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The map label for this gene is ydcP [H]

Identifier: 18310864

GI number: 18310864

Start: 2160151

End: 2162511

Strand: Reverse

Name: ydcP [H]

Synonym: CPE1882

Alternate gene names: 18310864

Gene position: 2162511-2160151 (Counterclockwise)

Preceding gene: 18310866

Following gene: 18310863

Centisome position: 71.34

GC content: 28.93

Gene sequence:

>2361_bases
ATGAATTTTATGGAAAGAATAGAGTTACTAGCACCGGCAGGAAGTATGGAAAGTTTAATTGCTGCCATAAACAGAGGTGC
TGATGCTATATATTTAGGAGGAAGCAAGTTTTCAGCAAGAGCTTATGCTTCTAACTTTGATAATGAAACAATGGAAAAGG
CTGTGGACTATGCTCATACCTATGGAGTTAAGGTTTATGTTACAGTAAATACTTTAATTAAGGAAAATGAGTTTCAAGAA
GCAGTAGATTACATAGGCGTTTTATATAAAATAGGAGTTGATGCTTTAATAATCCAAGATGTAGGATTAGCTAAAAGAAT
AAGAGAGGTATATCCAGATTTTGAATTACACGCTTCAACTCAAATGAGCATACATAATGGAGAAGGAGCCCTTTTCTTTA
GAGAAAATGGATTTTTTAGAATTGTTTTATCAAGAGAACTTACTTTAGATGAAATTAAATATATTTCAAAGGACTTAGGA
ATAGAAACTGAGATATTTGTTCATGGAGCCTTATGTGTTTGCTATTCAGGACAATGTTTAATGAGTAGCTTAATAGGAGG
AAGAAGTGGTAATAGGGGAAGATGTGCTCAAAGTTGTAGACTTCCATACACATTAATTAGAGAAAAAGATAAGAAAGAGA
CTAAAGGATTCCTTTTAAGTCCTAAGGATATTTGTACTATTGAAAATGTAGAGGACTTAATAAAAACAGGAACTAGCTCA
TTAAAGGTTGAAGGAAGAATGAAGAGACCTGAGTATGTTGCTGGAGTTATAGAATCTTATAGAGAAGCTATAGATAATTC
TTATAGAAATATTAAAAAATCTCAAGAGGGAAATAAATTTAAACTTAAAAAGTTATTTAATAGAGAAGGTTTTTCTACAG
CATACATGTATAAAAATGTTGGGAAAGATATGATGGCCTTTAAAACTCCAAGAAATACAGGAGTTTTACTTGGAGAAGTT
CTAAAAAATGGAGAAGTGCTTTTATTAGATGATCTTTCATTAAAAGATGGAATAAGAACTAATGATGATGGGTTTACTGT
AAGTAAAATACTTATGGGAAATAGAGAGGTTACTGAAGCTAAAAAGGGGGATAAGGTAAAAATATTCCCTAAAAAATATA
AAGCTAATGATAAGCTTTATAAAACTTCAGATACTAAGCTTTTAAATGAATTAAAGACCTCTTATGAAAATCCATATGAG
AGAAAAATAAACTTAAAGGCGTATATGAAATTTAAGGTTAATGAACCTATGGAACTTACTGTGGAGTACAATGGAAATTA
CTTTACAAAGACTGGTGATATGGTTCAAGTTGCAGTAAATAGACCTATGGATAAGGAAAAAGTTGAAAAGAACTTAAAGA
AATCTGGAGATATTCCTTATGAAATAAGTGAAATAGAATACGTAACTTTTGAAGATGGTTTTGCAGCAGTTTCTTCTATA
AATAATTTAAGAAGAGAAGTTTTAGAAGAGATAAGAAATTCTGAGATTAAAAAATACAAAAGAGTTATAGAAAAACAAAA
TAATATAGAACTTAATGAAAAGAAGGGTGAAATGCCAGAGGTTTTAGTTGTTGTAAATACTAAGGAACAATTAAGAGCTT
CAATAGATTGTGGAATCAAAAATATTGCTTTAGATATCTTTGGAAAAAATCAAGGGCAACTTAATAAGAATGCTATAAAA
GAATTCAAAGTTGAAGGAATTAATCTTTATATAAAAGCACCTACAATAATAAAAGAAGAGTTTGAAACAATAAGTAATAT
AATAGAAGAGAATCTTAACTTAATAAAAGGTTTAGTTACAGCTAATACTGGAATAATAAATAGATTTAAGGATAAAACAA
ATATTATAGGTGATTATAAACTTAATATATTTAATTCTTATGGTATGAAGTTTTATAATGAACATATGATGGGAAGCTGT
TTAAGTTTAGAATTAAATAAAAAAGAGTTAAATAAAATGCTTAAGAAGTATTCTAAGGGAGCTCAAATATTTGTTTATGG
AAGACCAGAGGTTATGGTTAGTGAATACTGTCCAATAGGAAGTACCTTTGGTGGAAAATGTACTTCAAAAAATTGTGATA
ATCAATGTGTAAGTAGTACATTTACTTTAAGAGATAGAATGAATCAAGATTTTGTTATAAGAACTGATATATTCTGTAGA
TCACACATATACAATACAGTACCTGTTAACTTAATTCAGGAAATTGATGAAATAAAATCTTTAGGAGTAAATTCTTTAAG
ATTAGACTTTGTAGATGAAAATTATGAAGAGGTTAGACAGGTAATTGAAGCTCTAAATAAGGAAGAAGCTTTAAGATTAA
AGGATTATACTAAAGGTCACTTTAAAAGAGGCGTTGAGTAA

Upstream 100 bases:

>100_bases
AAGACAAATAATGAAATGTAGAATTGTATTGTGTAATTGTGTATAATACAAAGTATTGAGTAAATTAACTAAGGAAAGAC
CTAGTTGAATTTTAGGAGAG

Downstream 100 bases:

>100_bases
AGGGGATTAAAGTATGAACGATAGAGTTTTAAGAGTTTTAGAATTTAATAAAATTAAAGAATTGGTTAAGGGATATGCCA
TTACAAAATCAGCTAAGGAG

Product: peptidase, U32 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 786

Protein sequence:

>786_residues
MNFMERIELLAPAGSMESLIAAINRGADAIYLGGSKFSARAYASNFDNETMEKAVDYAHTYGVKVYVTVNTLIKENEFQE
AVDYIGVLYKIGVDALIIQDVGLAKRIREVYPDFELHASTQMSIHNGEGALFFRENGFFRIVLSRELTLDEIKYISKDLG
IETEIFVHGALCVCYSGQCLMSSLIGGRSGNRGRCAQSCRLPYTLIREKDKKETKGFLLSPKDICTIENVEDLIKTGTSS
LKVEGRMKRPEYVAGVIESYREAIDNSYRNIKKSQEGNKFKLKKLFNREGFSTAYMYKNVGKDMMAFKTPRNTGVLLGEV
LKNGEVLLLDDLSLKDGIRTNDDGFTVSKILMGNREVTEAKKGDKVKIFPKKYKANDKLYKTSDTKLLNELKTSYENPYE
RKINLKAYMKFKVNEPMELTVEYNGNYFTKTGDMVQVAVNRPMDKEKVEKNLKKSGDIPYEISEIEYVTFEDGFAAVSSI
NNLRREVLEEIRNSEIKKYKRVIEKQNNIELNEKKGEMPEVLVVVNTKEQLRASIDCGIKNIALDIFGKNQGQLNKNAIK
EFKVEGINLYIKAPTIIKEEFETISNIIEENLNLIKGLVTANTGIINRFKDKTNIIGDYKLNIFNSYGMKFYNEHMMGSC
LSLELNKKELNKMLKKYSKGAQIFVYGRPEVMVSEYCPIGSTFGGKCTSKNCDNQCVSSTFTLRDRMNQDFVIRTDIFCR
SHIYNTVPVNLIQEIDEIKSLGVNSLRLDFVDENYEEVRQVIEALNKEEALRLKDYTKGHFKRGVE

Sequences:

>Translated_786_residues
MNFMERIELLAPAGSMESLIAAINRGADAIYLGGSKFSARAYASNFDNETMEKAVDYAHTYGVKVYVTVNTLIKENEFQE
AVDYIGVLYKIGVDALIIQDVGLAKRIREVYPDFELHASTQMSIHNGEGALFFRENGFFRIVLSRELTLDEIKYISKDLG
IETEIFVHGALCVCYSGQCLMSSLIGGRSGNRGRCAQSCRLPYTLIREKDKKETKGFLLSPKDICTIENVEDLIKTGTSS
LKVEGRMKRPEYVAGVIESYREAIDNSYRNIKKSQEGNKFKLKKLFNREGFSTAYMYKNVGKDMMAFKTPRNTGVLLGEV
LKNGEVLLLDDLSLKDGIRTNDDGFTVSKILMGNREVTEAKKGDKVKIFPKKYKANDKLYKTSDTKLLNELKTSYENPYE
RKINLKAYMKFKVNEPMELTVEYNGNYFTKTGDMVQVAVNRPMDKEKVEKNLKKSGDIPYEISEIEYVTFEDGFAAVSSI
NNLRREVLEEIRNSEIKKYKRVIEKQNNIELNEKKGEMPEVLVVVNTKEQLRASIDCGIKNIALDIFGKNQGQLNKNAIK
EFKVEGINLYIKAPTIIKEEFETISNIIEENLNLIKGLVTANTGIINRFKDKTNIIGDYKLNIFNSYGMKFYNEHMMGSC
LSLELNKKELNKMLKKYSKGAQIFVYGRPEVMVSEYCPIGSTFGGKCTSKNCDNQCVSSTFTLRDRMNQDFVIRTDIFCR
SHIYNTVPVNLIQEIDEIKSLGVNSLRLDFVDENYEEVRQVIEALNKEEALRLKDYTKGHFKRGVE
>Mature_786_residues
MNFMERIELLAPAGSMESLIAAINRGADAIYLGGSKFSARAYASNFDNETMEKAVDYAHTYGVKVYVTVNTLIKENEFQE
AVDYIGVLYKIGVDALIIQDVGLAKRIREVYPDFELHASTQMSIHNGEGALFFRENGFFRIVLSRELTLDEIKYISKDLG
IETEIFVHGALCVCYSGQCLMSSLIGGRSGNRGRCAQSCRLPYTLIREKDKKETKGFLLSPKDICTIENVEDLIKTGTSS
LKVEGRMKRPEYVAGVIESYREAIDNSYRNIKKSQEGNKFKLKKLFNREGFSTAYMYKNVGKDMMAFKTPRNTGVLLGEV
LKNGEVLLLDDLSLKDGIRTNDDGFTVSKILMGNREVTEAKKGDKVKIFPKKYKANDKLYKTSDTKLLNELKTSYENPYE
RKINLKAYMKFKVNEPMELTVEYNGNYFTKTGDMVQVAVNRPMDKEKVEKNLKKSGDIPYEISEIEYVTFEDGFAAVSSI
NNLRREVLEEIRNSEIKKYKRVIEKQNNIELNEKKGEMPEVLVVVNTKEQLRASIDCGIKNIALDIFGKNQGQLNKNAIK
EFKVEGINLYIKAPTIIKEEFETISNIIEENLNLIKGLVTANTGIINRFKDKTNIIGDYKLNIFNSYGMKFYNEHMMGSC
LSLELNKKELNKMLKKYSKGAQIFVYGRPEVMVSEYCPIGSTFGGKCTSKNCDNQCVSSTFTLRDRMNQDFVIRTDIFCR
SHIYNTVPVNLIQEIDEIKSLGVNSLRLDFVDENYEEVRQVIEALNKEEALRLKDYTKGHFKRGVE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=523, Percent_Identity=34.7992351816444, Blast_Score=239, Evalue=5e-64,
Organism=Escherichia coli, GI1788397, Length=312, Percent_Identity=32.6923076923077, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1789548, Length=296, Percent_Identity=31.4189189189189, Blast_Score=145, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 89602; Mature: 89602

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFMERIELLAPAGSMESLIAAINRGADAIYLGGSKFSARAYASNFDNETMEKAVDYAHT
CCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHH
YGVKVYVTVNTLIKENEFQEAVDYIGVLYKIGVDALIIQDVGLAKRIREVYPDFELHAST
CCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEEECCC
QMSIHNGEGALFFRENGFFRIVLSRELTLDEIKYISKDLGIETEIFVHGALCVCYSGQCL
EEEEECCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCHHH
MSSLIGGRSGNRGRCAQSCRLPYTLIREKDKKETKGFLLSPKDICTIENVEDLIKTGTSS
HHHHHCCCCCCCCCHHHHCCCCHHHHCCCCCHHCCCEEECCHHCEEHHHHHHHHHCCCCC
LKVEGRMKRPEYVAGVIESYREAIDNSYRNIKKSQEGNKFKLKKLFNREGFSTAYMYKNV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCHHHHHHHC
GKDMMAFKTPRNTGVLLGEVLKNGEVLLLDDLSLKDGIRTNDDGFTVSKILMGNREVTEA
CCHHHEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEHHHHCCCHHHHC
KKGDKVKIFPKKYKANDKLYKTSDTKLLNELKTSYENPYERKINLKAYMKFKVNEPMELT
CCCCEEEEEEHHCCCCCCEEECCHHHHHHHHHHHHCCCHHHEEEEEEEEEEECCCCEEEE
VEYNGNYFTKTGDMVQVAVNRPMDKEKVEKNLKKSGDIPYEISEIEYVTFEDGFAAVSSI
EEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEECCEEEEEECCCHHHHHHH
NNLRREVLEEIRNSEIKKYKRVIEKQNNIELNEKKGEMPEVLVVVNTKEQLRASIDCGIK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEECCHHHHHHHHCCCCE
NIALDIFGKNQGQLNKNAIKEFKVEGINLYIKAPTIIKEEFETISNIIEENLNLIKGLVT
EEEEEEEECCCCCCCHHHHHHHEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
ANTGIINRFKDKTNIIGDYKLNIFNSYGMKFYNEHMMGSCLSLELNKKELNKMLKKYSKG
CCCHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCC
AQIFVYGRPEVMVSEYCPIGSTFGGKCTSKNCDNQCVSSTFTLRDRMNQDFVIRTDIFCR
CEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHH
SHIYNTVPVNLIQEIDEIKSLGVNSLRLDFVDENYEEVRQVIEALNKEEALRLKDYTKGH
HHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHCHHH
FKRGVE
HHCCCC
>Mature Secondary Structure
MNFMERIELLAPAGSMESLIAAINRGADAIYLGGSKFSARAYASNFDNETMEKAVDYAHT
CCHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHH
YGVKVYVTVNTLIKENEFQEAVDYIGVLYKIGVDALIIQDVGLAKRIREVYPDFELHAST
CCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEEECCC
QMSIHNGEGALFFRENGFFRIVLSRELTLDEIKYISKDLGIETEIFVHGALCVCYSGQCL
EEEEECCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCHHH
MSSLIGGRSGNRGRCAQSCRLPYTLIREKDKKETKGFLLSPKDICTIENVEDLIKTGTSS
HHHHHCCCCCCCCCHHHHCCCCHHHHCCCCCHHCCCEEECCHHCEEHHHHHHHHHCCCCC
LKVEGRMKRPEYVAGVIESYREAIDNSYRNIKKSQEGNKFKLKKLFNREGFSTAYMYKNV
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCHHHHHHHC
GKDMMAFKTPRNTGVLLGEVLKNGEVLLLDDLSLKDGIRTNDDGFTVSKILMGNREVTEA
CCHHHEEECCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEHHHHCCCHHHHC
KKGDKVKIFPKKYKANDKLYKTSDTKLLNELKTSYENPYERKINLKAYMKFKVNEPMELT
CCCCEEEEEEHHCCCCCCEEECCHHHHHHHHHHHHCCCHHHEEEEEEEEEEECCCCEEEE
VEYNGNYFTKTGDMVQVAVNRPMDKEKVEKNLKKSGDIPYEISEIEYVTFEDGFAAVSSI
EEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEECCEEEEEECCCHHHHHHH
NNLRREVLEEIRNSEIKKYKRVIEKQNNIELNEKKGEMPEVLVVVNTKEQLRASIDCGIK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEECCHHHHHHHHCCCCE
NIALDIFGKNQGQLNKNAIKEFKVEGINLYIKAPTIIKEEFETISNIIEENLNLIKGLVT
EEEEEEEECCCCCCCHHHHHHHEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
ANTGIINRFKDKTNIIGDYKLNIFNSYGMKFYNEHMMGSCLSLELNKKELNKMLKKYSKG
CCCHHHHHHHHHCCCEEEEEEEEEECCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCC
AQIFVYGRPEVMVSEYCPIGSTFGGKCTSKNCDNQCVSSTFTLRDRMNQDFVIRTDIFCR
CEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHH
SHIYNTVPVNLIQEIDEIKSLGVNSLRLDFVDENYEEVRQVIEALNKEEALRLKDYTKGH
HHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCHHHHHHHHHHCHHH
FKRGVE
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]