Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310554

Identifier: 18310554

GI number: 18310554

Start: 1840447

End: 1841112

Strand: Direct

Name: 18310554

Synonym: CPE1572

Alternate gene names: NA

Gene position: 1840447-1841112 (Clockwise)

Preceding gene: 18310541

Following gene: 18310567

Centisome position: 60.71

GC content: 23.42

Gene sequence:

>666_bases
ATGAATGCAAAGGAATTTTTAGATAAAGAAAAAACTACTTATGGTAATCTTTACAGTGAGCTAATTTTTGTTTTAGATGA
TATTGAAGATTTAAGTGAAGATTCTACTTTAAAGGAAAGAGCATACTACAAAAACATTAAAATATTAAAAAAATATAATG
ATTTACTAGATAAGTTATCTAGAGAAGTTCCAGAAAAAAAATCTTTCCTGTCATTTTTAAATAAATCTAAAGAAAATGAA
ATTATAAAAGAATGTGAAGATTTCAAAAAAACTTATAAAGATTCTCTTGATAAAATATTTGTATGTTCTAAATGCATGTG
TGTAAAATGCATAAGAGAATGTGGCTTTAACCCATGTTTATCATGTAACAAAACTGGAAAAGTTAATTATTGTGATAAAG
AAAATACTAATCTTATAGTATTTAAAAACTTTATAAAACAACAATACAATAATGAAACTAATGAAAATGAACCTCTTGAA
ATTCTTTGTGAAGTGGAAATGTTAGATATGGACAAGCGTTTTAGAATAATTAAAGAAGTTTTAAGTGGTGAACAACTTGT
ACTTGAGTATGTCTACAATATAAAAGATGGAGATTTATATAATTCAATTGAGGATGTAGACCTATTTAATGAAATAATAG
ATATTTATGAAAGTAATAAGATATAA

Upstream 100 bases:

>100_bases
ATTAAATTTTGTATATTTTAATAGTCTAAATTCATAATTATTTGATAATATATGATATCATAAATATATATATTATTTAT
ATGGTGAAGGAGTATAGCAA

Downstream 100 bases:

>100_bases
ATAAAAAGAAGATATTCAAATACTTAATAATTGCATGTATCAAAATAACTTCTTATAAAACTTACAAATAGCAAGAGAAT
ATCTAGATCATCTTTAGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLSREVPEKKSFLSFLNKSKENE
IIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCLSCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLE
ILCEVEMLDMDKRFRIIKEVLSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI

Sequences:

>Translated_221_residues
MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLSREVPEKKSFLSFLNKSKENE
IIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCLSCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLE
ILCEVEMLDMDKRFRIIKEVLSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI
>Mature_221_residues
MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLSREVPEKKSFLSFLNKSKENE
IIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCLSCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLE
ILCEVEMLDMDKRFRIIKEVLSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26146; Mature: 26146

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
REVPEKKSFLSFLNKSKENEIIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCL
HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLEILCEVEMLDMDKRFRIIKEV
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEHHHHHCHHHHHHHHHHH
LSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI
HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNAKEFLDKEKTTYGNLYSELIFVLDDIEDLSEDSTLKERAYYKNIKILKKYNDLLDKLS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
REVPEKKSFLSFLNKSKENEIIKECEDFKKTYKDSLDKIFVCSKCMCVKCIRECGFNPCL
HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SCNKTGKVNYCDKENTNLIVFKNFIKQQYNNETNENEPLEILCEVEMLDMDKRFRIIKEV
CCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEHHHHHCHHHHHHHHHHH
LSGEQLVLEYVYNIKDGDLYNSIEDVDLFNEIIDIYESNKI
HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA