAAATGGAGTTGAATATAATTTAAAAGGCCATGAAGACGGAGAATATTTAAAAAAAGT AGCTGAATACGTAGAAGAAAAAACACAAGAGATGGCAACAAAAAATAATAAATTAAGTGCACTTGGAGTTTTATCTTTAT CTGCATTAAACATAGCTGATGAATTATTTAAAGGAAACGATGAATATAATCAACTTATAGATTATTATGAAAAAGTAAAA TCTGAATTAGAAAAGTCCAAAAAAGAAATAGAAGATCTTAAAGAACTAGAAGGAGAAAGTGTTTCTTTAAAGGAAAAGCT AGATAAGATTACTTCAGAGAAAGAAGCCTTAGAAAAGAATTTAAATGAATTAAAAGATAAAAAAGAAGAGATTGAGAAAA GCAGAGAAGAACTTAATAATAAATTTAATAAGCTAAATAGTGAAAATTCTAATTTAAAAGAAGAGCTTAAGAATACAAAT AATAGAATGAATAATTCTAATAAGGAAATAGCTAATTTAAAGAAAGAAATTGAAAGATTAAAAAGTGAAAATAATAGTTT AAAATCAGCTAAGGATAAAAACTCACATGAAGTTGAAAAATTAAGTAAAGAACTTAAAGAGGTTAAATCAAATAATGCTG AGTTAAACAAAACTATAGAAATCTCAAGAAATAAAGAGAAAAACTTAAGTAATGAGATTAATAATTTGAAAAGTAAAAAT AATAATGTGGAAAAAGAGCTTAGAGATCTTAAGGAAAAAAATAATAGCTTAAGCAGTATAGTTACTGAAGCTAAGAAAAA CTTAGAACTATTAAATAAAGAGATTAATAGCTTAAAGGAAAGAAATAAGACTCAAAGAGAAGAAAATGAAAAGTTAACTT TAGAAGGAGAAAATCTAAAGATTAATTGCAAAGAAATAGGAGAAAAACTTGAAGGTTTAAATAAAGAAAATGGACAACTT AAAGAAACTTCAGAGCTTTTAAATAAAGAAAAGATTTGGATCAAAGATCAAAATAGTGGTTTAAAGAAGCAAATTTTAGA GTTAGAAGAAAATCTTCAATTAGCTTTAGAAGAAAAAGATGCTTTAGGTAAGAAGATTTCAGAGGATATGGAAGTTGAAA TGAAAGCCTTAAAGGAAGAAGCTGAAGAAGTTAAGGCTGAAATGGAGATTTTAGAAGAGGAAGCTAAAAAGTTAAAAAGA GAAAAAGAACTTTTAATGGAGAATAATAAAGAGTTAAGACGTAACTGGCAAACAGCTAAGTATAAACTTTTAGATTTAGA GCAAAAATATTTAGATTCTCAAGTTAAGCTTGCTACTTCAAAAAAATCAAATAATGTTCTTTTAAAGAAAAAATAA
Upstream 100 bases:
>100_bases CTCAATTAAGAGAGCAATAATAGTTTTAAATATGTTATGTATATGTTAAAATGTACATAACATATTTTTTATTATGGAAG TAAGAGGTGTTTAAGAAAGT
Downstream 100 bases:
>100_bases AAGTGTATTTAGAGACTGTAAGAGATTTATGTGAAAATAAATTTTCTTACAGTCTTTTTATGGTTTAATAAAAAATAAAA TTATTTTTATAGGGGATATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 451; Mature: 450
Protein sequence:
>451_residues MATVTVTINGVEYNLKGHEDGEYLKKVAEYVEEKTQEMATKNNKLSALGVLSLSALNIADELFKGNDEYNQLIDYYEKVK SELEKSKKEIEDLKELEGESVSLKEKLDKITSEKEALEKNLNELKDKKEEIEKSREELNNKFNKLNSENSNLKEELKNTN NRMNNSNKEIANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNLSNEINNLKSKN NNVEKELRDLKEKNNSLSSIVTEAKKNLELLNKEINSLKERNKTQREENEKLTLEGENLKINCKEIGEKLEGLNKENGQL KETSELLNKEKIWIKDQNSGLKKQILELEENLQLALEEKDALGKKISEDMEVEMKALKEEAEEVKAEMEILEEEAKKLKR EKELLMENNKELRRNWQTAKYKLLDLEQKYLDSQVKLATSKKSNNVLLKKK
Sequences:
>Translated_451_residues MATVTVTINGVEYNLKGHEDGEYLKKVAEYVEEKTQEMATKNNKLSALGVLSLSALNIADELFKGNDEYNQLIDYYEKVK SELEKSKKEIEDLKELEGESVSLKEKLDKITSEKEALEKNLNELKDKKEEIEKSREELNNKFNKLNSENSNLKEELKNTN NRMNNSNKEIANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNLSNEINNLKSKN NNVEKELRDLKEKNNSLSSIVTEAKKNLELLNKEINSLKERNKTQREENEKLTLEGENLKINCKEIGEKLEGLNKENGQL KETSELLNKEKIWIKDQNSGLKKQILELEENLQLALEEKDALGKKISEDMEVEMKALKEEAEEVKAEMEILEEEAKKLKR EKELLMENNKELRRNWQTAKYKLLDLEQKYLDSQVKLATSKKSNNVLLKKK >Mature_450_residues ATVTVTINGVEYNLKGHEDGEYLKKVAEYVEEKTQEMATKNNKLSALGVLSLSALNIADELFKGNDEYNQLIDYYEKVKS ELEKSKKEIEDLKELEGESVSLKEKLDKITSEKEALEKNLNELKDKKEEIEKSREELNNKFNKLNSENSNLKEELKNTNN RMNNSNKEIANLKKEIERLKSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNLSNEINNLKSKNN NVEKELRDLKEKNNSLSSIVTEAKKNLELLNKEINSLKERNKTQREENEKLTLEGENLKINCKEIGEKLEGLNKENGQLK ETSELLNKEKIWIKDQNSGLKKQILELEENLQLALEEKDALGKKISEDMEVEMKALKEEAEEVKAEMEILEEEAKKLKRE KELLMENNKELRRNWQTAKYKLLDLEQKYLDSQVKLATSKKSNNVLLKKK
Specific function: Unknown
COG id: COG3027
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52357; Mature: 52226
Theoretical pI: Translated: 5.43; Mature: 5.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVTVTINGVEYNLKGHEDGEYLKKVAEYVEEKTQEMATKNNKLSALGVLSLSALNIAD CEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ELFKGNDEYNQLIDYYEKVKSELEKSKKEIEDLKELEGESVSLKEKLDKITSEKEALEKN HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LNELKDKKEEIEKSREELNNKFNKLNSENSNLKEELKNTNNRMNNSNKEIANLKKEIERL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH KSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNLSNEINNLKSKN HHCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCHHHHHHHHHHHHHCC NNVEKELRDLKEKNNSLSSIVTEAKKNLELLNKEINSLKERNKTQREENEKLTLEGENLK CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE INCKEIGEKLEGLNKENGQLKETSELLNKEKIWIKDQNSGLKKQILELEENLQLALEEKD EEHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH ALGKKISEDMEVEMKALKEEAEEVKAEMEILEEEAKKLKREKELLMENNKELRRNWQTAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH YKLLDLEQKYLDSQVKLATSKKSNNVLLKKK HHHHHHHHHHHCHHHHHHHCCCCCCEEEECC >Mature Secondary Structure ATVTVTINGVEYNLKGHEDGEYLKKVAEYVEEKTQEMATKNNKLSALGVLSLSALNIAD EEEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ELFKGNDEYNQLIDYYEKVKSELEKSKKEIEDLKELEGESVSLKEKLDKITSEKEALEKN HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LNELKDKKEEIEKSREELNNKFNKLNSENSNLKEELKNTNNRMNNSNKEIANLKKEIERL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH KSENNSLKSAKDKNSHEVEKLSKELKEVKSNNAELNKTIEISRNKEKNLSNEINNLKSKN HHCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHEEECCCCHHHHHHHHHHHHHCC NNVEKELRDLKEKNNSLSSIVTEAKKNLELLNKEINSLKERNKTQREENEKLTLEGENLK CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE INCKEIGEKLEGLNKENGQLKETSELLNKEKIWIKDQNSGLKKQILELEENLQLALEEKD EEHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHH ALGKKISEDMEVEMKALKEEAEEVKAEMEILEEEAKKLKREKELLMENNKELRRNWQTAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH YKLLDLEQKYLDSQVKLATSKKSNNVLLKKK HHHHHHHHHHHCHHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA