BacMap

Definition	Clostridium perfringens str. 13, complete genome.
Accession	NC_003366
Length	3,031,430

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The map label for this gene is cshA [H]

Identifier: 18310498

GI number: 18310498

Start: 1773697

End: 1774920

Strand: Reverse

Name: cshA [H]

Synonym: CPE1516

Alternate gene names: 18310498

Gene position: 1774920-1773697 (Counterclockwise)

Preceding gene: 18310499

Following gene: 18310497

Centisome position: 58.55

GC content: 28.02

Gene sequence:

>1224_bases
ATGCTAATGGATAAATTTTTAAAGTTAGGATTAAGTGAAGAGGTTTTAAAATCTTTAGTAGGATTAGGAATAGAGGAGCC
AACAGATATTCAGGAAAAAGCTATACCTGAAATTTTAAGTGGTAAAAATGTAATAGGAAAAGCTGAAACAGGAACAGGAA
AAACTTTAGCATATTTACTTCCTATAATAGAAAAGATTGATGATTCAAAAAATGAGATGCAAGCCATTATTCTTTCGCCA
ACTCATGAATTGGGAGTTCAGATAAACAATGTTTTAAATGATCTTAAAAGAGGACTTGGAAAAAAGATAACTTCAACAAC
TTTAGTTGGAAGCGGAAATATAAAGAGACAAATAGAGAAGCTTAAAAATAAGCCTCATATACTTGTTGGAACTACAGGGA
GAATTTTAGAGCTTATAAATAAGAAAAAAATAACAACTAATACCATAAAAACAATAGTTATTGACGAAGGTGATAAACTA
TTAGATTTTATAAACATAAAAGATGTGAGAAGTGTTGTTAAATCTTGTCCAAGAGATACACAAAAGCTTATATTCTCAGC
TACAATGAATGAAAAAGCATTAGAAACTGCAGATGAATTAATAGGAATAAGTGAGCTTATTCAAGCTAAAGCTGCAAACA
AGGTTAATGAAAATATAGAACATGGATATTTTCAAGTAGAATTAAGAGATAAAATAGACTTTTTAAGAAAGCTTATACAT
GCTATAGGGGATGAGAAAAAAATAATAGTTTTTATAAATAATAGCTATAATGTACATAATGTAATTCAAAAGTTAAAATA
TAATAAAATAGAGGCAGTTTCTCTTCATGGAAGTGATAATAAAATGGAGAGAAAGAAGGCACTTCAAGATTTTAGAAGTG
GAAAAGCCAAGGTTTTAATAACTTCAGATGTATCAGCTAGAGGGCTAGATATTAAGGGAGCTACACATATAGTTAACTTA
GATATTCCTATGAATTCTCAAAATTACTTACATAGGGTAGGACGTGTAGGAAGAGCTGGAGAAAAAGGTTTTGCATACTC
TTTAGCAGATTATAAAGAAGAAAAAATAATAGTAAAATGTGAAAGACAATTAAAAATAAAAATTCCTAGAGTTTATTTAT
ATGAAGGAAAGATACATGAAACAGAGGTAAAAAAGGTTTCTTCAAATAAAAATAATAGTAAAAAGAAAAGTAATTTACCT
AAAAAGGTATATAAAAAAAGATAA

Upstream 100 bases:

>100_bases
AGTTGAAGAAGGAAGGCGTAGATACTTCTCATTTTGAAACTCTTTGTGAGAATATATTAAAAAACAATAAGATTAAACTT
TAGAGTTAAAGAAGGATGGG

Downstream 100 bases:

>100_bases
TTAAATATATATTATAATGCACCAAAGAAGCCATTTCTTTTGGTGCTTTTTTTTATTTAAATAGTATTTTTATCTATTGT
TAATTTGAATTTAATTAATA

Product: ATP-dependent RNA helicase, DEAD/DEAH box family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLMDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQAIILSP
THELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIEKLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKL
LDFINIKDVRSVVKSCPRDTQKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIH
AIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDVSARGLDIKGATHIVNL
DIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQLKIKIPRVYLYEGKIHETEVKKVSSNKNNSKKKSNLP
KKVYKKR

Sequences:

>Translated_407_residues
MLMDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQAIILSP
THELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIEKLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKL
LDFINIKDVRSVVKSCPRDTQKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIH
AIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDVSARGLDIKGATHIVNL
DIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQLKIKIPRVYLYEGKIHETEVKKVSSNKNNSKKKSNLP
KKVYKKR
>Mature_407_residues
MLMDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQAIILSP
THELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIEKLKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKL
LDFINIKDVRSVVKSCPRDTQKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIH
AIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDVSARGLDIKGATHIVNL
DIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQLKIKIPRVYLYEGKIHETEVKKVSSNKNNSKKKSNLP
KKVYKKR

Specific function: May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. Unwinds dsRNA in both 5'- and 3'-directions and shows RNA-dependent ATPase activity [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI7661920, Length=364, Percent_Identity=32.4175824175824, Blast_Score=208, Evalue=7e-54,
Organism=Homo sapiens, GI31542656, Length=410, Percent_Identity=31.4634146341463, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI164664518, Length=397, Percent_Identity=30.7304785894207, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI4503529, Length=334, Percent_Identity=31.7365269461078, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI21071032, Length=355, Percent_Identity=30.4225352112676, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI20149629, Length=367, Percent_Identity=30.5177111716621, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI41327773, Length=351, Percent_Identity=31.6239316239316, Blast_Score=189, Evalue=4e-48,
Organism=Homo sapiens, GI51094101, Length=346, Percent_Identity=30.9248554913295, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI164419743, Length=346, Percent_Identity=30.9248554913295, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI83700235, Length=334, Percent_Identity=31.437125748503, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI148613856, Length=354, Percent_Identity=31.3559322033898, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI38201710, Length=354, Percent_Identity=31.3559322033898, Blast_Score=186, Evalue=4e-47,
Organism=Homo sapiens, GI262118318, Length=364, Percent_Identity=32.4175824175824, Blast_Score=185, Evalue=6e-47,
Organism=Homo sapiens, GI262231852, Length=369, Percent_Identity=31.9783197831978, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI216548263, Length=369, Percent_Identity=31.9783197831978, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI13518015, Length=369, Percent_Identity=31.9783197831978, Blast_Score=182, Evalue=4e-46,
Organism=Homo sapiens, GI301171475, Length=347, Percent_Identity=31.1239193083574, Blast_Score=181, Evalue=8e-46,
Organism=Homo sapiens, GI301171467, Length=408, Percent_Identity=28.6764705882353, Blast_Score=181, Evalue=9e-46,
Organism=Homo sapiens, GI87196351, Length=347, Percent_Identity=31.1239193083574, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI224593278, Length=369, Percent_Identity=30.3523035230352, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI169881239, Length=347, Percent_Identity=30.835734870317, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI13514809, Length=347, Percent_Identity=30.835734870317, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI222352149, Length=346, Percent_Identity=30.9248554913295, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI55749865, Length=354, Percent_Identity=30.7909604519774, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI4758138, Length=358, Percent_Identity=30.1675977653631, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI41327776, Length=365, Percent_Identity=30.6849315068493, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI50659095, Length=399, Percent_Identity=31.5789473684211, Blast_Score=171, Evalue=2e-42,
Organism=Homo sapiens, GI45446747, Length=372, Percent_Identity=31.1827956989247, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI45446743, Length=372, Percent_Identity=31.1827956989247, Blast_Score=170, Evalue=3e-42,
Organism=Homo sapiens, GI21040371, Length=368, Percent_Identity=26.9021739130435, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI41327771, Length=379, Percent_Identity=29.023746701847, Blast_Score=166, Evalue=3e-41,
Organism=Homo sapiens, GI4758112, Length=368, Percent_Identity=27.445652173913, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI18375623, Length=368, Percent_Identity=27.445652173913, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI13514831, Length=351, Percent_Identity=30.7692307692308, Blast_Score=163, Evalue=2e-40,
Organism=Homo sapiens, GI188035877, Length=399, Percent_Identity=28.0701754385965, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI8922886, Length=361, Percent_Identity=29.9168975069252, Blast_Score=162, Evalue=6e-40,
Organism=Homo sapiens, GI6005743, Length=360, Percent_Identity=29.4444444444444, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI13129006, Length=382, Percent_Identity=28.0104712041885, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI164419732, Length=353, Percent_Identity=29.7450424929178, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI38327634, Length=386, Percent_Identity=28.4974093264249, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI62241022, Length=344, Percent_Identity=29.6511627906977, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI38569503, Length=350, Percent_Identity=30.2857142857143, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI38569505, Length=350, Percent_Identity=30.2857142857143, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI41327779, Length=374, Percent_Identity=27.2727272727273, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI62241024, Length=331, Percent_Identity=29.0030211480363, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI256223453, Length=377, Percent_Identity=28.9124668435013, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI256773275, Length=374, Percent_Identity=27.807486631016, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI17505907, Length=409, Percent_Identity=25.4278728606357, Blast_Score=131, Evalue=1e-30,
Organism=Homo sapiens, GI9506931, Length=417, Percent_Identity=25.1798561151079, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI154759257, Length=401, Percent_Identity=23.6907730673317, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI4826686, Length=342, Percent_Identity=27.1929824561404, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI20336298, Length=204, Percent_Identity=28.4313725490196, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI1787016, Length=379, Percent_Identity=33.509234828496, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI87082221, Length=368, Percent_Identity=32.0652173913043, Blast_Score=228, Evalue=4e-61,
Organism=Escherichia coli, GI1790214, Length=408, Percent_Identity=31.1274509803922, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1787605, Length=346, Percent_Identity=33.2369942196532, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1788930, Length=352, Percent_Identity=31.25, Blast_Score=170, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI71987143, Length=345, Percent_Identity=33.6231884057971, Blast_Score=217, Evalue=7e-57,
Organism=Caenorhabditis elegans, GI71995724, Length=364, Percent_Identity=31.8681318681319, Blast_Score=208, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI17507121, Length=364, Percent_Identity=31.5934065934066, Blast_Score=207, Evalue=7e-54,
Organism=Caenorhabditis elegans, GI17555296, Length=403, Percent_Identity=30.5210918114144, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17552114, Length=391, Percent_Identity=29.4117647058824, Blast_Score=187, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI71995718, Length=374, Percent_Identity=31.8181818181818, Blast_Score=183, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI86570094, Length=359, Percent_Identity=33.983286908078, Blast_Score=183, Evalue=2e-46,
Organism=Caenorhabditis elegans, GI17537549, Length=404, Percent_Identity=28.960396039604, Blast_Score=178, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17510307, Length=374, Percent_Identity=30.2139037433155, Blast_Score=178, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17510309, Length=374, Percent_Identity=30.2139037433155, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI71995514, Length=374, Percent_Identity=30.2139037433155, Blast_Score=177, Evalue=7e-45,
Organism=Caenorhabditis elegans, GI17507945, Length=361, Percent_Identity=29.0858725761773, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71999646, Length=345, Percent_Identity=30.1449275362319, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71999644, Length=345, Percent_Identity=30.1449275362319, Blast_Score=174, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17552642, Length=344, Percent_Identity=34.3023255813954, Blast_Score=173, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17507877, Length=381, Percent_Identity=32.0209973753281, Blast_Score=171, Evalue=7e-43,
Organism=Caenorhabditis elegans, GI115533224, Length=333, Percent_Identity=30.6306306306306, Blast_Score=170, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17505370, Length=354, Percent_Identity=33.0508474576271, Blast_Score=167, Evalue=7e-42,
Organism=Caenorhabditis elegans, GI32565321, Length=380, Percent_Identity=29.4736842105263, Blast_Score=167, Evalue=9e-42,
Organism=Caenorhabditis elegans, GI115532546, Length=386, Percent_Identity=29.5336787564767, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17510559, Length=426, Percent_Identity=27.4647887323944, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI71982858, Length=347, Percent_Identity=27.6657060518732, Blast_Score=161, Evalue=6e-40,
Organism=Caenorhabditis elegans, GI115532548, Length=359, Percent_Identity=29.8050139275766, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17507879, Length=385, Percent_Identity=31.4285714285714, Blast_Score=156, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17509811, Length=394, Percent_Identity=27.9187817258883, Blast_Score=155, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17507881, Length=364, Percent_Identity=29.3956043956044, Blast_Score=151, Evalue=5e-37,
Organism=Caenorhabditis elegans, GI71990816, Length=391, Percent_Identity=28.6445012787724, Blast_Score=151, Evalue=6e-37,
Organism=Caenorhabditis elegans, GI17536099, Length=395, Percent_Identity=28.6075949367089, Blast_Score=151, Evalue=6e-37,
Organism=Caenorhabditis elegans, GI17536101, Length=395, Percent_Identity=28.6075949367089, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI193206561, Length=361, Percent_Identity=27.1468144044321, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17536103, Length=395, Percent_Identity=28.6075949367089, Blast_Score=145, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI193208216, Length=385, Percent_Identity=29.0909090909091, Blast_Score=145, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17553716, Length=340, Percent_Identity=30, Blast_Score=143, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17508543, Length=397, Percent_Identity=27.2040302267003, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17556951, Length=336, Percent_Identity=28.8690476190476, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17507641, Length=397, Percent_Identity=26.9521410579345, Blast_Score=132, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI32564046, Length=382, Percent_Identity=26.7015706806283, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI25148291, Length=339, Percent_Identity=26.8436578171091, Blast_Score=121, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI25148203, Length=426, Percent_Identity=25.3521126760563, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71997889, Length=372, Percent_Identity=24.1935483870968, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71982862, Length=187, Percent_Identity=31.5508021390374, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71987152, Length=101, Percent_Identity=36.6336633663366, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320224, Length=344, Percent_Identity=33.4302325581395, Blast_Score=199, Evalue=4e-52,
Organism=Saccharomyces cerevisiae, GI6321856, Length=379, Percent_Identity=32.9815303430079, Blast_Score=198, Evalue=1e-51,
Organism=Saccharomyces cerevisiae, GI6320041, Length=371, Percent_Identity=32.6145552560647, Blast_Score=196, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6324217, Length=353, Percent_Identity=30.8781869688385, Blast_Score=186, Evalue=5e-48,
Organism=Saccharomyces cerevisiae, GI6324620, Length=358, Percent_Identity=34.0782122905028, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6320119, Length=374, Percent_Identity=28.8770053475936, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6323947, Length=355, Percent_Identity=32.112676056338, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6321963, Length=410, Percent_Identity=31.4634146341463, Blast_Score=179, Evalue=6e-46,
Organism=Saccharomyces cerevisiae, GI6322427, Length=371, Percent_Identity=31.5363881401617, Blast_Score=178, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6321360, Length=340, Percent_Identity=30.5882352941176, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6322912, Length=328, Percent_Identity=31.0975609756098, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6322323, Length=328, Percent_Identity=31.0975609756098, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6324778, Length=351, Percent_Identity=29.3447293447293, Blast_Score=173, Evalue=6e-44,
Organism=Saccharomyces cerevisiae, GI6323021, Length=370, Percent_Identity=30.5405405405405, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6325138, Length=374, Percent_Identity=27.807486631016, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6321111, Length=360, Percent_Identity=30.2777777777778, Blast_Score=159, Evalue=5e-40,
Organism=Saccharomyces cerevisiae, GI6320173, Length=459, Percent_Identity=27.2331154684096, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6321267, Length=347, Percent_Identity=28.8184438040346, Blast_Score=141, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6319714, Length=375, Percent_Identity=29.6, Blast_Score=140, Evalue=4e-34,
Organism=Saccharomyces cerevisiae, GI6319618, Length=413, Percent_Identity=28.8135593220339, Blast_Score=139, Evalue=6e-34,
Organism=Saccharomyces cerevisiae, GI6320449, Length=383, Percent_Identity=27.6762402088773, Blast_Score=132, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6320400, Length=387, Percent_Identity=26.6149870801034, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6324366, Length=366, Percent_Identity=28.9617486338798, Blast_Score=118, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321374, Length=430, Percent_Identity=27.6744186046512, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6323306, Length=199, Percent_Identity=35.678391959799, Blast_Score=103, Evalue=5e-23,
Organism=Saccharomyces cerevisiae, GI6322876, Length=197, Percent_Identity=32.48730964467, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24645031, Length=364, Percent_Identity=32.1428571428571, Blast_Score=206, Evalue=3e-53,
Organism=Drosophila melanogaster, GI24582080, Length=331, Percent_Identity=33.8368580060423, Blast_Score=197, Evalue=8e-51,
Organism=Drosophila melanogaster, GI24582078, Length=331, Percent_Identity=33.8368580060423, Blast_Score=197, Evalue=8e-51,
Organism=Drosophila melanogaster, GI17136248, Length=331, Percent_Identity=33.8368580060423, Blast_Score=197, Evalue=8e-51,
Organism=Drosophila melanogaster, GI24582075, Length=331, Percent_Identity=33.8368580060423, Blast_Score=197, Evalue=8e-51,
Organism=Drosophila melanogaster, GI24583281, Length=374, Percent_Identity=32.620320855615, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI24583279, Length=380, Percent_Identity=32.6315789473684, Blast_Score=197, Evalue=1e-50,
Organism=Drosophila melanogaster, GI24585582, Length=345, Percent_Identity=33.6231884057971, Blast_Score=193, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24642151, Length=355, Percent_Identity=33.5211267605634, Blast_Score=193, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24644479, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=3e-49,
Organism=Drosophila melanogaster, GI281361218, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI24644481, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI24644483, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI24644487, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI45551833, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI24644485, Length=355, Percent_Identity=30.7042253521127, Blast_Score=192, Evalue=5e-49,
Organism=Drosophila melanogaster, GI17136814, Length=405, Percent_Identity=31.358024691358, Blast_Score=191, Evalue=6e-49,
Organism=Drosophila melanogaster, GI21356161, Length=362, Percent_Identity=31.767955801105, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI18857967, Length=359, Percent_Identity=30.08356545961, Blast_Score=183, Evalue=2e-46,
Organism=Drosophila melanogaster, GI17977678, Length=365, Percent_Identity=28.4931506849315, Blast_Score=182, Evalue=3e-46,
Organism=Drosophila melanogaster, GI28574962, Length=355, Percent_Identity=29.8591549295775, Blast_Score=182, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24584399, Length=344, Percent_Identity=31.1046511627907, Blast_Score=178, Evalue=5e-45,
Organism=Drosophila melanogaster, GI21355075, Length=377, Percent_Identity=28.9124668435013, Blast_Score=177, Evalue=1e-44,
Organism=Drosophila melanogaster, GI28575014, Length=346, Percent_Identity=31.2138728323699, Blast_Score=175, Evalue=4e-44,
Organism=Drosophila melanogaster, GI17985987, Length=371, Percent_Identity=29.1105121293801, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI24662330, Length=368, Percent_Identity=29.6195652173913, Blast_Score=171, Evalue=8e-43,
Organism=Drosophila melanogaster, GI24584994, Length=376, Percent_Identity=29.2553191489362, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI28571808, Length=356, Percent_Identity=30.8988764044944, Blast_Score=161, Evalue=9e-40,
Organism=Drosophila melanogaster, GI28571809, Length=356, Percent_Identity=30.8988764044944, Blast_Score=161, Evalue=9e-40,
Organism=Drosophila melanogaster, GI24581954, Length=368, Percent_Identity=27.1739130434783, Blast_Score=158, Evalue=6e-39,
Organism=Drosophila melanogaster, GI24581952, Length=368, Percent_Identity=27.1739130434783, Blast_Score=158, Evalue=6e-39,
Organism=Drosophila melanogaster, GI24581956, Length=368, Percent_Identity=27.1739130434783, Blast_Score=158, Evalue=6e-39,
Organism=Drosophila melanogaster, GI24642822, Length=409, Percent_Identity=30.0733496332518, Blast_Score=155, Evalue=4e-38,
Organism=Drosophila melanogaster, GI21355559, Length=424, Percent_Identity=29.0094339622642, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI17647335, Length=366, Percent_Identity=26.2295081967213, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24643725, Length=393, Percent_Identity=27.2264631043257, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24666101, Length=343, Percent_Identity=28.8629737609329, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI19920478, Length=386, Percent_Identity=28.7564766839378, Blast_Score=142, Evalue=6e-34,
Organism=Drosophila melanogaster, GI281365720, Length=316, Percent_Identity=28.1645569620253, Blast_Score=141, Evalue=6e-34,
Organism=Drosophila melanogaster, GI28571338, Length=460, Percent_Identity=25.4347826086956, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI18859659, Length=460, Percent_Identity=25.6521739130435, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI20130173, Length=456, Percent_Identity=24.780701754386, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24668515, Length=339, Percent_Identity=29.2035398230088, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24640164, Length=367, Percent_Identity=23.1607629427793, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 45724; Mature: 45724

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLL
CCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
PIIEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIEK
HHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCHHHHHHH
LKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRDT
HCCCCEEEEECCHHHHHHHHCCCEECCCEEEEEEECCCHHHHHCCHHHHHHHHHHCCCHH
QKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
AIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLI
HHCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE
TSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKC
EECCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEHHHCCCCEEEEEE
ERQLKIKIPRVYLYEGKIHETEVKKVSSNKNNSKKKSNLPKKVYKKR
CCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCHHHHCCC
>Mature Secondary Structure
MLMDKFLKLGLSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLL
CCHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
PIIEKIDDSKNEMQAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIEK
HHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCHHHHHHH
LKNKPHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRDT
HCCCCEEEEECCHHHHHHHHCCCEECCCEEEEEEECCCHHHHHCCHHHHHHHHHHCCCHH
QKLIFSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH
AIGDEKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLI
HHCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE
TSDVSARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKC
EECCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEHHHCCCCEEEEEE
ERQLKIKIPRVYLYEGKIHETEVKKVSSNKNNSKKKSNLPKKVYKKR
CCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]