Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is yjjP [C]

Identifier: 18310572

GI number: 18310572

Start: 1864689

End: 1865459

Strand: Direct

Name: yjjP [C]

Synonym: CPE1590

Alternate gene names: 18310572

Gene position: 1864689-1865459 (Clockwise)

Preceding gene: 18310567

Following gene: 18310573

Centisome position: 61.51

GC content: 28.79

Gene sequence:

>771_bases
ATGGATTTTAATAGAATTATCAATTTCTCAACTGAACTTGGTACTCTAATGCTTGAAAATGGCGCTGAAACATATAGAGT
TGAAGAAACCATGAGCAGAATCTGTTTGGCTTATGGAATAGAAAAAGTTGATGTTTTTGTAATTCCTACAAACATAATAA
TAACAATAAAAACATATAAAAATGCAATTTCTAGAACTAGAAGGGTAACAAGTAGAACTATTAATTTAGATAAAATAGCT
AAATTAAACAACCTTTCAAGAGAGGTTGCCTTTAATAAAGTTTCTATTGAAGATGCTGAAAAAAAGCTAAGTAGTATAGC
TGATGAAAAAGAATATCCTCTTAAAATAAAAATATTAGGATATTTAATTTCAGCTTCAACATTTACTCTACTTTTTGGAG
GTAATTTAAAGGATTCTTTAGTCTCAGGTTTTATAGGAATAGTTCTTTGTCTTCTTGCATACTTTTTTAATATTTTAAAG
ACAAACAATTTCTTTGTAAACATAATATCTGGAGCTTTGGCATCATTACTAGCTTTTCTTGCAGTAAGATTTAATATTGC
TCCTAATCTAAATGAAATAATAATAGGTTCTTTAATGCCCTTAGTACCTGGACTTGCTATAACTAACTCACTTCGTGATA
TAATAGCTGGTGATTTAGTTGCTGGAAGTGCTAAATTTATTGAAGCCTTTTTAATAGCTGTAGGTATTGCTATTGGAAGT
GCTAGTATTTTATCTATATTAATAAATCACTATGGGGGTATGGCTATATGA

Upstream 100 bases:

>100_bases
CTTTATAATAAACTCTTCTTCAAAGTATAATAGAAAAGAAATATTGTAATAATGAAAAAATGTTTCTTATTAATTTTTAC
ATACTTATTTGGAGGTACAT

Downstream 100 bases:

>100_bases
ACCTAATAATAAACTCAATATATGCATTTTTTAGTTCTTTAGGTTTTGGAATAATATTTAATATAAAAGGTAAAAACTTA
TTTTTCTCTTCCCTATGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDFNRIINFSTELGTLMLENGAETYRVEETMSRICLAYGIEKVDVFVIPTNIIITIKTYKNAISRTRRVTSRTINLDKIA
KLNNLSREVAFNKVSIEDAEKKLSSIADEKEYPLKIKILGYLISASTFTLLFGGNLKDSLVSGFIGIVLCLLAYFFNILK
TNNFFVNIISGALASLLAFLAVRFNIAPNLNEIIIGSLMPLVPGLAITNSLRDIIAGDLVAGSAKFIEAFLIAVGIAIGS
ASILSILINHYGGMAI

Sequences:

>Translated_256_residues
MDFNRIINFSTELGTLMLENGAETYRVEETMSRICLAYGIEKVDVFVIPTNIIITIKTYKNAISRTRRVTSRTINLDKIA
KLNNLSREVAFNKVSIEDAEKKLSSIADEKEYPLKIKILGYLISASTFTLLFGGNLKDSLVSGFIGIVLCLLAYFFNILK
TNNFFVNIISGALASLLAFLAVRFNIAPNLNEIIIGSLMPLVPGLAITNSLRDIIAGDLVAGSAKFIEAFLIAVGIAIGS
ASILSILINHYGGMAI
>Mature_256_residues
MDFNRIINFSTELGTLMLENGAETYRVEETMSRICLAYGIEKVDVFVIPTNIIITIKTYKNAISRTRRVTSRTINLDKIA
KLNNLSREVAFNKVSIEDAEKKLSSIADEKEYPLKIKILGYLISASTFTLLFGGNLKDSLVSGFIGIVLCLLAYFFNILK
TNNFFVNIISGALASLLAFLAVRFNIAPNLNEIIIGSLMPLVPGLAITNSLRDIIAGDLVAGSAKFIEAFLIAVGIAIGS
ASILSILINHYGGMAI

Specific function: Unknown

COG id: COG2966

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082435, Length=245, Percent_Identity=21.6326530612245, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27934; Mature: 27934

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFNRIINFSTELGTLMLENGAETYRVEETMSRICLAYGIEKVDVFVIPTNIIITIKTYK
CCCHHHEECCHHHHHEEECCCCCCEEHHHHHHHHHHHHCCCEEEEEEECCCEEEEEHHHH
NAISRTRRVTSRTINLDKIAKLNNLSREVAFNKVSIEDAEKKLSSIADEKEYPLKIKILG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEHHH
YLISASTFTLLFGGNLKDSLVSGFIGIVLCLLAYFFNILKTNNFFVNIISGALASLLAFL
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AVRFNIAPNLNEIIIGSLMPLVPGLAITNSLRDIIAGDLVAGSAKFIEAFLIAVGIAIGS
HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ASILSILINHYGGMAI
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDFNRIINFSTELGTLMLENGAETYRVEETMSRICLAYGIEKVDVFVIPTNIIITIKTYK
CCCHHHEECCHHHHHEEECCCCCCEEHHHHHHHHHHHHCCCEEEEEEECCCEEEEEHHHH
NAISRTRRVTSRTINLDKIAKLNNLSREVAFNKVSIEDAEKKLSSIADEKEYPLKIKILG
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEHHH
YLISASTFTLLFGGNLKDSLVSGFIGIVLCLLAYFFNILKTNNFFVNIISGALASLLAFL
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AVRFNIAPNLNEIIIGSLMPLVPGLAITNSLRDIIAGDLVAGSAKFIEAFLIAVGIAIGS
HHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ASILSILINHYGGMAI
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA