Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310818

Identifier: 18310818

GI number: 18310818

Start: 2109886

End: 2110233

Strand: Reverse

Name: 18310818

Synonym: CPE1836

Alternate gene names: NA

Gene position: 2110233-2109886 (Counterclockwise)

Preceding gene: 18310819

Following gene: 18310817

Centisome position: 69.61

GC content: 21.55

Gene sequence:

>348_bases
GTGAAAAAATTAAAATTAGATGTAACTTTAGCTACTATTTTTATAGTTATACTATTAGTACAAGGTATAGAGCTTTTTCA
ATTAAGAAATTATGAAATTCCAGTTTTAACAAACTCTATAGGAGAAATGGATTTAAATACAGTATTAAAAAATATAGAAA
ATAAGGATTGTACTGTTTTACAATTAGAATATAAAGAGGGATGGATAGGTAAAGTTTTATTTACAGGCTCTTTAGAGGAT
TTAAGTAATTATGTTAATTTATTAAAAAATAATAATATTAATATAAAAAATTATAAAATAGAAAAATCAGAAGAATTAAG
GTGTTTTTTGGAGCTTAAGGTTGTATAG

Upstream 100 bases:

>100_bases
AAAATTCTCTTATTAATTATATTAATAAAATTAATGGAAGAGTTTATGATATAAGCTTAAATGAATCTAATAATACTTAT
AGATTAAAAGGAGAATTAAG

Downstream 100 bases:

>100_bases
TCTTGTAAATTTAATGAAAATAATTGCATTTATTATTAGCTTTTGATAAAATATGATTGTTGTTTTACACTTTAAATAGT
AAATAAGTAACAAGGTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKKLKLDVTLATIFIVILLVQGIELFQLRNYEIPVLTNSIGEMDLNTVLKNIENKDCTVLQLEYKEGWIGKVLFTGSLED
LSNYVNLLKNNNINIKNYKIEKSEELRCFLELKVV

Sequences:

>Translated_115_residues
MKKLKLDVTLATIFIVILLVQGIELFQLRNYEIPVLTNSIGEMDLNTVLKNIENKDCTVLQLEYKEGWIGKVLFTGSLED
LSNYVNLLKNNNINIKNYKIEKSEELRCFLELKVV
>Mature_115_residues
MKKLKLDVTLATIFIVILLVQGIELFQLRNYEIPVLTNSIGEMDLNTVLKNIENKDCTVLQLEYKEGWIGKVLFTGSLED
LSNYVNLLKNNNINIKNYKIEKSEELRCFLELKVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13307; Mature: 13307

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLKLDVTLATIFIVILLVQGIELFQLRNYEIPVLTNSIGEMDLNTVLKNIENKDCTVL
CCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCHHHHHHHCCCCCCEEE
QLEYKEGWIGKVLFTGSLEDLSNYVNLLKNNNINIKNYKIEKSEELRCFLELKVV
EEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEC
>Mature Secondary Structure
MKKLKLDVTLATIFIVILLVQGIELFQLRNYEIPVLTNSIGEMDLNTVLKNIENKDCTVL
CCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCCCHHHHHHHCCCCCCEEE
QLEYKEGWIGKVLFTGSLEDLSNYVNLLKNNNINIKNYKIEKSEELRCFLELKVV
EEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA