| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310839
Identifier: 18310839
GI number: 18310839
Start: 2125749
End: 2126465
Strand: Reverse
Name: 18310839
Synonym: CPE1857
Alternate gene names: NA
Gene position: 2126465-2125749 (Counterclockwise)
Preceding gene: 18310840
Following gene: 18310838
Centisome position: 70.15
GC content: 29.15
Gene sequence:
>717_bases TTGAAGAAGTTGTCTTCACAAATTATTATAGGTATAGTTTGTGCTTTGTTAGGGTTTTTATTAACCTACCAATTTAAAAT TATAAATAATAAAGAGAAAAATATAATAGAAAATTATAACCAAAATGACATAATGGCAGAGATAGACGGTCTTAAGAAGG AGAAAGAAGAGCTTCAAAAGAATAATGATTCTTTAAATAAGAGGCTTAAAGAAATGGAGGATGCAGCAGCATCTAAAGGG GATGTAAATAATAAAATAAAAGAGCAATTAGATAAAACAAGAATGATTTTAGGAACTGAAGAGGTTAAGGGTCCAGGAAT AATTTTATCCATAACACCTAAATCTCCATTGCTTACTTCAAAGGATCCTGAATATATAAGTGAAAAGGAGATAATTCACA TATTAAACTTATTAGCTTTCTCAGGTGCAGAAGCTATTGCAGTTAATGATATTAGAATAACTCCTCAGACAGGAATAAAG AATGCTAGTAACTTTATATGGATAGGAAATAATGAAAGAATTTCTCCAAAGGAGAAGCTAACAATAAAGGTTATTGGTAA TCAAGATAACTTAATAAAAGGAATTGATTTCCCAGGGGAAATGGACTATGGAGTATTAGGAGGTAATTATGATTATAAAT ATGAGAAAAAAGATTCAATTACAATACCTAAGACTACTCAAAACCTATCTTCTGAATATTTAAAAAAGGTTGATTAG
Upstream 100 bases:
>100_bases ATATTAAATGATCCAGCAGGAAATTTTGAAAAGGGATATATAAACATAAGCTTTAATGGGAATCCTGTAATATATAAAGA AAAGTAAGGAGGAGTGCTTT
Downstream 100 bases:
>100_bases GAAGGTGATTGAATGATAGTATTTATTGGGCTTTTAGTAGGTATAATAATAGGAGTTATATTTCCAGGAAGCATACCAGA TAAGTTTTCCCCATATTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MKKLSSQIIIGIVCALLGFLLTYQFKIINNKEKNIIENYNQNDIMAEIDGLKKEKEELQKNNDSLNKRLKEMEDAAASKG DVNNKIKEQLDKTRMILGTEEVKGPGIILSITPKSPLLTSKDPEYISEKEIIHILNLLAFSGAEAIAVNDIRITPQTGIK NASNFIWIGNNERISPKEKLTIKVIGNQDNLIKGIDFPGEMDYGVLGGNYDYKYEKKDSITIPKTTQNLSSEYLKKVD
Sequences:
>Translated_238_residues MKKLSSQIIIGIVCALLGFLLTYQFKIINNKEKNIIENYNQNDIMAEIDGLKKEKEELQKNNDSLNKRLKEMEDAAASKG DVNNKIKEQLDKTRMILGTEEVKGPGIILSITPKSPLLTSKDPEYISEKEIIHILNLLAFSGAEAIAVNDIRITPQTGIK NASNFIWIGNNERISPKEKLTIKVIGNQDNLIKGIDFPGEMDYGVLGGNYDYKYEKKDSITIPKTTQNLSSEYLKKVD >Mature_238_residues MKKLSSQIIIGIVCALLGFLLTYQFKIINNKEKNIIENYNQNDIMAEIDGLKKEKEELQKNNDSLNKRLKEMEDAAASKG DVNNKIKEQLDKTRMILGTEEVKGPGIILSITPKSPLLTSKDPEYISEKEIIHILNLLAFSGAEAIAVNDIRITPQTGIK NASNFIWIGNNERISPKEKLTIKVIGNQDNLIKGIDFPGEMDYGVLGGNYDYKYEKKDSITIPKTTQNLSSEYLKKVD
Specific function: Unknown
COG id: COG3879
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26763; Mature: 26763
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLSSQIIIGIVCALLGFLLTYQFKIINNKEKNIIENYNQNDIMAEIDGLKKEKEELQK CCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH NNDSLNKRLKEMEDAAASKGDVNNKIKEQLDKTRMILGTEEVKGPGIILSITPKSPLLTS CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCC KDPEYISEKEIIHILNLLAFSGAEAIAVNDIRITPQTGIKNASNFIWIGNNERISPKEKL CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCEE TIKVIGNQDNLIKGIDFPGEMDYGVLGGNYDYKYEKKDSITIPKTTQNLSSEYLKKVD EEEEECCCCCEEECCCCCCCCCCEEECCCCCCEECCCCCEECCCCHHHHHHHHHHHCC >Mature Secondary Structure MKKLSSQIIIGIVCALLGFLLTYQFKIINNKEKNIIENYNQNDIMAEIDGLKKEKEELQK CCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHH NNDSLNKRLKEMEDAAASKGDVNNKIKEQLDKTRMILGTEEVKGPGIILSITPKSPLLTS CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCC KDPEYISEKEIIHILNLLAFSGAEAIAVNDIRITPQTGIKNASNFIWIGNNERISPKEKL CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCEE TIKVIGNQDNLIKGIDFPGEMDYGVLGGNYDYKYEKKDSITIPKTTQNLSSEYLKKVD EEEEECCCCCEEECCCCCCCCCCEEECCCCCCEECCCCCEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA